LOC100301636 (LOC100301636)


Basic Information

Item Value
gene id LOC100301636
gene name LOC100301636
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 52389226 ~ 52393138 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001160474.1
GTACAGAGCAACCATGGGCAAACTACTCATCTGCGTTGgACTGGCTCTCCTGCTGCATGCACAGCTAGGATCCTCCTACATCCTATCCTGTTATTTCACTAACTGGGGCCAGTACCGGCCAGGAGCAGGCAAGTATTTCCCCACCAACGTGGACCCCTGTCTCTGTGACCATCTGATCTATGCCTTTGCCGGCATGGCCAACAACGAGATCAAGACCTACGAATGGGACGATGAGAAACTCTACGGACAGTTCCAGGCTCTCAagaaccaGAACAGCAACCTGAAGACTCTGCTAGCCATTGGAGGATGGAATTTTGGCACTCAGCCgtTCACAGCAATGGTGTCCAGTGCAGCCAACCGCCAGACGTTCATCAGCAGCGTTATCAAGTTCCTGAGACAGTACCAGTTTGACGGCCTGGACATTGACTGGGAGTATCCCGGATCCAGAGGCTCCCCACCCGCAGACAAGGCCAGATTCACCACCTTGCTGCAGGAGCTGATGGCTGCCTTTGAGGCTGAAGGAAAGAACACCAACCTTCCTCGTCTGATGCTGACTGCAGCTGTGGCTGCCGGAAAGGGAACCATCGACACCGGATACCAGATCGCCGAGATTGGAtccgtGTTGGACTACCTGCATGTGATGACCTATGACTTTCATGGATCTTGGGAACACAACACTGGAGAAAACAGCCCTCTCTACAGAGGACCAGCTGATCAGGGAGATTACATCTACTTCGATgtgGACTATGCTATGAAGTACTGGAAGAGCAGTGGTGCCCCCGCTGAGAAGCTCCTGGTTGGATTCCCCACCTACGGCCACACCTTCCAGCTGGCCAGTGGCTCTAACACTGGAGTGGGCGCCCCCGCCACTGGCCCCGGCCCGGCCGGACCATTCACCAGACAGTCTGGCTTCCTGGCCTACTACGAGatCTGCACCTTACTGAAGCAGGGCGCTACCCAGGCCTGGGACTCTGCCCAGATGGTGCCCTACGCCTACACCCAGCAGAACATCTGGGTTGGATATGACAACATCAAGAGTTACCAGGACAAGATCGAGTGGCTGAAGAACACTGGCTTCGGAGGAGCCATGGTGTGGAGTCTGGATCTGGATGACTTCTCTGGAACCTTCTGTGGACAGGGCAGATACCCACTGATCAACACCCTCAAGTCTGGACTGGGAACCGGAGCtgGTTGTGCCGCCCGTACGGGCCCCATTGCCCCAGTGACACCTGCCCAGCAACCACTCAACCCCCAACAGCCCGGAGGTCAAGGGGGCAGCAGTGGCAGTAGCAGTGGGGGATCTGGCTTCTGCGCCGGCAAGGCTGACGGCATGTACCCTGACCCCACCAATAAGAACAGCTTCTACAATTGTAGCCAGGGCAAGACCTACGACCAGCACTGTGCTGCCGGTCTGGTGTTCGACATCAGCTGCAAGTGCTGCAACTGGGCCTAAAAAAACCACGGTTCCCCCCTATTAATGTTTCCTTCCCCCTCTCGTATGTCATGAAGGAGCTGGGTCTAAAGGTTTTGTGGTTGTTAGGTCCACTGATGTCATGGCCCATTCTAACATCAGCTCCACTTACCATTTAAAATCCACTCCAATAAACATCCACCATATAAATTCAT

Function

NR:

description
gastric chitinase precursor

GO: NA

KEGG:

id description
K01183 E3.2.1.14; chitinase

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001160474.1 True 1626 mRNA 0.55 11 52389226 52393138

Neighbor

gene id symbol gene type direction distance location
LOC118936244 LOC100301636 coding upstream 8102 52377165 ~ 52381124 (+)
LOC110494066 LOC106565091 coding upstream 20876 52364095 ~ 52368350 (+)
zc3h11a zc3h11a coding upstream 25233 52342057 ~ 52363993 (+)
LOC110494062 LOC106565093 coding upstream 90965 52291226 ~ 52298261 (+)
LOC110494061 LOC106565309 coding upstream 108982 52274254 ~ 52280244 (+)
LOC110494068 LOC106565087 coding downstream 5417 52398555 ~ 52402423 (+)
zgc:113307 LOC106565325 coding downstream 51577 52444715 ~ 52454863 (+)
LOC110494072 LOC106565326 coding downstream 100633 52493771 ~ 52499544 (+)
LOC110494073 LOC106583524 coding downstream 246484 52639622 ~ 52699632 (+)
LOC110494075 LOC106565328 coding downstream 338260 52731398 ~ 52752182 (+)
G1461331 NA non-coding upstream 212268 52176739 ~ 52176958 (+)
G1461302 NA non-coding upstream 258416 52130593 ~ 52130810 (+)
G1461299 NA non-coding upstream 262175 52126815 ~ 52127051 (+)
G1461175 NA non-coding upstream 276103 52111723 ~ 52113123 (+)
G1461292 NA non-coding upstream 279651 52109215 ~ 52109575 (+)
G1461440 NA non-coding downstream 12203 52405341 ~ 52405572 (+)
G1461938 NA non-coding downstream 21974 52415112 ~ 52415333 (+)
G1461948 LOC106565086 non-coding downstream 29030 52422168 ~ 52423010 (+)
G1462021 NA non-coding downstream 110037 52503175 ~ 52503874 (+)
G1462159 NA non-coding downstream 312185 52705323 ~ 52705583 (+)
G1460249 LOC106565103 other upstream 1298337 51080132 ~ 51137770 (+)
LOC110494047 btg2 other upstream 1491782 50894903 ~ 50897444 (+)
G1459769 NA other upstream 1612154 50776529 ~ 50777072 (+)
atxn7l2a LOC106565127 other upstream 1953520 50427145 ~ 50437612 (+)
LOC110494957 qrich1 other upstream 2205530 50181045 ~ 50192699 (+)
G1464092 LOC106565344 other downstream 1780876 54147039 ~ 54189617 (+)
LOC110494100 LOC106565348 other downstream 1863243 54256327 ~ 54264616 (+)
LOC110494110 LOC106565356 other downstream 2078567 54471705 ~ 54474472 (+)
G1466124 NA other downstream 3603510 55996648 ~ 55998347 (+)
G1466131 NA other downstream 3622439 56015577 ~ 56016613 (+)

Expression


Co-expression Network