LOC110494075 (LOC106565328)


Basic Information

Item Value
gene id LOC110494075
gene name LOC106565328
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 52731398 ~ 52752182 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568772.2
TCAGTCTATCGCTCCTCTACTCTGACACCAGTCCTACCCAGGAGTCCTTCCCACAGGACATCCGTCCATCAGGGATACTTATCAATCGTGGACCAGGAGCAGAAGGAGCAGAGCGCCAAGCTTTAGTGAGCCATCCTTGGTGTCAGATCTAGAGGTTGATAGGTACTGAAAGAGGTCTGGAGGGTTAGGGAAGGGTACACCTGTTGTCTTAGCATCTGTTGGCACCGACCCAGACTTCAGAGCCTTATGGCAGGCCTGGATACATAAAATACATAATGGAATTCCAGTCCACCTGGGAACAGAAAACCCCCTGGACAATCCACGTAGTTCACCCTACATAACTCAAGAGGAGTGGGAGTTGGACGGGAGGATTTTATGTTTTTATGATAAACATCCATTCACAACTCATGTCAGGGAAACGTAGTTTAACCGTTTGACTCTTAAGCAGAAGGAATCCTCTGGCTCACCACACCAGTGAAAGATGGGGGAGTCTAGGCCTAATGGAACGCTTTTTATGTCTGTTCTGGAACTCTCATTGTGAACTATGGAACACTCTGGttcacctctgacccctgacctcaatGATACGACAGCCAATGAGAGCCTGTGGTGGGGGCTGGGGGCGCCCCTCCCTTCAGCCCCCAGCAGACAGCTGGGCACATTGCCCAACTCCCAGACACGCTTCAAGGACCTGACAGGGATATTCTTCATGGTGACCCTGAACGTGGTGGCGCTGCTGGCTAACACAGccgtgctggtggtggtggtcaaAGCCCCGCACCTCAGGAAGTTTGCCTTTGTGTGCCACCTGTGTGCGGTGGACCTGCTGTGTGCCGTGCTGCTCATGCCCTTGGGAATTGTGTCCAGCTCGCCGTACTTCGCCAGCGTGGTGTTCACAGTGCTGGAGTGCCAGGTGTACGTCTTCCTCAACGTGTTCCTCATCGCAGCCTCCATCTTCACCATCACGGCCATCAGCGTGGAGCGTTACTACTACATTGTCCACCCCATGCGCTACGAGGTAAAGATGACCCTGAAGCTAGCCACAGCCATCATGGTCCTGGTCTGGGTAGCCTCAGCCCTCCTGGGGCTGGCCACTGTGTTCGGCTGGCCCAGCTACGGCAGCCTGAGCTCCATCAGCGCCGCCCACTGCTCTCTCCACTGGAGCCACAGCGGCCACCGCCGGgccttctctgtcctcttcacagTGGCCTGTTTCTGCCTGCCCGCTGCAGTAATCTTTGCTGTGTACTGTAACGTCTATAAAGTGGCCCGCGTGGCGGCTAGACAGCATGGACCATTACCGTCCTGGACCGCCAGCCATCTTAAACACCGATCAGATTCCATCAGCAGCCAGACCACTATCATCACCACCCACAACGCCCCCAGGAGGCTCCACCAAAAAAGGCCCTTTGGTGGGGGCAAGGCCGCCTTCACCCTGGTGGTCATTGTGGGCCAGTTCCTGCTCTGCTGGTTGCCTTACTTCGCCTTCCACCTGCACCTGACTATCAACAACCCGCCCAAGGTCCCACCTGACCTAGAGGAGGCCGTCACCTGGCTAGCGTACTCCTCCTTTACCGTCAACCCATTCTTTTATGGGCTGCTGAACCGCCAGATCAGGGAGGAGCTGTGTAAGCTGCGGCGCTGCTACTCCACCCGGCTGGCCCTGTCCAGTGGCCACGAGGGCTCGGCCCACGAGAACTTCCTGCAGTTCCTCCAGAGAACCAGCTGTACGGTGGAGACCAGAGCCAGCTTTACCTGCACATCCAGCCCCAGGAACACCCTGGACCAGACAGCGCAGCAGACAGCTGACTTCAGGATACCTGGACAGATACCGGAGGAGTTCAATTAAAACGCCCCTGATATACTAACCTGGACCCCAGTGATATACTGTTACTGTATGGACACAAGCACCTGACTTACTGAGTTAAAACTGTTAAAACACCTTTATATCGGGCCACTGGAACCTTATTGACTTCGGTAATGGCTGCACCACAGGAATACTAGAAGCAGGAACAGCCTGGACAAGACTGGGCATACAGCTGAGTTCAGGATACCAGGGCAGATACCTGAGGATTTCAGTTAATCAACAATATTCTTAGATACATATGCCACTGGCACCTACTGTAGTTGACTGCTGTAATGGCAGTGCAAACTTCCCCAGGATCGCTGACCTAGAGCAGCAAAATTAGCCTGGGCGTAATTTCCCAGAGCCGTCGTAGCGTTAAGATCATCGCTAAGAACCTTCTTGCGATGTATCATTAGCAGCGAAGGTTTTTCCCAGAGCCTTCATTAGGAAAACTTTGCACATCTACGAGGGATCCAGACCACTTGTAGAGGAGCCAAAGTGCATCGTTGGATGCTTTTTGCCCTTCCACGTCACTTTATTCATAGAAGATCAAGATGTTTaggctgtctgtctgactgtgactGACAATAACTTCAGAACGAAGTTGACTACAGATACAAAGTTACCAAAGTATTAGCACATTTTACAAACAAGTGAAGGATAAAATGGTGCTTCAAATGAAAACCTGCAAATGAAAACCTGCATTAAAAGATCGATAGCCTATAACGGCCCATATAACCTATTTAAATCATATTGAAATAATTTAATGTTCAATCCCACTCAGCACAGATGGTTCAAcataatttattttaaattacgtggaaacaacattgattcaatcagtgtgtgcccagtgggatcaaTTTAGTTATATTTTGCCTCAATGTGTTTCATGATGTGTGACAACATTTGTACAATGATGTGCCCAATCTGTGATTCAGTGCATTATTATCGGGTAAGCATAATAAGCTGCCTCAATAGCTTATTTACAGCCATGGGTGGTAATATCTCTCTAGTAGCTGATCTGTTTTCAGTATTGTGGAATAGTTCTCATGTTAAGATATGATTTAAATGGAGAAAGCTGATTCCGAGAGCAGCGCTGCTTTTCTTTGGATCCTATCACTGTCGACACGTGGTCTAACGACGCCCTTAGCGAACATTCTCTTAAAGTGGTTGTTTAGGAAACGCAATTAAAAAGTTGGTTCGTAAATAACGATGCATCTGATGTGATCGTCATAATGCTTAAGTTACAGTACATCGCAACTGGGAAACGAGGCcccggtcccagatctgtttgtgctgtcttgacaCTCCTATTGTTATGCCTGACAATGaccgttgtttccacgtcatttcaatcaAAATAttaaatgtgatgacgttgaatcaacatggtAAACTGATTGGTCCAATTAATGACAGGGTAGCATTTTTGGTtaatttcacattgaattcacattagttgacaacttaACTAAAATGTAAGTCAAAACTAGATGTTGTACTGACATCTGTGCCCTGTGGGAGACCACATCAATGTCAGTCCAGTGGAGCAACCGTACGGCCCCCTACACACTGCCCttaaaacacacagagacaggcctcctgagtggtgcagaggtcgaaggcactgcatcgcagtgctagctgtgcaacTAGAGAACCTGGTTCGAGtctaggctctgtcgcagctggccgtgaCCAGGCGATGCAATGCATGCTGACACAGTTGCCAGGTGAACGGTGTTTCTtcagacacattggtgtggctggcttctgcgTTAAGCAGGCGTTCTGTcatgaagcagtgtggcttggctgggttgtgtttcggaggacgcacggctctcgaccctccgtacgggagttgcagcgactgGACTGTAACTACCGATTGGATAACATGATAAATGGGTcaaagaaacacacagagacagcactTCAAGGGACTACAAGTAGTGTGTTTCTTTTGATGTTTCCATTTTATTAATTTGATTGAGTTTATGTGTGTTGTTGCATTCCGAGATTATACCTTAAGTGCATTAAGTCCTGAAAAATACAGTTCTCAATTATTATTTGTTCTTTCTTGCTACAACTACCACAAATTGTGGGACTAATTCTACTACCAACCATTCCAATCACCTATATTACTACaagtatattctactaccactactactacaagtACAATGTTTGAGTTGAGAGACAATACAAAATAATACTTGAATAATGTTATTTACACTGTACTATACATCCACTGTCTGAACAACTCTGAACAAATTATTTATTATTCATTCCATGTTCAATATGGTGAACATTCAACACTCTCTAAGTGTAACAGGTGAGTTATTTCTATTACACAATATCAAATGTGATAATTTAACTATTTGGTTCTCAGTTGAGGTTTAATTGCAATATTCTTAACTATGTGCAGTTTGTTTCTCACAAAACAATGTGTTAttatacactaagtgtacaaaacattagaaacaccctccaaatattgagttgcgcccatttttgccctcagaacagcctcaattcttcgggggcatggactcaacaaggtgACAAAGACGCCAATGCATCCcacagttgggtcaagttggctggatgtcctttggggtaGTGGACCAtagttgatacacacaggaaactgttgagtatgaaaaacccaacagcgttgcagttcttgacacactcaagccggtgcgcctggcacctgctacaataccccgttcaaaggcacttcagtcTTTTGTCCTACCTATTCCCCCTCtgagtggcacacatacacactccatgtcccaattgtctcaaggcttaaaaatacttctTTAACTTGTCTCATCCCATTTATCTatactgactgaagtggattgaataagtgacatcaacaagggatcttagctttcacccggattcacctggtcagtctacgtcatggaaggtgttcctaatattttgtgcactcagtgtatgttaTCATAAGTTGCATTGCATTCAATAGGCTACCTTTTACATGTGATGGCAGAGACCGCCCTATCAAAGGGGATTTCTTTCTACATGGACTAGTTGTTTTTGCTTTAACTCTGCAAATAAACTTCTGACGGAGCTGTTTGCAA

Function

NR:

description
probable G-protein coupled receptor

GO: NA

KEGG:

id description
K08414 GPR61; G protein-coupled receptor 61

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568772.2 True 4971 mRNA 0.47 4 52731398 52752182

Neighbor

gene id symbol gene type direction distance location
LOC110494073 LOC106583524 coding upstream 31766 52639622 ~ 52699632 (+)
LOC110494072 LOC106565326 coding upstream 231854 52493771 ~ 52499544 (+)
zgc:113307 LOC106565325 coding upstream 276535 52444715 ~ 52454863 (+)
LOC110494068 LOC106565087 coding upstream 328975 52398555 ~ 52402423 (+)
LOC100301636 LOC100301636 coding upstream 338260 52389226 ~ 52393138 (+)
LOC110494076 NA coding downstream 57976 52810158 ~ 52974852 (+)
cfap20dc cssa12h3orf67 coding downstream 715953 53468135 ~ 53522586 (+)
LOC110494082 fam3d coding downstream 774035 53526217 ~ 53530187 (+)
LOC110494083 LOC106565334 coding downstream 779074 53531256 ~ 53542954 (+)
pb1 pb1 coding downstream 868567 53620749 ~ 53625211 (+)
G1462172 NA non-coding upstream 8731 52722280 ~ 52722667 (+)
G1462159 NA non-coding upstream 25815 52705323 ~ 52705583 (+)
G1462021 NA non-coding upstream 227524 52503175 ~ 52503874 (+)
G1461948 LOC106565086 non-coding upstream 308388 52422168 ~ 52423010 (+)
G1461938 NA non-coding upstream 316065 52415112 ~ 52415333 (+)
G1462399 NA non-coding downstream 28226 52780408 ~ 52780630 (+)
G1462526 NA non-coding downstream 204835 52957017 ~ 52957711 (+)
G1462527 NA non-coding downstream 208122 52960304 ~ 52966563 (+)
G1462765 NA non-coding downstream 529632 53281814 ~ 53317652 (+)
G1462923 NA non-coding downstream 778253 53530435 ~ 53530686 (+)
G1460249 LOC106565103 other upstream 1640509 51080132 ~ 51137770 (+)
LOC110494047 btg2 other upstream 1833954 50894903 ~ 50897444 (+)
G1459769 NA other upstream 1954326 50776529 ~ 50777072 (+)
atxn7l2a LOC106565127 other upstream 2295692 50427145 ~ 50437612 (+)
LOC110494957 qrich1 other upstream 2547702 50181045 ~ 50192699 (+)
G1464092 LOC106565344 other downstream 1421832 54147039 ~ 54189617 (+)
LOC110494100 LOC106565348 other downstream 1504199 54256327 ~ 54264616 (+)
LOC110494110 LOC106565356 other downstream 1719523 54471705 ~ 54474472 (+)
G1466124 NA other downstream 3244466 55996648 ~ 55998347 (+)
G1466131 NA other downstream 3263395 56015577 ~ 56016613 (+)

Expression


Co-expression Network