Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110494076 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048581.1 |
| NCBI id | CM023235.2 |
| chromosome length | 95212422 |
| location | 52810158 ~ 52974852 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| calcium-dependent secretion activator 1-like isoform X12 |
| id | description |
|---|---|
| K19933 | CADPS; calcium-dependent secretion activator |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021568782.2 | False | 5410 | mRNA | 0.50 | 30 | 52810158 | 52974852 |
| XM_036950119.1 | False | 5446 | mRNA | 0.50 | 31 | 52810158 | 52974852 |
| XM_036950120.1 | False | 5407 | mRNA | 0.50 | 29 | 52810158 | 52974852 |
| XM_036950116.1 | False | 3990 | mRNA | 0.55 | 30 | 52810418 | 52973683 |
| XM_021568778.2 | False | 5198 | mRNA | 0.51 | 32 | 52810418 | 52974852 |
| XM_021568787.2 | False | 4958 | mRNA | 0.51 | 28 | 52810418 | 52974852 |
| XM_021568788.2 | False | 4946 | mRNA | 0.51 | 27 | 52810418 | 52974852 |
| XM_036950117.1 | False | 5033 | mRNA | 0.51 | 31 | 52810418 | 52974852 |
| XM_036950118.1 | True | 4994 | mRNA | 0.51 | 29 | 52810418 | 52974852 |
52,660,000
52,680,000
52,700,000
52,720,000
52,740,000
52,760,000
52,780,000
52,800,000
52,820,000
52,840,000
52,860,000
52,880,000
52,900,000
52,920,000
52,940,000
52,960,000
52,980,000
53,000,000
NC_048581.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110494075 | LOC106565328 | coding | upstream | 57976 | 52731398 ~ 52752182 (+) |
| LOC110494073 | LOC106583524 | coding | upstream | 110526 | 52639622 ~ 52699632 (+) |
| LOC110494072 | LOC106565326 | coding | upstream | 310614 | 52493771 ~ 52499544 (+) |
| zgc:113307 | LOC106565325 | coding | upstream | 355295 | 52444715 ~ 52454863 (+) |
| LOC110494068 | LOC106565087 | coding | upstream | 407735 | 52398555 ~ 52402423 (+) |
| cfap20dc | cssa12h3orf67 | coding | downstream | 493283 | 53468135 ~ 53522586 (+) |
| LOC110494082 | fam3d | coding | downstream | 551365 | 53526217 ~ 53530187 (+) |
| LOC110494083 | LOC106565334 | coding | downstream | 556404 | 53531256 ~ 53542954 (+) |
| pb1 | pb1 | coding | downstream | 645897 | 53620749 ~ 53625211 (+) |
| LOC110494086 | LOC106565337 | coding | downstream | 695457 | 53670309 ~ 53678165 (+) |
| G1462399 | NA | non-coding | upstream | 29528 | 52780408 ~ 52780630 (+) |
| G1462172 | NA | non-coding | upstream | 87491 | 52722280 ~ 52722667 (+) |
| G1462159 | NA | non-coding | upstream | 104575 | 52705323 ~ 52705583 (+) |
| G1462021 | NA | non-coding | upstream | 306284 | 52503175 ~ 52503874 (+) |
| G1461948 | LOC106565086 | non-coding | upstream | 387148 | 52422168 ~ 52423010 (+) |
| G1462765 | NA | non-coding | downstream | 306962 | 53281814 ~ 53317652 (+) |
| G1462923 | NA | non-coding | downstream | 555583 | 53530435 ~ 53530686 (+) |
| G1462930 | NA | non-coding | downstream | 568399 | 53543251 ~ 53545720 (+) |
| G1463860 | NA | non-coding | downstream | 895179 | 53870031 ~ 53870400 (+) |
| G1463864 | NA | non-coding | downstream | 898054 | 53872906 ~ 53873220 (+) |
| G1460249 | LOC106565103 | other | upstream | 1719269 | 51080132 ~ 51137770 (+) |
| LOC110494047 | btg2 | other | upstream | 1912714 | 50894903 ~ 50897444 (+) |
| G1459769 | NA | other | upstream | 2033086 | 50776529 ~ 50777072 (+) |
| atxn7l2a | LOC106565127 | other | upstream | 2374452 | 50427145 ~ 50437612 (+) |
| LOC110494957 | qrich1 | other | upstream | 2626462 | 50181045 ~ 50192699 (+) |
| G1464092 | LOC106565344 | other | downstream | 1199162 | 54147039 ~ 54189617 (+) |
| LOC110494100 | LOC106565348 | other | downstream | 1281529 | 54256327 ~ 54264616 (+) |
| LOC110494110 | LOC106565356 | other | downstream | 1496853 | 54471705 ~ 54474472 (+) |
| G1466124 | NA | other | downstream | 3021796 | 55996648 ~ 55998347 (+) |
| G1466131 | NA | other | downstream | 3040725 | 56015577 ~ 56016613 (+) |
