pb1 (pb1)


Basic Information

Item Value
gene id pb1
gene name pb1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 53620749 ~ 53625211 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001160635.2
GGATCGCAGCTTTATAGGGTCACATCCGGTCACAATATACTGCCACGGGGGAGGAGCTTGACTAGCTAACGTTTCGAATGAATTGACTTTTTAACGAAACAATTTTGCTCAGGGAAACATACTACAATTCAGgTACCATCAGTTATACCAATGAGTTCGAAAAGGAGAAGGGCCACCTCTCCATCCAGTAGTAGTGTGAGCGGAGGAGACTTTGACGatgcctcctcctccactcccggAAGCGGGCGAAAGAGGAGAAGACCCTCTAATGTCCCTACGGTAGATCCTATTGCTGTGTGCCACGAGGTGTACAACACTGTCAGGGACCACAAGGACGACCAGGGAAGACTGCTTTGTGAGCTGTTCATCAGGGTACCAAAGAGAAGGAAACAGCCAGACTACTATGAGGTGGTGTCCCAGCCCATAGACATGACCAAGATCCAGCAGAAGCTCAAGTCAGAGGACTACCAAGATGTGGAGCAGCTCACTGCTGATTTCCAGCTCATGTTCAACAACGCCAAGACCTACTATAAGGTGACACACACACTATGTGGATTGAAGTCTAAGCTGAAAATCGATTGAAAACTTGATTGTGCTGTACTTTGTGATATTACACTTTGTGATAACAAACTTTGTTAGTCTTTGACTAGTAGGAAACACATCCTTTAGACACAGCAGGTTATTCATGCTTTTAtatcagggtttccgttaggataaTGTGGTACTGGACAACGTGACTTGGAAGATTTACATTTACTGGCCATTTTGAGAAATATACCGGAACCATATGCATTGGGTTTGTAACCCATTAGGGCGTCTACCTCCGGTGCTCGGAATGACAGAAATAACATTTACATTATGGTAattcatcttaacagaacattcaactcctgtaatgaagcagACAATAAAACGTCACTTTC

Function

symbol description
pb1 Influenza A virus RNA-directed RNA polymerase catalytic subunit; protein polybromo-1

NR:

description
polybromo-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001160635.2 True 923 mRNA 0.44 4 53620749 53625211

Neighbor

gene id symbol gene type direction distance location
LOC110494083 LOC106565334 coding upstream 77795 53531256 ~ 53542954 (+)
LOC110494082 fam3d coding upstream 90562 53526217 ~ 53530187 (+)
cfap20dc cssa12h3orf67 coding upstream 98163 53468135 ~ 53522586 (+)
LOC110494076 NA coding upstream 645897 52810158 ~ 52974852 (+)
LOC110494075 LOC106565328 coding upstream 868567 52731398 ~ 52752182 (+)
LOC110494086 LOC106565337 coding downstream 45098 53670309 ~ 53678165 (+)
si:dkey-7k24.5 LOC106565339 coding downstream 60949 53686160 ~ 53696488 (+)
LOC110493210 LOC106565341 coding downstream 168807 53794018 ~ 53861136 (+)
LOC110494090 LOC106565498 coding downstream 344286 53969497 ~ 53977112 (+)
LOC110493211 LOC106565499 coding downstream 403813 54029024 ~ 54043837 (+)
G1462930 NA non-coding upstream 75029 53543251 ~ 53545720 (+)
G1462923 NA non-coding upstream 90063 53530435 ~ 53530686 (+)
G1462765 NA non-coding upstream 303097 53281814 ~ 53317652 (+)
G1462527 NA non-coding upstream 654186 52960304 ~ 52966563 (+)
G1462526 NA non-coding upstream 663038 52957017 ~ 52957711 (+)
G1463860 NA non-coding downstream 244820 53870031 ~ 53870400 (+)
G1463864 NA non-coding downstream 247695 53872906 ~ 53873220 (+)
G1463865 NA non-coding downstream 248210 53873421 ~ 53873736 (+)
G1463871 NA non-coding downstream 253425 53878636 ~ 53878908 (+)
G1463872 NA non-coding downstream 253953 53879164 ~ 53879363 (+)
G1460249 LOC106565103 other upstream 2529860 51080132 ~ 51137770 (+)
LOC110494047 btg2 other upstream 2723305 50894903 ~ 50897444 (+)
G1459769 NA other upstream 2843677 50776529 ~ 50777072 (+)
atxn7l2a LOC106565127 other upstream 3185043 50427145 ~ 50437612 (+)
LOC110494957 qrich1 other upstream 3437053 50181045 ~ 50192699 (+)
G1464092 LOC106565344 other downstream 548803 54147039 ~ 54189617 (+)
LOC110494100 LOC106565348 other downstream 631170 54256327 ~ 54264616 (+)
LOC110494110 LOC106565356 other downstream 846494 54471705 ~ 54474472 (+)
G1466124 NA other downstream 2371437 55996648 ~ 55998347 (+)
G1466131 NA other downstream 2390366 56015577 ~ 56016613 (+)

Expression


Co-expression Network