LOC110494103 (LOC106565350)


Basic Information

Item Value
gene id LOC110494103
gene name LOC106565350
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 54363186 ~ 54384146 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568824.2
gaaatgtctaaaaaacatttttttctatgtcattatggggtattgtgtgtagattgatgaggggaaaaacaatgTAATAATTTTTCAAATAAGcttgtaacctaacaaaattaggaaaaagtcaaggggtctgaatactttccgaaggcactgtacgttTGGGAAATAAGTATAGAAGGACCAGCAGAGAAACTGAGTTAGATATCAACTAACTTATTACACAATTGAGACCCATGTCTGTTACTTCACAACACTAACAGGAAGTTGCATATCTTTATTTTGGCAGGAAAATATACCATCCGTCAGACCAAGGGCAGATAGTTCCTTAATCACTGACTACGTTGTTGTCCCAAAGGTTTTTGTAAACGAATGTATACCCATGCCAACAAAAATGATATCCTGTGGAGCTATAtaaaaacacatacatatacaagTTGAAAACAGCAAAAAGATTTGTGTGGCCATACTAAACAATTACCAAATGCAATACCTACAAACAGCTCTCAGGTAGAACacctttctgcctgccctctcactcctctgtcactctctctatcttatactcactctctcaccctctatctctctgtctctttctctgtctctctctcattcctacCTTCCCTCCAACCTCATTCTCCCATCTTACCTCCTCTCCACTATAAGGCTCAATGATCAACCCAGTTGGCGTAAATAGTAACTATTTCAGGGACAGGGGCGGGTTGGTCGTGGGGATAAATGACCGTCTGCTCTCCTGTTCCAGTCAGCATCCCAGGGAGCCTcaaacagagagatgagagaagcaCTCAAAAACCTGGTGCGGTACTGGAGGCTTTACCTGTTGACGTTGGTATTGGGAATTGGGGGATCATTTCAATTGGGGATGCAAGTTTCCATCATGGCTTCTCCAGCTGAGcaCATCCAGAGCTTTGTGAACCAGACCTGGCTGAGGAGGTATGAGGTTCCAGTAAGCGATTCAACCAACATGCTCATCTGGTCTTTCATAGTGTCTGTGTTCAGCCTGGGAGGATGGGTCGGGGCTATACACAGTGGCAGCCTCCCTGTCACCTACGGCAGGAAGAAAGTCCTGCTGTTCAACAACATAGTGGCCCTCGTAGCCGCTGTACTGATGGTCTTCAGTCCCATGGCCAAGTCCTTTGAGATGATCCTGCTGGGCAGATTCCTCTATGGATATAATGCTGGCCTGGGGTGGAACGTGCAACTGATGTATCTGGGCGAGAGTTCACCCAAGAAGCTGAGAGGATTCCtgaccatcaccatcaccatcttcAGTAGCCTGGGGAAAGTCACGGGTCAGATTGTTGGAATCAAggagCTGATGGGTACCGAAGCCATGTGGCCCTGGCTCATGGCCCTTGGTGGCCTCCCTGCCATCCTCCAATTTGTGACCTTGTTGTTCTTCCCTGAGGCTCCCCGCTACCTATACATCGACAAGGGAGACACTGAGGGCTGCAGAAAAGcCCTGCACTGGCTGTGGCAGGAGCATGACCTGCAGATGGAGATGGATGaaatggggaaggagagagcgagcaTGCAGGGCCAGAATGTTAAGACCATTTGGGATGTGCTGACTTCTCGCTGTGTCAGGTGGCAGCTGCTGGTTCTGGTCATCCCCTGTGCCGGCGTTCAGTTCTGTGGGTTTAACGCGATTTATTTCTACGCTTTTGACATCTTCGGTGAAGCTGGAGTAGCAGAGGACAAGATGCATTACCTGTCCATTGGTATCGGAACAACAGATCTCATCACCATCACTCTCTGTTCTCTGTTGATCGACCGTGCGGGCAGGAAGATGCTGATGGGCTATGGCTACCTGTTGATGGGAGTCATCATGTCCATCCTGATTGTTATGCTGTCTATCAAGGACCTGTACTCATGGGTCCCGTATGCTAACATCGCCCTCATCTTCTCTGTCATCTGCGTTTATGGACTAGGACCTTCTGGAATAGCCAGCATCCTCCCTGCAGATATCTTCCTGCAGGCCTGGAGACCGTCCGCTTACGTCATTAGCGGCTCCATCAACTGGTTAAGCCTGTTCTTGATTGGAATGTTCTTCCCCTTCCTAGTGGATGGACTGGGCCAGTTCTGCTTCCTGATCTTTGTAGCATACTGCCTCTTCAGCGCAGTGTTTGTACTCTACTTCATCCCAGAGACCAAAGGCAAGGGCATGGTGGAGATCATGGATGACTTTAACAAACTCAACTACAAGAACAGGGGAACAGAGACCGAAAAGGCTGACTTTGTTATGGCAACGAAATTTTAAAGAAATGTATTGAGTGGCTTGAGCGATattggtacactcttagaaaaaaaggg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568824.2 True 2334 mRNA 0.47 12 54363186 54384146

Neighbor

gene id symbol gene type direction distance location
slc2a11a gtr11 coding upstream 1400 54350845 ~ 54361786 (+)
LOC110493214 NA coding upstream 44463 54317729 ~ 54318723 (+)
LOC110493213 NA coding upstream 46646 54302462 ~ 54316540 (+)
LOC110494098 rab37 coding upstream 87166 54265416 ~ 54276020 (+)
LOC110494100 LOC106565348 coding upstream 98573 54256327 ~ 54264616 (+)
LOC118940476 NA coding downstream 42239 54426385 ~ 54434260 (+)
zgc:172271 LOC106565354 coding downstream 50215 54434361 ~ 54453753 (+)
sirt4 sirt4 coding downstream 69207 54453353 ~ 54461322 (+)
LOC110494110 LOC106565356 coding downstream 87813 54471705 ~ 54474472 (+)
frs3 LOC106565358 coding downstream 102914 54487060 ~ 54500326 (+)
G1464223 NA non-coding upstream 31161 54330258 ~ 54332025 (+)
G1464184 NA non-coding upstream 111908 54251040 ~ 54251278 (+)
G1464160 NA non-coding upstream 120881 54195807 ~ 54242305 (+)
G1464094 NA non-coding upstream 136336 54212866 ~ 54226850 (+)
G1464156 NA non-coding upstream 181674 54181079 ~ 54181512 (+)
G1464252 NA non-coding downstream 11172 54395318 ~ 54396302 (+)
G1464256 NA non-coding downstream 27094 54411240 ~ 54411465 (+)
G1464261 LOC100196839 non-coding downstream 33984 54418130 ~ 54418396 (+)
G1464264 NA non-coding downstream 35037 54419183 ~ 54419400 (+)
G1464263 NA non-coding downstream 36424 54420570 ~ 54420771 (+)
G1464092 LOC106565344 other upstream 173569 54147039 ~ 54189617 (+)
G1460249 LOC106565103 other upstream 3272297 51080132 ~ 51137770 (+)
LOC110494047 btg2 other upstream 3465742 50894903 ~ 50897444 (+)
G1459769 NA other upstream 3586114 50776529 ~ 50777072 (+)
G1466124 NA other downstream 1612502 55996648 ~ 55998347 (+)
G1466131 NA other downstream 1631431 56015577 ~ 56016613 (+)
LOC110494143 LOC106565389 other downstream 1704032 56088149 ~ 56127481 (+)
G1466224 gem other downstream 1835096 56219242 ~ 56220946 (+)

Expression


Co-expression Network