slc6a11a (LOC106565359)


Basic Information

Item Value
gene id slc6a11a
gene name LOC106565359
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 54592555 ~ 54622676 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568883.2
ACAGTCCTGCAGGCATTATTTTGGACCGTGTCAAATGACAAGTTAGTCACACTAAAGGTGCAGCTCTCATTCAACTATCTAGTCCACATGTCTTTGGGTCCCCCCTCGGGCAGAAGCAGCTGGCATCTTGACAGTGCTGTTATCCATAAAAGCTCCAGCAGCAGCAGACAATTGCACCAACCATTGACTCCACCAGCAGAACTTGCCTCCCgaaccctttctctctcactcgcaggatggctgcttctctctctgcaggcAAGCATGAGACTCTCCCAGGGCCGGTGCAGGACACCCAACAAAGTGTGAAGGAGCGCGGCCAGTGGGATAGCAAAATGGAGTTTATTCTAACTGTGGCTGGCGCTATTATTGGACTTGGAAATATATGGAGATTTCCCTATCTTTGTTACAAGAACGGTGGGGGGGCGTTCTTCATCCCGTACATCCTGTACCTGGTGACCTGTGGCATCCCTCTGTTCATCCTGGAAACGGCTCTGGGCCAGTACACTAGCCAGGGTGGCATCACCTGCTGGAGAAAGATCTGCCCGGTGTTTGAAGGAATGGGCTATGCCGCCCAAGTGATTACTATATATGGATGTATGACCTACATTGTGATTCTGGCGTGGGCTTTCCTCTACCTATTCTCATCCTTCAGTGTTGACCTGCCATGGGCAAACTGCAACAATGCCTGGAACACAGATGCTTGTGTGACATTTGGCAACAAGAATGCCAGCAGCAATTGGACTGGTTCTCTCCTGAATTCGTCATCTTCCGTTGTGGAGTTTTGGCAGCGGCGAGTGCTGCGGATATCAGATGGGATTGAGTCCTTGGGAGGTATTAGATGGGAGCTGGCTCTTTGTCTTCTACTGTCATGGATTGTCTGTTACTTCTGTATCTGGAAAGGAGTGAAGTCTACTGGGAAGGCAGCGTACGTCACGGCTACCTTCCCCTATGTCATGCTAGTGGTGTTATTCGTCAGAGGAGTGACCCTTCCAGGAGCTAAAGATGGCATCTTCTACTACTTGTATCCCAATACAACACGGCTAGCTGATCCACAGGTTTGGATGGATGCAGGAACGCAGATATTCTATTCTTACGCCATAGGCCTGGGCTACCTGACTTCTCTTGGAAGCTACAACAAATACAACAACAACTGTTACAAAGACTCCTTCTACCTGTGCTTGTTGAACAGTGGGACCAGCTTTGTGTCTGGTTTTGCCATCTTCTCCATACTGGGTCATATGGCTCGAGAACAGGGTGTGGACATCTCTGTGGTTGCTGAGTCAGGTCCTGGCCTGGTGTTCATAGTGTACCCCCAGGCAGTGTCCCTGCTCCCCTGCCCTCAGTTCTGGGCTGTCTGTTTCTTCACCATGATCATCCTATTGGGAGTGGACGGCCAGTTTGTCGGCCTTGAGAGCCTAATGACCTCAGTAACGGACGTCTACCCAAACCTCATCAGAAAAGGCTACCGGAGGgagatgctgctgctgctcatctgctgctgctgctacctgGTCGGACTCATCATGGTcacagagGGTGGCCTCTACATCATCCAGCTGTTTGACCATTATGTGTGCAGTGGTGCCACTCTGCTGCTCCTCTCCATATGCCAGTCACTCAGTATTGGATGGATATATGGTGCTGAACGCTTCTGTGACAACATTGAGGATATGATTGGCTATAGGCCCTCCTCCCTGGTCAAGTATTGTTGGCTCTACATTACCCCTACTATCTGCACAGGAACCTTTGTATTTTCCCTGCTGAAGTACAGCCCTTTGAAGTTCAACAACACATATTTGTACCCATGGTGGGCCTACTGGCTAGGCTGGTTCTTGGCTATGTCCTCCTTATCTCTCATCCCCATCACCATGGTCTACAAATTGTACTGGGGCAAAGGGACTTTCTGGCAGCGCCTCCAGACAATCTGTCGGCCAGCAGATGACCTTCCTATGATGATGAAGGAGGAGATGGTAGGTCTCTATGCTCTGGACCATGTTACTGACGATGAGAAGACATACAGCAATAATCTATAGACTGACTATTCTACTACTAGTTTtggggctggtttcccagacacagattaagcctagtggGACTGAGACCATGATTTTTCGTCCAGGACAAGGCTTAATATGTGTCCGGGAAACCAGCCTTTTTTTGTTGTCTATTTttgtaacttaaaaaaaaaatatatatatatatagatacacacacacagtgtcaagaAAACGTATGTGatccctttggaaatacctggatttctgcataaat

Function

NR:

description
sodium- and chloride-dependent GABA transporter 2-like

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568883.2 True 2274 mRNA 0.49 14 54592555 54622676

Neighbor

gene id symbol gene type direction distance location
frs3 LOC106565358 coding upstream 92229 54487060 ~ 54500326 (+)
LOC110494110 LOC106565356 coding upstream 118669 54471705 ~ 54474472 (+)
sirt4 sirt4 coding upstream 131233 54453353 ~ 54461322 (+)
zgc:172271 LOC106565354 coding upstream 138802 54434361 ~ 54453753 (+)
LOC118940476 NA coding upstream 158295 54426385 ~ 54434260 (+)
eno1b LOC106565361 coding downstream 30756 54653432 ~ 54662827 (+)
rereb NA coding downstream 40453 54663129 ~ 54677374 (+)
iho1 ccdc36 coding downstream 90835 54713511 ~ 54717607 (+)
slc26a6l LOC106565505 coding downstream 110387 54733063 ~ 54742363 (+)
LOC110494114 LOC106565368 coding downstream 170267 54792943 ~ 54805426 (+)
G1464609 NA non-coding upstream 26507 54565785 ~ 54566048 (+)
G1464283 NA non-coding upstream 154617 54437651 ~ 54437938 (+)
G1464280 NA non-coding upstream 157523 54433557 ~ 54435032 (+)
G1464615 NA non-coding downstream 130 54622806 ~ 54624208 (+)
G1464616 NA non-coding downstream 1648 54624324 ~ 54627415 (+)
G1464641 LOC106565501 non-coding downstream 10418 54633094 ~ 54633537 (+)
G1464659 rnf223 non-coding downstream 68502 54691178 ~ 54694992 (+)
G1464668 NA non-coding downstream 84294 54706970 ~ 54707336 (+)
LOC110494100 LOC106565348 other upstream 327939 54256327 ~ 54264616 (+)
G1464092 LOC106565344 other upstream 402938 54147039 ~ 54189617 (+)
G1460249 LOC106565103 other upstream 3501666 51080132 ~ 51137770 (+)
LOC110494047 btg2 other upstream 3695111 50894903 ~ 50897444 (+)
G1466124 NA other downstream 1373972 55996648 ~ 55998347 (+)
G1466131 NA other downstream 1392901 56015577 ~ 56016613 (+)
LOC110494143 LOC106565389 other downstream 1465502 56088149 ~ 56127481 (+)
G1466224 gem other downstream 1596566 56219242 ~ 56220946 (+)
LOC110494160 LOC105017078 other downstream 1957715 56575737 ~ 56584088 (+)

Expression


Co-expression Network