iho1 (ccdc36)


Basic Information

Item Value
gene id iho1
gene name ccdc36
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 54713511 ~ 54717607 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568879.2
TGTGAAAATACATTACCCACGAACCGGTCACGTCCAAAGACATTAAAACCAGGTCACGTTCCCTGACATCACTGAAGAGTCGACCTTACAGTTGAGGAGAGATCTTTGCTGAACCTTTATGAGGAACGACTGAGAGGGAACATTTGGGAAGGCGGGAGAAATGAATCCCAACGTGTGGAATATCAAAGAGATTTTAAGCATCCCAACTGGATCCATTGTGCCCAAGATCACCAGCAGGAATGGGGCTACCAGTGACTACTCCAGTTTGACAGACTCACAGTTCTTGTTTGGATCCCAGTTTTGGCCTGAAAACTCTCAGGGCATGTCACAGGACATGGGCTTTTCAAACAGAATATCCGGTAGCTCACAGTCACAGGAGGCAAGTGAGCCAAAGATTTTAAGCAATTACCATTCCAAACCATTCCTGTTCGGAGACGGAAAGGACAAAGTGAAGGTGCCAAGCTTTACAAGTGGCAAAGCAATTGGCATACTAGACAGGTTTGAAGAGGACAAGAAAAAAGCTAAAGAAAAGTGTGAGAGTGACATTCTCACCTCTGGATTTCTACAATTTCGTGAAAAACTTGAAAATATTAAGCTCTCTGTAAATCACATTGATGAGAGCACTACAACAGGCAACAAAGATTTTGCAGATTTTGCAAAGACATTGCAGCAAAACATAGCCAGTCTGCAGGATGGCTTTGCACAGCAGTTTGAGGCCTTGCTGAATAAAATGAGCTCACAGAATCAGATGCTAaaagagatggaggacagagtaGCCAAGACGGGTGTGGCGACTACAGAACTCAGCTCCCACATGCAGGGCCTGCAGCAGAATCTGGAGGTCCTGAGACATGAGCAGAGCCGAGATCAAAGCATGTTAGGAGAAGCCCTGTCCCTTCTAAGCACCTTGATTTCCCAGCACGGGTCCGAACCCCTCCCCACACCTGTCAGGGTGACAGAAAGCACGGTCCAGACATCCCCAGGACTGGTAGAGAGGTTCTGCCTGGTGAGTGAGGAGAAGAGGTACTTTGAAGGTGTTCGTCTCTGCGGTGCGACAGCGGTCACAGCGCCTTCTAAAGCAGTGGCATCATGTGGTGTAggggagacgggaggagaggcggCAGGGTGGCTGCACCCTGCAGATAGAGGAACCAGAGGAGGACCCTCAGAGACATGTGACCAGGGCCAGGCCGCAGTCCCCAGAGCTCTGTACCTTCCTGCAATGGTGGAGGAGGATCAGCTGGAGCGGTGTAGCCAGATGATGCTGGATGAGCCGGCTAAGACTTCCTGGCAGGGGGTGTACCCATACACCACACGCTCTACCGCTGTGACTCATGGACCAGGAAGAGGTGCCGAAGCCCTACACTATCCTATGCAGGGCCTACAAGACCCCAGCACATCGGGGGGCGCTCCAGCTCTACAGTACCCCATGCAAGGTTTTCAGGACCCCAGCAGGGCCTACGCGCTTCTACAAGATGTGACCATTAGGAGCACCCGCACCATCATGAACCCCCACTGCGACCCGGAGCAGAGCAGCCAGCCTGACCACAGTGAGCCTGCAGCAGTCCCCTCAGAGAGCCCCAGGGGCAGGAGCACCATGGCTGGACGTAGGTTCACCCAGAGAGGCCAGGGACAGAGGAAACAGCCATTCAGAAGCAGGAGGAGGGCACTAATGCCACCACAGACCAGGAGTAACGGTCGATTAGTGGGCAGGGGTGGGGATGAGAACCGACAGCCCCTCAAAAACCAAAGGAAGCAGGGAGCTGGATCGACTAGCAAGGAGCAGCATGATCCCAACAGGATGGAGATGGACACACTCATACCAGAAGCTCAGAAACGACAGCAGGACAAAGAGAAGAAGTCTAACAAAGCCACCGGAGGCTATCGCAACCCTTTCAGCTTGTGGTCCCAGGAAAGTAACAGCTCTGTGTGCGGTTCCACAGGGAACAATGCCAGGCCCCCCTGGGAAAAGACCCCATCGCCACCTGAGCCCCAGGCTGtctcagagagaaacagaggctTATGGCAGCTGTTTGACATGAACTGTGATTCTGACTGATGTCTGAAGGGGAATCAGGATGTCAGTGTAGGGAGGTATTGAGGAGGGAGTTGTTTGACAAGCTGTTGTTGTGTTTGGTTGATCTCAATGTAATTGGTTTTGACAACAAAATTCACCatcaaaaatgtactttttcatcGATTCCCTATGTTTGTGTTTTAGTGTTTTCAAAACCCTTTACACTGTTAATGTTACATCAGACTTTCCCATTAAGATTAAACTACAAATGAATGAGC
>XM_021568880.2
GTGAAAATACATTACCCACGAACCGGTCACGTCCAAAGACATTAAAACCAGGTCACGTTCCCTGACATCACTGAAGAGTCGACCTTACAGTTGAGGAGAGATCTTTGCTGAACCTTTATGAGGAACGACTGAGAGGGAACATTTGGGAAGGCGGGAGTGTGCCCAAGATCACCAGCAGGAATGGGGCTACCAGTGACTACTCCAGTTTGACAGACTCACAGTTCTTGTTTGGATCCCAGTTTTGGCCTGAAAACTCTCAGGGCATGTCACAGGACATGGGCTTTTCAAACAGAATATCCGGTAGCTCACAGTCACAGGAGGCAAGTGAGCCAAAGATTTTAAGCAATTACCATTCCAAACCATTCCTGTTCGGAGACGGAAAGGACAAAGTGAAGGTGCCAAGCTTTACAAGTGGCAAAGCAATTGGCATACTAGACAGGTTTGAAGAGGACAAGAAAAAAGCTAAAGAAAAGTGTGAGAGTGACATTCTCACCTCTGGATTTCTACAATTTCGTGAAAAACTTGAAAATATTAAGCTCTCTGTAAATCACATTGATGAGAGCACTACAACAGGCAACAAAGATTTTGCAGATTTTGCAAAGACATTGCAGCAAAACATAGCCAGTCTGCAGGATGGCTTTGCACAGCAGTTTGAGGCCTTGCTGAATAAAATGAGCTCACAGAATCAGATGCTAaaagagatggaggacagagtaGCCAAGACGGGTGTGGCGACTACAGAACTCAGCTCCCACATGCAGGGCCTGCAGCAGAATCTGGAGGTCCTGAGACATGAGCAGAGCCGAGATCAAAGCATGTTAGGAGAAGCCCTGTCCCTTCTAAGCACCTTGATTTCCCAGCACGGGTCCGAACCCCTCCCCACACCTGTCAGGGTGACAGAAAGCACGGTCCAGACATCCCCAGGACTGGTAGAGAGGTTCTGCCTGGTGAGTGAGGAGAAGAGGTACTTTGAAGGTGTTCGTCTCTGCGGTGCGACAGCGGTCACAGCGCCTTCTAAAGCAGTGGCATCATGTGGTGTAggggagacgggaggagaggcggCAGGGTGGCTGCACCCTGCAGATAGAGGAACCAGAGGAGGACCCTCAGAGACATGTGACCAGGGCCAGGCCGCAGTCCCCAGAGCTCTGTACCTTCCTGCAATGGTGGAGGAGGATCAGCTGGAGCGGTGTAGCCAGATGATGCTGGATGAGCCGGCTAAGACTTCCTGGCAGGGGGTGTACCCATACACCACACGCTCTACCGCTGTGACTCATGGACCAGGAAGAGGTGCCGAAGCCCTACACTATCCTATGCAGGGCCTACAAGACCCCAGCACATCGGGGGGCGCTCCAGCTCTACAGTACCCCATGCAAGGTTTTCAGGACCCCAGCAGGGCCTACGCGCTTCTACAAGATGTGACCATTAGGAGCACCCGCACCATCATGAACCCCCACTGCGACCCGGAGCAGAGCAGCCAGCCTGACCACAGTGAGCCTGCAGCAGTCCCCTCAGAGAGCCCCAGGGGCAGGAGCACCATGGCTGGACGTAGGTTCACCCAGAGAGGCCAGGGACAGAGGAAACAGCCATTCAGAAGCAGGAGGAGGGCACTAATGCCACCACAGACCAGGAGTAACGGTCGATTAGTGGGCAGGGGTGGGGATGAGAACCGACAGCCCCTCAAAAACCAAAGGAAGCAGGGAGCTGGATCGACTAGCAAGGAGCAGCATGATCCCAACAGGATGGAGATGGACACACTCATACCAGAAGCTCAGAAACGACAGCAGGACAAAGAGAAGAAGTCTAACAAAGCCACCGGAGGCTATCGCAACCCTTTCAGCTTGTGGTCCCAGGAAAGTAACAGCTCTGTGTGCGGTTCCACAGGGAACAATGCCAGGCCCCCCTGGGAAAAGACCCCATCGCCACCTGAGCCCCAGGCTGtctcagagagaaacagaggctTATGGCAGCTGTTTGACATGAACTGTGATTCTGACTGATGTCTGAAGGGGAATCAGGATGTCAGTGTAGGGAGGTATTGAGGAGGGAGTTGTTTGACAAGCTGTTGTTGTGTTTGGTTGATCTCAATGTAATTGGTTTTGACAACAAAATTCACCatcaaaaatgtactttttcatcGATTCCCTATGTTTGTGTTTTAGTGTTTTCAAAACCCTTTACACTGTTAATGTTACATCAGACTTTCCCATTAAGATTAAACTACAAATGAATGAGC
>XM_021568878.2
CCTGCACGTGATGAAACGTTTGTCCACTGTGGCCAAGCTCTGCTACAACACGGTTATTCATATCAAACAACTAGCTGTGTTCGTGTGTTGTTTATTACCGAAaaggagctagctagctagctaaccagaaCACGTTTCCCATCAGCCATATTTTTGGGGGGAACTAGCATATAATTGAGTTGTTAGCCAACTACATAGTTGGCTACTACATGACTACAGTGAAATGAATCCCAACGTGTGGAATATCAAAGAGATTTTAAGCATCCCAACTGGATCCATTGTGCCCAAGATCACCAGCAGGAATGGGGCTACCAGTGACTACTCCAGTTTGACAGACTCACAGTTCTTGTTTGGATCCCAGTTTTGGCCTGAAAACTCTCAGGGCATGTCACAGGACATGGGCTTTTCAAACAGAATATCCGGTAGCTCACAGTCACAGGAGGCAAGTGAGCCAAAGATTTTAAGCAATTACCATTCCAAACCATTCCTGTTCGGAGACGGAAAGGACAAAGTGAAGGTGCCAAGCTTTACAAGTGGCAAAGCAATTGGCATACTAGACAGGTTTGAAGAGGACAAGAAAAAAGCTAAAGAAAAGTGTGAGAGTGACATTCTCACCTCTGGATTTCTACAATTTCGTGAAAAACTTGAAAATATTAAGCTCTCTGTAAATCACATTGATGAGAGCACTACAACAGGCAACAAAGATTTTGCAGATTTTGCAAAGACATTGCAGCAAAACATAGCCAGTCTGCAGGATGGCTTTGCACAGCAGTTTGAGGCCTTGCTGAATAAAATGAGCTCACAGAATCAGATGCTAaaagagatggaggacagagtaGCCAAGACGGGTGTGGCGACTACAGAACTCAGCTCCCACATGCAGGGCCTGCAGCAGAATCTGGAGGTCCTGAGACATGAGCAGAGCCGAGATCAAAGCATGTTAGGAGAAGCCCTGTCCCTTCTAAGCACCTTGATTTCCCAGCACGGGTCCGAACCCCTCCCCACACCTGTCAGGGTGACAGAAAGCACGGTCCAGACATCCCCAGGACTGGTAGAGAGGTTCTGCCTGGTGAGTGAGGAGAAGAGGTACTTTGAAGGTGTTCGTCTCTGCGGTGCGACAGCGGTCACAGCGCCTTCTAAAGCAGTGGCATCATGTGGTGTAggggagacgggaggagaggcggCAGGGTGGCTGCACCCTGCAGATAGAGGAACCAGAGGAGGACCCTCAGAGACATGTGACCAGGGCCAGGCCGCAGTCCCCAGAGCTCTGTACCTTCCTGCAATGGTGGAGGAGGATCAGCTGGAGCGGTGTAGCCAGATGATGCTGGATGAGCCGGCTAAGACTTCCTGGCAGGGGGTGTACCCATACACCACACGCTCTACCGCTGTGACTCATGGACCAGGAAGAGGTGCCGAAGCCCTACACTATCCTATGCAGGGCCTACAAGACCCCAGCACATCGGGGGGCGCTCCAGCTCTACAGTACCCCATGCAAGGTTTTCAGGACCCCAGCAGGGCCTACGCGCTTCTACAAGATGTGACCATTAGGAGCACCCGCACCATCATGAACCCCCACTGCGACCCGGAGCAGAGCAGCCAGCCTGACCACAGTGAGCCTGCAGCAGTCCCCTCAGAGAGCCCCAGGGGCAGGAGCACCATGGCTGGACGTAGGTTCACCCAGAGAGGCCAGGGACAGAGGAAACAGCCATTCAGAAGCAGGAGGAGGGCACTAATGCCACCACAGACCAGGAGTAACGGTCGATTAGTGGGCAGGGGTGGGGATGAGAACCGACAGCCCCTCAAAAACCAAAGGAAGCAGGGAGCTGGATCGACTAGCAAGGAGCAGCATGATCCCAACAGGATGGAGATGGACACACTCATACCAGAAGCTCAGAAACGACAGCAGGACAAAGAGAAGAAGTCTAACAAAGCCACCGGAGGCTATCGCAACCCTTTCAGCTTGTGGTCCCAGGAAAGTAACAGCTCTGTGTGCGGTTCCACAGGGAACAATGCCAGGCCCCCCTGGGAAAAGACCCCATCGCCACCTGAGCCCCAGGCTGtctcagagagaaacagaggctTATGGCAGCTGTTTGACATGAACTGTGATTCTGACTGATGTCTGAAGGGGAATCAGGATGTCAGTGTAGGGAGGTATTGAGGAGGGAGTTGTTTGACAAGCTGTTGTTGTGTTTGGTTGATCTCAATGTAATTGGTTTTGACAACAAAATTCACCatcaaaaatgtactttttcatcGATTCCCTATGTTTGTGTTTTAGTGTTTTCAAAACCCTTTACACTGTTAATGTTACATCAGACTTTCCCATTAAGATTAAACTACAAATGAATGAGC
>XM_036950174.1
CCTGCACGTGATGAAACGTTTGTCCACTGTGGCCAAGCTCTGCTACAACACGGTTATTCATATCAAACAACTAGCTGTGTTCGTGTGTTGTTTATTACCGAAaaggagctagctagctagctaaccagaaCACGTTTCCCATCAGCCATATTTTTGGGGGGAACTAGCATATAATTGAGTTGTTAGCCAACTACATAGTTGGCTACTACATGACTACAGTGTGTGCCCAAGATCACCAGCAGGAATGGGGCTACCAGTGACTACTCCAGTTTGACAGACTCACAGTTCTTGTTTGGATCCCAGTTTTGGCCTGAAAACTCTCAGGGCATGTCACAGGACATGGGCTTTTCAAACAGAATATCCGGTAGCTCACAGTCACAGGAGGCAAGTGAGCCAAAGATTTTAAGCAATTACCATTCCAAACCATTCCTGTTCGGAGACGGAAAGGACAAAGTGAAGGTGCCAAGCTTTACAAGTGGCAAAGCAATTGGCATACTAGACAGGTTTGAAGAGGACAAGAAAAAAGCTAAAGAAAAGTGTGAGAGTGACATTCTCACCTCTGGATTTCTACAATTTCGTGAAAAACTTGAAAATATTAAGCTCTCTGTAAATCACATTGATGAGAGCACTACAACAGGCAACAAAGATTTTGCAGATTTTGCAAAGACATTGCAGCAAAACATAGCCAGTCTGCAGGATGGCTTTGCACAGCAGTTTGAGGCCTTGCTGAATAAAATGAGCTCACAGAATCAGATGCTAaaagagatggaggacagagtaGCCAAGACGGGTGTGGCGACTACAGAACTCAGCTCCCACATGCAGGGCCTGCAGCAGAATCTGGAGGTCCTGAGACATGAGCAGAGCCGAGATCAAAGCATGTTAGGAGAAGCCCTGTCCCTTCTAAGCACCTTGATTTCCCAGCACGGGTCCGAACCCCTCCCCACACCTGTCAGGGTGACAGAAAGCACGGTCCAGACATCCCCAGGACTGGTAGAGAGGTTCTGCCTGGTGAGTGAGGAGAAGAGGTACTTTGAAGGTGTTCGTCTCTGCGGTGCGACAGCGGTCACAGCGCCTTCTAAAGCAGTGGCATCATGTGGTGTAggggagacgggaggagaggcggCAGGGTGGCTGCACCCTGCAGATAGAGGAACCAGAGGAGGACCCTCAGAGACATGTGACCAGGGCCAGGCCGCAGTCCCCAGAGCTCTGTACCTTCCTGCAATGGTGGAGGAGGATCAGCTGGAGCGGTGTAGCCAGATGATGCTGGATGAGCCGGCTAAGACTTCCTGGCAGGGGGTGTACCCATACACCACACGCTCTACCGCTGTGACTCATGGACCAGGAAGAGGTGCCGAAGCCCTACACTATCCTATGCAGGGCCTACAAGACCCCAGCACATCGGGGGGCGCTCCAGCTCTACAGTACCCCATGCAAGGTTTTCAGGACCCCAGCAGGGCCTACGCGCTTCTACAAGATGTGACCATTAGGAGCACCCGCACCATCATGAACCCCCACTGCGACCCGGAGCAGAGCAGCCAGCCTGACCACAGTGAGCCTGCAGCAGTCCCCTCAGAGAGCCCCAGGGGCAGGAGCACCATGGCTGGACGTAGGTTCACCCAGAGAGGCCAGGGACAGAGGAAACAGCCATTCAGAAGCAGGAGGAGGGCACTAATGCCACCACAGACCAGGAGTAACGGTCGATTAGTGGGCAGGGGTGGGGATGAGAACCGACAGCCCCTCAAAAACCAAAGGAAGCAGGGAGCTGGATCGACTAGCAAGGAGCAGCATGATCCCAACAGGATGGAGATGGACACACTCATACCAGAAGCTCAGAAACGACAGCAGGACAAAGAGAAGAAGTCTAACAAAGCCACCGGAGGCTATCGCAACCCTTTCAGCTTGTGGTCCCAGGAAAGTAACAGCTCTGTGTGCGGTTCCACAGGGAACAATGCCAGGCCCCCCTGGGAAAAGACCCCATCGCCACCTGAGCCCCAGGCTGtctcagagagaaacagaggctTATGGCAGCTGTTTGACATGAACTGTGATTCTGACTGATGTCTGAAGGGGAATCAGGATGTCAGTGTAGGGAGGTATTGAGGAGGGAGTTGTTTGACAAGCTGTTGTTGTGTTTGGTTGATCTCAATGTAATTGGTTTTGACAACAAAATTCACCatcaaaaatgtactttttcatcGATTCCCTATGTTTGTGTTTTAGTGTTTTCAAAACCCTTTACACTGTTAATGTTACATCAGACTTTCCCATTAAGATTAAACTACAAATGAATGAGC

Function

symbol description
ccdc36 Predicted to be involved in homologous chromosome pairing at meiosis and meiotic DNA double-strand break formation. Predicted to act upstream of or within DNA recombination. Predicted to be active in condensed nuclear chromosome.

NR:

description
interactor of HORMAD1 protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568879.2 False 2295 mRNA 0.51 8 54713511 54717607
XM_021568880.2 False 2236 mRNA 0.51 7 54713512 54717607
XM_021568878.2 False 2358 mRNA 0.50 8 54713700 54717607
XM_036950174.1 True 2300 mRNA 0.51 7 54713700 54717607

Neighbor

gene id symbol gene type direction distance location
rereb NA coding upstream 36137 54663129 ~ 54677374 (+)
eno1b LOC106565361 coding upstream 50684 54653432 ~ 54662827 (+)
slc6a11a LOC106565359 coding upstream 90835 54592555 ~ 54622676 (+)
frs3 LOC106565358 coding upstream 213185 54487060 ~ 54500326 (+)
LOC110494110 LOC106565356 coding upstream 239625 54471705 ~ 54474472 (+)
slc26a6l LOC106565505 coding downstream 15456 54733063 ~ 54742363 (+)
LOC110494114 LOC106565368 coding downstream 75336 54792943 ~ 54805426 (+)
LOC110493217 LOC105909373 coding downstream 100727 54818334 ~ 54824057 (+)
kiaa1328 LOC106565370 coding downstream 107933 54825540 ~ 54865783 (+)
LOC110493220 LOC106565372 coding downstream 915600 55633207 ~ 55652540 (+)
G1464668 NA non-coding upstream 6175 54706970 ~ 54707336 (+)
G1464659 rnf223 non-coding upstream 18519 54691178 ~ 54694992 (+)
G1464641 LOC106565501 non-coding upstream 79974 54633094 ~ 54633537 (+)
G1464616 NA non-coding upstream 86096 54624324 ~ 54627415 (+)
G1464615 NA non-coding upstream 89303 54622806 ~ 54624208 (+)
G1465118 NA non-coding downstream 271432 54989039 ~ 54989364 (+)
G1465120 LOC100136012 non-coding downstream 272318 54989925 ~ 54990146 (+)
G1465162 NA non-coding downstream 299230 55016837 ~ 55017440 (+)
G1465176 NA non-coding downstream 310020 55027627 ~ 55027914 (+)
G1465224 NA non-coding downstream 345144 55062751 ~ 55062966 (+)
LOC110494100 LOC106565348 other upstream 448895 54256327 ~ 54264616 (+)
G1464092 LOC106565344 other upstream 523894 54147039 ~ 54189617 (+)
G1460249 LOC106565103 other upstream 3622622 51080132 ~ 51137770 (+)
LOC110494047 btg2 other upstream 3816067 50894903 ~ 50897444 (+)
G1466124 NA other downstream 1279041 55996648 ~ 55998347 (+)
G1466131 NA other downstream 1297970 56015577 ~ 56016613 (+)
LOC110494143 LOC106565389 other downstream 1370571 56088149 ~ 56127481 (+)
G1466224 gem other downstream 1501635 56219242 ~ 56220946 (+)
LOC110494160 LOC105017078 other downstream 1862784 56575737 ~ 56584088 (+)

Expression


Co-expression Network