LOC110493217 (LOC105909373)


Basic Information

Item Value
gene id LOC110493217
gene name LOC105909373
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 54818334 ~ 54824057 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110493217
ggaaataaatattattttacaCAGCAAGTCACCTGACAATAATGGTCTACTCTCCATTTTTATTTACCGGTCATTCTCCTGTCATGTCTCTGATATGAGCTGAGAAGTAAGGCAGGATTCCTAGGATTTTGCTTATTTTCTTTAGGGCTGCATAACCAAGTCCAAGTTCGTGGGCTAGAACTTGGACTTCAATGAGATGGAGATTCAGTTGAGCCATGCCAACCGCCAGGAAGCTGCACGCCAGAAACAGATGAGGAACTTTCAGGGAGTGTTCAAGGTACACTTTAGTTTATCATGGCGTAGGAATAACCTGATGATGGCTGAGATTGAAGAACTGAGGGCTGCactggagcagacagagagaggccgcAAAGTGGTCGAGCAGGAGCTGGTTGATGCCAGTGAGCGTGTGGGACTGCTGCAATCCCAGAACATAAGCCTCATCAACACTAAAAAGAAGCTGTAGGTTGACCTTACTCAGGTCCAAGGTGAAATGGAAGACACTGTCCAGGAAGCAAGAAATGCAGAGGAGAAGGCCAAGAAGGCTATTACTGATTAATCCAGCCTGAAGAAGAAGGAGCAGGACACCAGCTCTCACCTGGAGAGGGTGAAGAAGAACCTGGAGGTCACAGTGAAGGACCTGCAGCACCGTCTGGATGAGGCTGAGAATCTGGCCATGAAGGGCGGAAAGAAACAACTCCAGAAACCGGAGGCTAGGGTCCGTGAGCTGGAAGGTGAAGTTGACGCTGAACAGAGACATGGATGCTATCACAGGGGTCTGCAAATATGAGGGAAGAGTCAAGGAGCTCACATACCAGACTGAAGAGGACAAGAAAAATGTGAACAGGCTCCAGGATCTGGTTGACATGCTGAGGATGCCGTAAGTACAATACTTGGGACAATCACTGCAAGTAGAAGAGCAGGCCAACACTCACCTGTCCAGGTACAGGAAGCTGCAGCATGAGCTGGAGGAAGCTCAGGAGTCACAGGTCAACAAAATGAGAGCAAAGAGTTGTGAAGTTGGCAAGGTATAA

Function

NR:

description
myosin heavy chain, fast skeletal muscle-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110493217 True 1034 mRNA 0.48 7 54818334 54824057

Neighbor

gene id symbol gene type direction distance location
LOC110494114 LOC106565368 coding upstream 12908 54792943 ~ 54805426 (+)
slc26a6l LOC106565505 coding upstream 75971 54733063 ~ 54742363 (+)
iho1 ccdc36 coding upstream 100727 54713511 ~ 54717607 (+)
rereb NA coding upstream 140960 54663129 ~ 54677374 (+)
eno1b LOC106565361 coding upstream 155507 54653432 ~ 54662827 (+)
kiaa1328 LOC106565370 coding downstream 1483 54825540 ~ 54865783 (+)
LOC110493220 LOC106565372 coding downstream 809150 55633207 ~ 55652540 (+)
cita LOC106565373 coding downstream 841787 55665844 ~ 55717514 (+)
LOC110494139 mlrv coding downstream 897306 55721363 ~ 55724608 (+)
LOC110493221 LOC106565375 coding downstream 905729 55729786 ~ 55784821 (+)
G1464668 NA non-coding upstream 110998 54706970 ~ 54707336 (+)
G1464659 rnf223 non-coding upstream 123342 54691178 ~ 54694992 (+)
G1464641 LOC106565501 non-coding upstream 184797 54633094 ~ 54633537 (+)
G1464616 NA non-coding upstream 190919 54624324 ~ 54627415 (+)
G1464615 NA non-coding upstream 194126 54622806 ~ 54624208 (+)
G1465118 NA non-coding downstream 164982 54989039 ~ 54989364 (+)
G1465120 LOC100136012 non-coding downstream 165868 54989925 ~ 54990146 (+)
G1465162 NA non-coding downstream 192780 55016837 ~ 55017440 (+)
G1465176 NA non-coding downstream 203570 55027627 ~ 55027914 (+)
G1465224 NA non-coding downstream 238694 55062751 ~ 55062966 (+)
LOC110494110 LOC106565356 other upstream 343862 54471705 ~ 54474472 (+)
LOC110494100 LOC106565348 other upstream 553718 54256327 ~ 54264616 (+)
G1464092 LOC106565344 other upstream 628717 54147039 ~ 54189617 (+)
G1460249 LOC106565103 other upstream 3727445 51080132 ~ 51137770 (+)
LOC110494047 btg2 other upstream 3920890 50894903 ~ 50897444 (+)
G1466124 NA other downstream 1172591 55996648 ~ 55998347 (+)
G1466131 NA other downstream 1191520 56015577 ~ 56016613 (+)
LOC110494143 LOC106565389 other downstream 1264121 56088149 ~ 56127481 (+)
G1466224 gem other downstream 1395185 56219242 ~ 56220946 (+)
LOC110494160 LOC105017078 other downstream 1756334 56575737 ~ 56584088 (+)

Expression


Co-expression Network