LOC110493220 (LOC106565372)


Basic Information

Item Value
gene id LOC110493220
gene name LOC106565372
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 55633207 ~ 55652540 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567493.2
ATGACAGCCTTCTTCGTTCACCTCGGACCAATCGAAGATAGCGTAACTCAtaacgctgatgtccgggagggctctTGCCTGGACTACGGCGGTGTGGGAGCAACAGTCCACCGTttgcctcagtctggaggagttttTGGCGGAGCTCCGTGGCTTGAAACTTCCCACTGGCTTGACTCCACCCTTCCACCAGTGATTCTTCCCCTTAGCAACCACACGGTGAAGACATTGACTAGCAACCAGTCCTGTAGTGGTGAGGATGAGGTCTTTAAATACAGAGCCTACACCGTCACCTATCTACTTGTGTTCCCTATAGCATTGCTTTTCAACAGCGGAGCGCTGTTCGTGTTCCTGCGACTGAAGTCCAAACGCTCTCCCTCTTCCATTCTCATGACCAACCTTGCCCTATCAGACGCATGCTTCTCCCTTACCCTGCCGTTTCGATTGGCCTACTACTTCAGGGGCGCTCACTGGGACCTCCCTGATTGGCTGTGCCGACTCTGTGTGTTCTGCTTCTACCTCAACCTCTACACCAGCATTCTCTTCCTGACTGGACTGAGCGTGCTCCGTTGGCTGGCCGTGCTGAAGCCTCTTCATCATCGAGCCTTGGCCACGCCCCACCGAGCTTCATTGGCCTGTTTGGGCATCTGGTTGTTTGTGGGTGGAACTTCGGTACCCTTCCTATTTTCGGGGACCAGGGTGAGGGCGGGACTAACACGCTGCTTCGAGCCCCGTAACTCCGCCTCCTGGAAGAGGATCTTCATTCTCAACTATGTGGGCGTGACATTTGGCTTCCTGATCCCATTCATCACCATCCTTGGTTGCTACGGCAGCATCATCCGCCGACTGACAGCTACAGCCATAAGCCAGACGCTACAGACAGGAAGCCTGAAGAGTAGCCATGGGAGACGTCATCGCCAGTCTCTGTGTCTAGTCGCCATGGTGACCTGCACATTTCTACTGTGCTTCCTGCCCTATCACGTGGCTCGCTCGATGCACCTGCACGCGGTGGTGGGCGGGTGGGGCTGCGTTGTTACTGCAACACAGCAGCGGGTGTTGGTGGTGACGCTATGTCTGGCGGCGGCCAACAGCGTGCTGAACCCTCTGTTGTATTACTGTGCCGGGGAGTCCTTCAGAACGACCATACGCAATGCCTCGTCACGACGAcggtccctctcctccctcactcaggGCAGCTTGCTGAACTCTCACAGGAAGAGGAGTATTCCAACAAAACTCACAATGCTAGCCACACCCCTCGCTCAACCCCTATCCCTTCCTGAGTCCATACCAGACACACTCAGCCCTGTGAACAACAGTCCATAA

Function

NR:

description
cysteinyl leukotriene receptor 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567493.2 True 1326 mRNA 0.55 4 55633207 55652540

Neighbor

gene id symbol gene type direction distance location
kiaa1328 LOC106565370 coding upstream 767424 54825540 ~ 54865783 (+)
LOC110493217 LOC105909373 coding upstream 809150 54818334 ~ 54824057 (+)
LOC110494114 LOC106565368 coding upstream 827781 54792943 ~ 54805426 (+)
slc26a6l LOC106565505 coding upstream 890844 54733063 ~ 54742363 (+)
iho1 ccdc36 coding upstream 915600 54713511 ~ 54717607 (+)
cita LOC106565373 coding downstream 13304 55665844 ~ 55717514 (+)
LOC110494139 mlrv coding downstream 68823 55721363 ~ 55724608 (+)
LOC110493221 LOC106565375 coding downstream 77246 55729786 ~ 55784821 (+)
LOC110494133 LOC106565377 coding downstream 132487 55785027 ~ 55789929 (+)
LOC118940662 NA coding downstream 134638 55787178 ~ 55787306 (+)
G1465932 NA non-coding upstream 26818 55606145 ~ 55606389 (+)
G1465866 NA non-coding upstream 82953 55549921 ~ 55550254 (+)
G1465833 NA non-coding upstream 111067 55521903 ~ 55522140 (+)
G1465770 NA non-coding upstream 155622 55477292 ~ 55477585 (+)
G1465242 NA non-coding upstream 556480 55076458 ~ 55076727 (+)
LOC110494141 LOC106565378 non-coding downstream 164521 55811948 ~ 55819195 (+)
LOC118940477 NA non-coding downstream 172510 55824599 ~ 55828869 (+)
G1466021 NA non-coding downstream 173000 55825540 ~ 55827889 (+)
G1466081 NA non-coding downstream 278669 55931209 ~ 55932588 (+)
G1466095 NA non-coding downstream 299032 55951572 ~ 55952010 (+)
LOC110494110 LOC106565356 other upstream 1158735 54471705 ~ 54474472 (+)
LOC110494100 LOC106565348 other upstream 1368591 54256327 ~ 54264616 (+)
G1464092 LOC106565344 other upstream 1443590 54147039 ~ 54189617 (+)
G1460249 LOC106565103 other upstream 4542318 51080132 ~ 51137770 (+)
LOC110494047 btg2 other upstream 4735763 50894903 ~ 50897444 (+)
G1466124 NA other downstream 344108 55996648 ~ 55998347 (+)
G1466131 NA other downstream 363037 56015577 ~ 56016613 (+)
LOC110494143 LOC106565389 other downstream 435638 56088149 ~ 56127481 (+)
G1466224 gem other downstream 566702 56219242 ~ 56220946 (+)
LOC110494160 LOC105017078 other downstream 927851 56575737 ~ 56584088 (+)

Expression


Co-expression Network