LOC118940477


Basic Information

Item Value
gene id LOC118940477
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 55824599 ~ 55828869 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037018.1
TTTAATAAATGCTTGCTGTTTCCTCATAGAACATGTAATCTCCTTGGGGAGGACGAGCTGGCCAGTCAGTGATCtagaggatgagctggccaatcaacGGTCTACTTGCGTGAATATTTTAATGACCAGTGTACACCCACACAGAATAGCTGCTTTTTAACATAGCTTCCCTTCcaatattgtttatttaactattTCACTCTCATTTTGTAAGTAGTTATATTTCATATAAATCTGGAAACACTAGACAGTTACTTTAAGTTATATTTTACTCCAATATAAGTCACGAGTCCCCTTTGGCACATTGAAGTTAGTTGTGTGACCTTCTGACGGTCGGTGAAGGGAAGTTGGTGTTCTTTCTTATGACAAAAGAGATTAAAATCTTTGAATCGGTTCCTGTGTTTGTTTAGCCCTCCATGCACTTTCCATTCGGCACCCTCTCCTGAAGACAAGCACTCTGTCTGACGGGAGCAAGAAGGCCAAAGGGAAAGCCATGAGATGCGCGGAGTTTATCCAGCCGGTAAAGGAGAAGCCATGGACAGACTCTGCAGTGGCCCGGAGAATGGTGACCACAGCCCTGGGGCTGCGGAGAGGTGGAGCGCTCTCACAACATTTCTGACCGCTACAGCAGGAATGCCAGGCTACAACTGGACGACACACCTACTGATGTCCTGGCTAATAAATAACTGTCAAACCAGTGCCATcctatgtcttgttcctgttttCAAGTTCCTAGTGTTAATGCCACTGTAGCACTCGAGTGCCTGATTTACAGTATAGGGCCAACCTAAACTACACTATGCTGGCTtggatattttattttcatggcCAACTCAGTAAAGCTTGGATTGGCccctttttgggggggagggggtttgGCAACAGTTATTAATGTGTTTTACTTAGTAATTTGTTCTATGCCAACCACTTACATGTCAGTAACACTCTGAATGCGTCCATATATAGATGGATAAGGTAATACTCAAGAGTTGGTGATGCATCGCAAACAGAGGCACCAGTTGTATAATTCCTATCAGTGGAGACTGTTGAGGGGAGgtcggctcataataatggctgaaacggagcaaatgaaatggcatcaaacgcatggaaaccatgtgtttgatgtagttgatactattccgctccagccattaccacgagcccgccCTCCCCAATTGCAAACTTGCATAGCAAAAATATGTAAAGATGCAGTGACCTTAAATCAAATGTAAAGATGACATTAAATTAACACACTGTCTGGAGATGGGAATAAAAAGGCAGGATGTGGACAATTTTGTTAGGAAAGCAAAGCAACTCTATCATTTATGTTGTAGGTTTCAGATAAATATATAGGTGATTTAATTTACTTTTTGTAAAAAGATCTATGTAAATAAAG
>TU1676837
AGCACTCTGTCTGACGGGAGCAAGAAGGCCAAAGGGAAAGCCATGAGATGCGCGGAGTTTATCCAGCCGGTAAAGGAGAAGCCATGGACAGACTCTGCAGTGGCCCGGAGAATGGTGACCACAGCCCTGGGGCTGCGGAGAGGTGGAGCGCTCTCACAACATTTCTGACCGCTACAGCAGGAATGCCAGGCTACAACTGGACGACACACCTACTGATGTCCTGGCTAATAAATAACTGTCAAACCAGTGCCATcctatgtcttgttcctgttttCAAGTTCCTAGTGTTAATGCCACTGTAGCACTCGAGTGCCTGATTTACAGTATAGGGCCAACCTAAACTACACTATGCTGG

Function

NR:

description
R3H and coiled-coil domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037018.1 False 1399 mRNA 0.42 3 55824599 55828869
TU1676837 True 355 lncRNA 0.52 3 55825050 55828276

Neighbor

gene id symbol gene type direction distance location
LOC110494141 LOC106565378 coding upstream 6273 55811948 ~ 55819195 (+)
LOC110494133 LOC106565377 coding upstream 34670 55785027 ~ 55789929 (+)
LOC118940664 NA coding upstream 34988 55789483 ~ 55789611 (+)
LOC118940663 NA coding upstream 35561 55788910 ~ 55789038 (+)
LOC118940659 NA coding upstream 36283 55788168 ~ 55788316 (+)
LOC110493222 NA coding downstream 104703 55933572 ~ 55946587 (+)
LOC110494134 LOC106565385 coding downstream 201254 56030123 ~ 56039321 (+)
LOC110494131 LOC106565386 coding downstream 227422 56056291 ~ 56081057 (+)
LOC110494143 LOC106565389 coding downstream 259280 56088149 ~ 56127481 (+)
LOC110494144 LOC106565388 coding downstream 279513 56108382 ~ 56112085 (+)
G1465932 NA non-coding upstream 218210 55606145 ~ 55606389 (+)
G1465866 NA non-coding upstream 274345 55549921 ~ 55550254 (+)
G1465833 NA non-coding upstream 302459 55521903 ~ 55522140 (+)
G1465770 NA non-coding upstream 347014 55477292 ~ 55477585 (+)
G1466081 NA non-coding downstream 102340 55931209 ~ 55932588 (+)
G1466095 NA non-coding downstream 122703 55951572 ~ 55952010 (+)
G1466096 NA non-coding downstream 123190 55952059 ~ 55952379 (+)
G1466097 NA non-coding downstream 123544 55952413 ~ 55952619 (+)
G1466098 NA non-coding downstream 124035 55952904 ~ 55953120 (+)
LOC110494110 LOC106565356 other upstream 1350127 54471705 ~ 54474472 (+)
LOC110494100 LOC106565348 other upstream 1559983 54256327 ~ 54264616 (+)
G1464092 LOC106565344 other upstream 1634982 54147039 ~ 54189617 (+)
G1460249 LOC106565103 other upstream 4733710 51080132 ~ 51137770 (+)
LOC110494047 btg2 other upstream 4927155 50894903 ~ 50897444 (+)
G1466124 NA other downstream 167779 55996648 ~ 55998347 (+)
G1466131 NA other downstream 186708 56015577 ~ 56016613 (+)
G1466224 gem other downstream 390373 56219242 ~ 56220946 (+)
LOC110494160 LOC105017078 other downstream 751522 56575737 ~ 56584088 (+)

Expression


Co-expression Network