dnai1.2 (dnai1)


Basic Information

Item Value
gene id dnai1.2
gene name dnai1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 56130667 ~ 56167366 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950223.1
TGGCACGGCAACTGATAAACACTTGCAGCAGCTGGAGTGGAGTTACAGTTTGAAAACTTTTCATCTCTCTATTTAAAAAATTGTTGTATAGCGCTCGTTATCTATACAATAAAAGGGTATTTCTTATCAATAGTGTGTTATCTCTTGGACACAATGCCTGTAGTTCACAAGACAGGAACTGTGAAATCCAAGCAGGGGTCAAACACTCAGTCCCAGAAGGCACCCACAGCAAAGACTGCAAAAGCTGCCAGCAAGAAAAAGGATGAGGAGGATGGAACAGAGATGGGTGAAGGAGATGAGTGGATGCAAGGGAAGACTCTGATCAAGCCACTTGACCAGCTGGATCTCACTGAGGCTGAGTTAAAAGAGGAATTCACCAGGATCCTGACTGCTAACAACCCACATGCCCCTCAGAATATCGTCCGCTACAGCTTCAAGGAACGTTCTTACAAGCCAATCAGCAGTGTGGATCAGCTGGCTGTCCACTTTGTGCTGGAGGGTAACCTGTTGCACCAGGACTCAGATGAGGCACGCAGACAGAGGGCCAAACAGGGCCTCCCTGAGGAAAAAGCCACAGTTGAGACCGCTGTAGCTGAAAAGCCTGAGACTCCGGCTGCAGGTGGGGAGGATGCAGGGGATGtggaggagggcgggggagaggagagagctgacAGTGTGGAGTCCAAGGCTGGCAAGAAGGAGCAGAAAATCACCAACCAGTTCAACTTCAGTGAGAGGGCCTCCCAAACTCTCAACAACCCACTCAGGGAAAGGGGATGTCAGACAGAGCCCCCTCCTCGTGCAAACTTCTCAGCTACTGCCAATCAGTGGGAGATCTATGACGTGTATTTGGAGGTGCTGCAGAAGCAGGAGAAGAACAAGGAGAAGGCGAAAGCCGTCCCCAAGAAGGACGACGACAAAGGCAAGAAGAAGATGATGCTGGTGGAGACCCAGAgtgatgacatcaccaaagtggCCAAGGTGGCCAAGATCATCGAGCGGATGGTGAACCAAAACACGTTTGACGACATTGCACAAGATTTTAAGTACTTTGAGGATGCTTCTGATGAGTACCGGGAGCAGGAGGGCACCCTTCTCCCCCTCTGGAAGTTTCAGTACGACAAAGCCAAGAGGCTGTCTGTCACTGCCCTCTGCTGGAATGAAAGCTACAAAGATTTGTTTGCCGTCGGCCTTGGATCATATGACTTCACCAAGCAGGGGCGGGGCATGCTGGTGTTCTACTCCCTGAAAAACTCCACTTTCCCTGAGTATATCTACCCCACGACGTCGGGCATCCTGTGCCTGGACATCCACAAGCACCTGCCCTACCTGGTGGCCGTGGGCTTCTACGACGGCTGCGTGGCCGTCTACAACCTCAAAGAAGAGACGCTGCAGCCCATCTATAAGAGCACCGCCAAGTCTGGCAAGCACACCGACCCTGTGTGGCAGGTGAAGTGGCAGAAGGACGACATGGACAACAATCACAACTTCTTCTCTGTGTCATCTGATGGCCGTGTGGTGTCATGGACTCTTGTCAAGAATGAGCTGGTCTTCACAGACATCATCAAGCTGTCGTTGGCGGGAGCTGTGTCAGAAGGACCAGAAGGCGTGCAACTTCCCATCATGGCTTGTGGAACATCCTTCGACTTCCACAAACAGATTGACTACCTCTTCCTGGTTGGCACGGAGGAGGGCAAGATTCACAAGTGCTCCAAGGCTTACTCCAGCCAGTTCCTGGAGACCTACAATGCCCATAACATGGCAGTGGACGCAGTTAAGTGGAACCACTTCCACACCAAGGTCTTTATATCCTGCAGCTCTGATTGGACCGTCAAGATCTGGGACCACACCATCAAGACCCCAATGTTCACCTTTGACCTGAACGCCTCTGTGGGAGATGTGGCATGGTCTCCTTACTCCTCCACTGTCTTCGCTGCAGTCACCACTGATGGCAAGGTTCATACCTTTGACCTTAGCATCAACAAATATGAGGCCATCTGCCAGCAGCCGGTGGTGGCCAAGAAAAAGACTAAGCTGACTCACATTGAGTTTAACCCCGTCTACCCCATCATCATCGTGGGAGACGACCGAGGATATGTTACCAGCCTCAAGCTCTCGCCTAACCTGCGCAAAAAACCCAAGGAGAAGAAGGGTCAGGAGCTGCCCAAGGGGCCTGAGGTGGAGATCGCCAAGATGGAGAAGCTGCTGAGTTTACTGCGGGAGCCAGAGAACAGCAATGCTTAGAAACTATGACAACATCATGCAGGACTGTAGTCGCCCACTATTTCTACTACTGCACTCCAGTTATAAACCCACCACCAGTCATGCCTTATTACTACTGTCTTCTGTCTTCTAAAGCTGCATACTAAAGCCACCGTTCCTTCCCATGTTGAAGTATAGTGCGGTCTATTGAATCTGTGCAATCTAGCCTACTGTTTTTCTCACTCTTGCGCTGTGCACTATACTAAACATATAGATAGTCAGTGTGCAACCAGCAACGTCTCCTTTACCTGATGCGGCAAAACCACTCAAGCTTTGGGTTATATTTTTTGGTTTTGGAAAACAGAGTAGCTCAGTTTGTTTGGAAatattaataaaaaatatttatcaTTC
>TU1677370
AGGTTCATACCTTTGACCTTAGCATCAACAAATATGAGGCCATCTGCCAGCAGCCGGTGGTGGCCAAGAAAAAGACTAAGCTGACTCACATTGAGTTTAACCCCGTCTACCCCATCATCATCGTGGGAGACGACCGAGGATATGTTACCAGCCTCAAGCTCTCGCCTAACCTGCGCAAAAAACCCAAGGAGAAGAAGGGTCAGGAGCTGCCCAAGGGGCCTGAGGTGGAGATCGCCAAGATGGAGAAGCTGCTGAGTTTACTGCGGGAGCCAGAGAACAGCAATGCTTAGAAACTATGACAACATCATGCAGGACTGTAGTCGCCCACTATTTCTACTACTGCACTCCAGTTATAAACCCACCACCAGTCATGCCTTATTACTACTGTCTTCTGTCTTCTAAAGCTGCATACTAAAGCCACCGTTCCTTCCCATGTTGAAGTATAGTGCGGTCTATTGAATCTGTGCAATCTAGCCTACTGTTTTTCTCACTCTTGCGCTGTGCACTATACTAAACATATAGATAGTCAGTGTGCAACCAGCAACGTCTCCTTTACCTGA
>TU1677371
AGCTGGAGTGGAGTTACAGTTTGAAAACTTTTCATCTCTCTATTTAAAAAATTGTTGTATAGCGCTCGTTATCTATACAATAAAAGGGTATTTCTTATCAATAGTGTGTTATCTCTTGGACACAATGCCTGTAGTTCACAAGACAGGAACTGTGAAATCCAAGCAGGGGTCAAACACTCAGTCCCAGAAGGCACCCACAGCAAAGACTGCAAAAGCTGCCAGCAAGAAAAAGGATGAGGAGGATGGAACAGAGATGGGTGAAGGAGATGAGTGGATGCAAGGGAAGACTCTGATCAAGCCACTTGACCAGCTGGATCTCACTGAGGCTGAGTTAAAAGAGGAATTCACCAGGATCCTGACTGCTAACAACCCACATGCCCCTCAGAATATCGTCCGCTACAGCTTCAAGGAACGTTCTTACAAGCCAATCAGCAGTGTGGATCAGCTGGCTGTCCACTTTGTGCTGGAGGGTAACCTGTTGCACCAGGACTCAGATGAGGCACGCAGACAGAGGGCCAAACAGGGCCTCCCTGAGGAAAAAGCCACAGTTGAGACCGCTGTAGCTGAAAAGCCTGAGACTCCGG

Function

symbol description
dnai1 Predicted to enable dynein heavy chain binding activity and dynein light chain binding activity. Involved in determination of left/right symmetry; flagellated sperm motility; and outer dynein arm assembly. Located in cilium. Part of outer dynein arm. Implicated in Kartagener syndrome and primary ciliary dyskinesia 1.

NR:

description
dynein intermediate chain 1, axonemal

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950223.1 False 2613 mRNA 0.50 20 56130667 56167366
TU1677370 False 560 lncRNA 0.48 2 56130766 56145188
TU1677371 True 584 TUCP 0.48 6 56162860 56167337
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Neighbor

gene id symbol gene type direction distance location
LOC110494129 LOC106565491 coding downstream 114569 55989707 ~ 56016098 (-)
LOC110494136 LOC106565490 coding downstream 142576 55981511 ~ 55988091 (-)
LOC110494137 LOC106565384 coding downstream 159666 55954473 ~ 55971001 (-)
LOC110494121 LOC106565382 coding downstream 197256 55926038 ~ 55933411 (-)
LOC110494118 LOC106565381 coding downstream 204957 55884873 ~ 55925710 (-)
LOC110494148 LOC106565392 coding upstream 42110 56209476 ~ 56221662 (-)
pnp4a LOC106565393 coding upstream 80720 56248086 ~ 56254452 (-)
LOC110494155 LOC106565397 coding upstream 287714 56455080 ~ 56461097 (-)
LOC110494154 LOC106565398 coding upstream 306587 56473953 ~ 56485940 (-)
elmo2 LOC106565399 coding upstream 328874 56494856 ~ 56530610 (-)
G1466494 NA non-coding downstream 18039 56110249 ~ 56112628 (-)
G1466464 NA non-coding downstream 52714 56025359 ~ 56077953 (-)
G1466485 LOC106565386 non-coding downstream 55108 56074152 ~ 56075559 (-)
G1466487 NA non-coding downstream 62824 56066385 ~ 56067843 (-)
G1466432 NA non-coding downstream 179577 55950796 ~ 55951090 (-)
G1467342 NA non-coding upstream 87213 56254579 ~ 56254788 (-)
G1467345 NA non-coding upstream 96624 56263990 ~ 56264229 (-)
G1467351 NA non-coding upstream 103605 56270971 ~ 56271170 (-)
G1467355 NA non-coding upstream 112168 56279534 ~ 56279848 (-)
G1467371 NA non-coding upstream 135245 56302611 ~ 56302858 (-)
G1464954 NA other downstream 1402772 54726796 ~ 54727895 (-)
G1464950 ccdc36 other downstream 1413177 54716104 ~ 54717490 (-)
G1464933 NA other downstream 1456748 54672252 ~ 54673919 (-)
G1464551 NA other downstream 1666965 54462671 ~ 54463702 (-)
hig1a hig1a other upstream 1062141 57229440 ~ 57233433 (-)
G1470802 NA other upstream 3507175 59674541 ~ 59676694 (-)
LOC110494253 LOC106565590 other upstream 3823609 59990975 ~ 59999740 (-)
LOC110494257 LOC106565586 other upstream 3939303 60104033 ~ 60110249 (-)
dnai1.2 dnai1 other upstream 17672 56130667 ~ 56167366 (-)

Expression

dnai1.2(dnai1) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 20.
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dnai1.2(dnai1) Expression in each Bioproject

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dnai1.2(dnai1) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network