zgc:109965 (LOC106565507)


Basic Information

Item Value
gene id zgc:109965
gene name LOC106565507
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 56192761 ~ 56202852 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568923.2
TCTATGTCCACGCTGCGAGGAGGTGTGGAGAGAACTCGCTGTCTGatcactgagagggagagagcctaGGAGACAGATTTCTGTGTCAGGACAGTAAGGGGATCTCATCAGGACGTGGAGCCATGCTGCTGAGAATTTTGCCCCGAGCAGCTGCACTGCTCATGCTGTGTGTTCAGCACCTGCATGCCTCTGTGCTGCCTACTGTATCCTCCTACGAGTTCACTGCCTATAGGATGCAGCAGTATGCCATTCAGCAGGAAAAACATGGTTGTCGCGGTGCCATCGTGCAGGCGGAGGCCCGCTCAGCAGACGAACCAGTGTTAACACGACGCTGTGTCATCATGAAGCTGCCGGACTTCACCGTGGAGCGATACTTTGAGGCTCTGAGGCAGAGCGCTGCCGCTGTACTCCTCCTGCTACCCAAAAACATGTCCGCTGTCCCCCAGGATATCATACAGACATTCATGGTGAGTGAGAGCGAAGCGTTGTTAAAGGATACCATCATGCCTGTGTACGTGACCCCGGAGGACGAGCAGCTCCTTTATATGTACGAAGAGGTCAAGCATGCCGCAGCCTCTCGCACCTCCTCTATACTGGTCCGAGTGTTCCGTAGTATGGTCACAGCCACCGTATTTCAGATTCTAGTGAGCAACACCAACCCCATCAAGCCCATCACTGACAGTACAATCATTACTCTGGAGGGTGTACTTCCTGGTGCTGGAGAGGATGCGCCCACCATCGTTATCACGGCCCACTACGACTCCTACGGCCTTACTCCATGGCTGTCATATGGAGCAGACTCCAACGGTAGCGGAGTCATCATCTTGCTTGAGCTGGTCCGTCTTTTCCAGAAACTTTATAGCAACCCCCACAGCCAGCCTGCataccatcttcTTTTCTCCCTGACTGGCGGTGGGAAGTATAACTTCCTGGGTACCAAGAGGTTTATAGAGGAGAATATGGATCATGCCGAGACCAGCCTTCTCCATGACAATGTGGCATTTGTTCTGTGTCTGGACACGCTGGCCAATGGGGACGACATGTTCCTGCACGTGTCCCGCCCCCCCAAACCTGGCACCCCTCAGCATGCCTTCGTACAACATCTGGAGCAGGTAGTTTCTTCCCGGTTCCCTTGGGTGAGGTTTGGGATGGTCCACAAGAAGATCAACTTGGGGGAGTCCACTGTTTCCTGGGAGCACGAGCGCTATGCCATGCGCAGGATACCAGGATTCACGCTGTCTCACCTGGAGGACCCCAAAGCTGAACTCAGAGGCTCCATCCTGGACACTGTGTTGCACGTGGACTTGAGGAAGATGAAGCGCAATGCCATCGTTATTGCAGAATCGCTAGCTCGGTTTATGTATAATCTCTCTGACAAGGGTTCCCCAAAAGACATACAGGTCTTCAAGGGCCAAATGGAGTTTCAGGACAGTCGCATGTCTAGCCTGATGTCCTTCCTGACGTCCATCCCACGGGCAACACAGCTGGATaaggatcccaaacacaccataCTGGTGAACACTCTGGAACATGAGCTGAGGTACTATCTGCACCAGGTCCACAGACACACCTTCCGCCAAGACAAGAGGGATCCTGAACTTACCTTTTTTGACCAAATGGAGCAACCAATGATGATGTATAGGATTAAGCCAGCAGCCTTTGACCTCTTCCTTGGGGGCTGTATAGCTGCTTACCTGGCGATAGTCTACTATGCCATCGAGAATTGTGGATATCTCTACACCAAACTGAAAGCAGCTGTGAAGTCCAAACAGAAGTAAGGTTGTGACCAATGCTTTGAAGACCTGGAAGTCAGAGTTGGGTTTTTTAGGTCCAATGGAAAATACTTTTGTGCAAGAACTGACACTGAATAGGGAATTGTGTAGGCCATATACTGCATTTCTGTTTGAACTATCTCAACTGAACAAGCCCATGGGGCATTGTTGAAAAGGTTATTTAAAAATAATTTGTCGTCCATGTTAATggtgacaacaacaaaaatgtcacCAATTTGTATGAGATGCATTTAGTTACTTTTACGGTTGTTTTAAATCAACAGAAACCCTCTGAATAACATGAACTGTTTGTTTTATTTTCAAAAGTTTCGCTTTTTCTATTAATAACATTTCTAGCTACATTTGGATTATCGTATAAAGAAACACTCTCAGCCGAAGCCATCTTTAATTCTTTAATGTATCTTATTTTTGTTTTTCTAAAGAGCAATGAACTGCACATTGCATAACTTCAAGCCCCCGTCATGCTATAGGACTGAGCACCCCCTAGCGTATGTATTTTTCGTATAACACTGTTGTTGAATATCCTTGAATGTCCTCTGTAGTTTTCGATAAACTTGTGATCACACCTCAGTGGTTGAGATAAAGAGCGTTAGCAAAACCTCTGTGCCATTACTCTTGCTAAATAACTAAAGCAAGTCATTCAAGTGTATCAAACTACCTTTCCAACGTGAAGGCCGTGCCCTCGAGTTGTTTTACTTTCACAGGCTCGGCTACACTTATTTGAAAGGACGTGCGAGCCTACAAAGAAGAACAACAAACTTCTAGACACGTGGATCAGCCAGACACAGCATCTTCTAGAATGTCAGCTAATGATCAGTGCCAACATGAGGGAGTGGAGAAGAAGACATTAGAGGATCGATTTAGCAGTAATTGTAGGATTGCAATTTAGATAAATTAACTCCTGTTTACTTGCCTGAAAAGATGCCCATGTTGAGTTTATTACAGTTGCTAATAGCTAGGCTTTTTGCTGGGGATACATGGGGGTTGGACGGATACTGTGTGGTTTACAATAAGGCACAATGTGTTAAAAAACGTTTGTACCCCACTTACAAATAATGTGCAACACTAGGCTAGACAGTGGGAGCAGCAAGGCATTCGTGTGGTACTAAACTAAATCTCCCTCCCTGCTTGGCAggtagtggtgtaaagtaactaagtaaaaatAAGTGAGTAATTTTTGTTGACTCTTACTATATTCATAAAGATAATGTGCACTTTTTACtcccattttccctgacacccaaaagtacctgTTACACTTCGAATGCTCAGGCAGGATagcaaaatggtccaattcac

Function

NR:

description
nicalin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568923.2 True 3092 mRNA 0.47 16 56192761 56202852

Neighbor

gene id symbol gene type direction distance location
LOC110494146 fam219a coding upstream 365 56170609 ~ 56192396 (+)
LOC110494144 LOC106565388 coding upstream 80676 56108382 ~ 56112085 (+)
LOC110494143 LOC106565389 coding upstream 98204 56088149 ~ 56127481 (+)
LOC110494131 LOC106565386 coding upstream 111704 56056291 ~ 56081057 (+)
LOC110494134 LOC106565385 coding upstream 153440 56030123 ~ 56039321 (+)
LOC110494150 NA coding downstream 121934 56324591 ~ 56329073 (+)
LOC110494151 LOC106565395 coding downstream 165180 56368032 ~ 56374726 (+)
LOC110494152 LOC106565396 coding downstream 244240 56447092 ~ 56452377 (+)
rbck1 ub7i3 coding downstream 258491 56461343 ~ 56473775 (+)
LOC110494158 LOC104945853 coding downstream 350653 56553505 ~ 56556106 (+)
G1466124 NA non-coding upstream 194414 55996648 ~ 55998347 (+)
G1466121 LOC106565491 non-coding upstream 198587 55992417 ~ 55994174 (+)
G1466120 NA non-coding upstream 201534 55988451 ~ 55991227 (+)
G1466116 NA non-coding upstream 210830 55981494 ~ 55981931 (+)
G1466592 NA non-coding downstream 75293 56278145 ~ 56278451 (+)
G1466594 NA non-coding downstream 76604 56279456 ~ 56279858 (+)
G1466625 NA non-coding downstream 119162 56322014 ~ 56322229 (+)
G1466630 NA non-coding downstream 138409 56341261 ~ 56342125 (+)
G1466131 NA other upstream 176148 56015577 ~ 56016613 (+)
LOC110494110 LOC106565356 other upstream 1718289 54471705 ~ 54474472 (+)
LOC110494100 LOC106565348 other upstream 1928145 54256327 ~ 54264616 (+)
G1466224 gem other downstream 16390 56219242 ~ 56220946 (+)
LOC110494160 LOC105017078 other downstream 377539 56575737 ~ 56584088 (+)
G1467020 NA other downstream 914850 57117702 ~ 57118886 (+)
G1467030 NA other downstream 943661 57146488 ~ 57147741 (+)
G1467031 NA other downstream 946451 57149303 ~ 57150343 (+)

Expression


Co-expression Network