LOC110494151 (LOC106565395)


Basic Information

Item Value
gene id LOC110494151
gene name LOC106565395
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 56368032 ~ 56374726 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568929.2
CAGGGGGGCAGTCCCTACAAAGAGGGAATAGGTTAGAGAGAACAGTAGACAAGGaacgagagtagagagagagagacagagagagacaaacagacagacagagacagagacaaagactcAAAGAGAGTCTGCATGCAGCAAGCCTGGGACAGCTTGGTACTGTAGAAACAGCCAGACGTTCAACTCTAGCACTAATTTCCTCTCTGCTCCACAGCAAGCCCACCTGGTTCAGCTCAACACTGCATCATCAGAGCCAGCCCATTCTCTACATATGGAGAGGGAACCGGCTTCTTTTCAGACACTCAGCATCTAGGTCCTGAGGCAAGGGTACTGAAGCAGAGTCCTACAGAATTTCTGGAAGAGGAAACGTTGCAGTAACAACTTAGAGTGTCTGTGTGATTATGGATGACTCCAGCCGTCAGTCTGAGTAGAGCATCATCCTCCATCATGGTACAGCAAAGGGGACACAAATACTTAGCAGTTATGGACAGCGATTTGAGCCAAGAGGTTTTCGTAGGACTGGgagcagatgaaggggaggaggttTTTGGACCGTCACCCTCCAACAAAGACCCCAACTGGTGCAAGACTCCCACGGGTCACATCAAGCGGCCCATGAATGCATTCATGGTCTGGTCGCAAATCGAGAGACGGAAGATCATGGAGCAGTGGCCAGATATGCATAACGCAGAGATCTCCAAACGCCTAGGCAAGCGCTGGAAACTCCTCCCCGACTACGAGAAGATCCCCTTCATCAAAGAAGCAGAGAGACTTCGGCTAAAGCACATGGCTGACTACCCCGACTACAAGTACCGGCCCCGGAAGAAGAGCAAGAGCTCCATGCCCGTGCGGGTCGGGGAAAAGGTCCCCCTGAAGACAGGCAAGTCCCACACGGGTGGTCGTGCATCCGCTTCCGCTTCCGCATCCTCCACAGCCTCCAGCAAAGGGCTCAAGGTCCGAACGccttcctccaaacacagagCCAGCTTCCACGGCAATAAGTTCAAAGGTTACGACGAGGGCATCAGCGATGACGACACAGTGGATGTAGAGATGGCCAGTCAGGGAGCAAGCCAGCCAGGAGGGCAGAGGCCAGCCGTGGACGTCTTCCACCACCAGCAGGCTGCCATGACCACTGGGCAGCAGCAACCTCATCTCACAGCCCAGCTCAGAGTCAAATTGCCCACCACCACCTCCCACCCGCCCACCTCCACCCTCCCTGTGGGCCTCTCCTCTGGGTCTCCTGTAACCCAGAGCCTCCCAGAGTCGTCCCCCAGGGTGTCCTCTTCATCGGAGTCCCGTACGCCCCTCTCCTCCACCGGCCgctcctccacccccacctccaccagcTCCTCCTCATTCGTGTCGTCGGCCTCCTCCGACGAGGAGCTGGATGAGGAAATCTTGCATATCATCTCCAACGCCAACTTCGACAGCATGCCTATGGATTGCGCCACTCTGGACAAAGACTTTGATGCTGCGTTTCACACCAACTCAGGATCCCACTTCGATTTCCCTGACTACTGCACCCCAGAAGTGAATGAGATGATATCCGGGGACTTGCTGGTGCCCAGTATCTCTGACCTGGTGTTCAAGATCTACTGACCTTCATTCATAAAAGCCTGTGGTTTTTTgcttatattatttatttttccccACCCTGAGCTTGGACACTTCCTTTTTGTGTTCTCTCAATCAAGTCCGTAAGTGCTATTGCTTTTCTTTTCCCAGTATGCCACATCCTGATGGTCTGGTGTACaaacagtgaaatgtttctcaCTCCAAGCCTTTTATCAAAGTTTAAATATTCAGGCACCGAACAGGAGACCAGGTACAAACAGCAGAGCAGACTCTGAACAGATATGTTCCTAGTAGAGGGATAAGAGTGCTTTCAACAGTAAACCTATTCAGTATTTATTGTTTTCAGTATTAACAGGAGCATGGAGCATTGCCATGTCTTTCATGTGCATTTGTTGTATATGAAGCACCATTACAGATATGTTCTGACATAATCAACCAATGAAGGCAACAACTGCAGATTCACATTTTCAAATTGACAAAGTAGCCTCATTCCTGATTTATTCATGTTATCAACAAATTATCTCTAAATATCAAAGGGTAAAAAGGGAGATCATGTGAGGCATAGATAGTCCTTATGTTTCAGCTAATAGGAATCTGCAGCACTTGTCATCAGGCTTTTACAGTAGCATCAGTTAAAGTAGAGGCTCTTGCCAAGAGAGAAATCTGCTGCAGACAAGTGCCAAGGAGCCGGCCATAATTTATTTAATAATCTGTAATTAGATAACAGCACTTTCATCGCCTCGCTAATACTGCAGACTCCAAGACATGGAGTATTACGTAAACACAAgccttgtgtgtgtgcctgattcATTCCAGACAGTTGAGGCTGACCGTAGCGGTGGTttggtggttagagtgtggggCTGAGTAGTGGAGGGGgaacaggaagggagagaggggaagtgaaAGAGGGGCCAGGGGGTCGGTGATGGGGGGTGAGGAGAAGCTTTTCTTTCAGGGAGCTGTACATCTGTCCGTGCAGGCAGCAGCCTTTGTGCCGGGGTCGgagtaagtgtgtatgtgtgagtgagtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgagctctATTGAGCAAGCGTCTGCCAGCCGGGGTAGTGGAGAGGGGGGTAGTGTATTCAGGGGTAGATGAGGACACGGCCATCCACACACCCACCAGCTCAGTAAAATGCATGTCATGTCTGCAGTCTGGCTGCAGCTGCCTGATCAGGGCCGATTCAGCGGTGAATGGAGGAGAATCTGTCTGCCAGCTGTCCCTCCATTGACTCTCTCAGGGATTGTTTTGTCTAGAGGTCCTTCTGCCCCTGCCTCATTCATCTGCCCTGATCTGGGGATGAGATGCacgccacctctcctctcctcttctatctctctttcaAACAACCGTCGGGGGAacgaggtgacagagagagagagagagtgagacggacccccccttctctctccatcccaacATGTGACCTTTCTTCTTTTTATCCCTCTATCCTCATTAATTACATCGCCTGGCTTTGGCACTGTGGTGAAAAGGACCAGTGTTATTTGCTTACTCTCCACCAGCAGCTGCCGAAGAGCCAGCCAGAAAGCAGCACCAAAACCCTTCCTGCAGTTCTTATCTTATATAAACTGATGCTAATCCCTCGCCAGACCGACCTTGTCAGAGCCAGTCAGCATCCTTTAACAGAGGCTGCCCCACGCGTTGCAGTGTGTCTCTGGAGCAGGCCAACGAGAGGCAGGAGACAGGGGATATGTGATGGGACCATGGGGGATACATTGGGAGTTTGTTTTCAGACCAAGATGCACTGTTTAGGGTTGTGTCTTAATGACTGTGTGGTATAGGGATCATGACGAGAACAGGATTGGGTTTTGTGTTGTGTTCCTCCTCAGTCCCTCCCCCCAGGAAACGCCTGAAGGAACCAATGCTTGTTTATGAGCGACAGTGTTTTCAGTTCCTTGTGATGAGAGAACTGCACCATAACCTTTACAGTACAATGTCTTCATTAgcaaaaaaacgaacaaaaataAAATCAGGTAACTTGTTTCTGAACTGGAAGGTGGCTTCCTTCGTAGATATCAATGGTAGGAGAAGATAGATgaaggttaaaaaataaataaataaataaataaaaataaaaaaagagagatgGTTCTACTACGAACAGAGGCCTTTAAGAATCCATACAACAACACTGATTAATTTTTTCTGTTACATATAAGTAGGAGTTCCTTTAAAAATATTGGAAGGATACCATTTGAACGGTAAAGAATCCAGAAACAACAACATCCAACCTCCATCTAAAAGTGAACTGCAATCGAGGTTTTAGACATACTGCATGTGTCCTAGTATTAAAAAAGTGATCGCCAGTATTCTGTACTGTTAATACACACTGATATTGGTTTACATAGACAAAGTACGGCAAGCCATTCCTGAACAAATCAGTATTCAGGGATGAAACAGGTGAAATTACAAATACAGATTCAGCAAAAATGTCTTGGTTCACCAGTTGAAAGGGTATTTCACCTCTTGATTATGTACAtgatacagtacaatatatcccATGTTCTGTCTGGTTATAATAGTATTACTCAACAAACCTACAGTACCGTACAGTGTAATGGAACCAATACTGAATTCAACACCAGCAGCCTAAAACTGGACTCAGGACTAAGGTAACAGCTCACTGTGGAACTGATCCTATGAGTTTTAGTTTTAGTCATTCTATTGTGCTGTATATTAGATCATGCATCTGAAAAAAATATGTACCAGCAAAATTATTTGATACTGCTGAGTTATACCTTTTCAAAGATGTAATGTTTGAACGTACAGTGTGTATCAATCATTCAGGTGCATTTAAGtgtaaataaaatatttatttaattacataaaaatgtttttaaaaaagcaAAAGGTTGGAAAGGGACACCCTTGACAGAAACCTAACCAGCATTTCCGATTATTTATTTAATACTTGTGTTTTTTATTAGAATACTTCTAGGCtcattttattttactttttcaTATTTTAGAAAGAGAGCTAGAAACCGGCCTAGACAACTCACAGATGGGCTCCGGCAAATTAGTGTCAGAGTGATAAATGCAAAAAGCTGTGGAGAAATTAAGCTGGGTAAAAACACCCATCTGGTGTGCACCTCCTACTCTGGGCCGGCCTTTGATGAATAGCATTCCCTGAGACAGAAATACAAGGACAATGCAAATTTCATCGAGCCGTCGGCCTCCCTCTCCTAccacctcaccccacccccacccaccccTTCCCCCTCACATCACAAGTGGGGCATAGCAGCCCCCGCCATACTGAGcatgactgtctgactgtctgtctccagcTACAGCGTCTTGCATGTGGCTGCCACCACGGTGACCTGGGGCCCCCAGCAGGACCAGTCCAGGGCTATAGGGGTCCACAGGGGCCACTCTCAACCTCAGGGTCCTAGTAGGACTTAACTTACCATTCCTTTAAACCACACCGAcctgacaacacaacagcagCACTGGGAGACCCGGCTTGCTGCACACAGAAGTAGCCAAAATATGACCATGATGCCTCACATACAAGTACATATTGTTTACAAGGttttacagtattatagtctgagCTGAATACAGAATGTTTCCTCCGCTTTCATCCTCGCAGCAAGggttattttgatttgtttacaatGTCAAATATGATTTGTAGTCTATTCACCAGCACGTTTTGGTCTTAGTCGTGGCAAATTGTAACAAAACCTATTTCTGCGACATGAAACAAGCTGAATCTTGTTAAGCTGAAAATATGCTTGTGTTGAACTTTGATTCCTCAACGTTATTGTAAAACAGGGGAAATGGGGatgtttaaatatattttcatgtgTTACAAATGCATTGCATCCAGCAGTACACTCCAGAGTGTACTAGTCTGAACAAACTGTCTAATCAAATCTATAAGGCTCACCCCTATTAATccatatatagatatatattggcatacattttaagatCTGTGTTGATAAATGTAATTGGTCGATAAGTAGAACCAAAATTCTTGACATTGCATTGATAATAGGTATGCATGTACAAATAGTAAATGTCTCTAACAATGGGAGTAATTGCACTTCGTATAGCCTCCCATGAAACACTTGTATTGAAAACCAGGGGAAAATGGTGGAAAAAGTCATTTAGAAAAATGCATCACTATGCTAACAAAACTTAATGCTAATATTGTCGTATTGGAACCCCCCTCTGCTGTGTAGACTGTCATTCCTGCACTATTCATTATGGATTGGTGCATAACAAACATGATGTGTTTCTATCAATCAGTCATTTGCTGTATTGCAATTCCATAAAGCTCATTTAATCTGTGTGCAAAATGGTTCAACAGCTAACCATCCCGTTCATCTTGGTATCGCGTTTGACCAATAATTAGCATTGCTTTATCATGTATATGTATGCTTTTTGTAGTGTGGTACATTCAGCTGTTCTGACAGCGTGTGTGTGGATAGAAATCAAAGCACTTTGTTGTAAATATGTACGTAGATCTGAGAGACGCCATTTTTCATTTTGGATAGAGTTATCAGTGTAATGACACTCCATCACTGAATAAACTGTTACAGTCAA
>TU1677476
cctccaccagcTCCTCCTCATTCGTGTCGTCGGCCTCCTCCGACGAGGAGCTGGATGAGGAAATCTTGCATATCATCTCCAACGCCAACTTCGACAGCATGCCTATGGATTGCGCCACTCTGGACAAAGACTTTGATGCTGCGTTTCACACCAACTCAGGATCCCACTTCGATTTCCCTGACTACTGCACCCCAGAAGTGAATGAGATGATATCCGGGGACTTGCTGGTGCCCAGTATCTCTGACCTGGTGTTCAAGATCTACTGACCTTCATTCATAAAAGCCTGTGGTTTTTTgcttatattatttatttttccccACCCTGAGCTTGGACACTTCCTTTTTGTGTTCTCTCAATCAAGTCCcTACAGCGTCTTGCATGTGGCTGCCACCACGGTGACCTGGGGCCCCCAGCAGGACCAGTCCAGGGCTATAGGGGTCCACAGGGGCCACTCTCAACCTCAGGGTCCTAGTAGGACTTAACTTACCATTCCTTTAAACCACACCGAcctgacaacacaacagcagCACTGGGAGACCCGGCTTGCTGCACACAGAAGTAGCCAAAATATGACCATGATGCCTCACATACAAGTACATATTGTTTACAAGGttttacagtattatagtctgagCTGAATACAGAATGTTTCCTCCGCTTTCATCCTCGCAGCAAGggttattttgatttgtttacaatGTCAAATATGATTTGTAGTCTATTCACCAGCACGTTTTGGTCTTAGTCGTGGCAAATTGTAACAAAACCTATTTCTGCGACATGAAACAAGCTGAATCTTGTTAAGCTGAAAATATGCTTGTGTTGAACTTTGATTCCTCAACGTTATTGTAAAACAGGGGAAATGGGGatgtttaaatatattttcatgtgTTACAAATGCATTGCATCCAGCAGTACACTCCAGAGTGTACTAGTCTGAACAAACTGTCTAATCAAATCTATAAGGCTCACCCCTATTAATccatatatagatatatattggcatacattttaagatCTGTGTTGATAAATGTAATTGGTCGATAAGTAGAACCAAAATTCTTGACATTGCATTGATAATAGGTATGCATGTACAAATAGTAAATGTCTCTAACAATGGGAGTAATTGCACTTCGTATAGCCTCCCATGAAACACTTGTATTGAAAACCAGGGGAAAATGGTGGAAAAAGTCATTTAGAAAAATGCATCACTATGCTAACAAAACTTAATGCTAATATTGTCGTATTGGAACCCCCCTCTGCTGTGTAGACTGTCATTCCTGCACTATTCATTATGGATTGGTGCATAACAAACATGATGTGTTTCTATCAATCAGTCATTTGCTGTATTGCAATTCCATAAAGCTCATTTAATCTGTGTGCAAAATGGTTCAACAGCTAACCATCCCGTTCATCTTGGTATCGCGTTTGACCAATAATTAGCATTGCTTTATCATGTATATGTATGCTTTTTGTAGTGTGGTACATTCAGCTGTTCTGACAGCGTGTGTGTGGATAGAAATCAAAGCACTTTGTTGTAAATATGTACGTAGATCTGAGAGACGCCATTTTTCATTTTGGATAGAGTTATCAGTGTAATGACACTCCATCACTGAATAAACTGTTACAGTCAAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568929.2 False 6210 mRNA 0.45 2 56368032 56374725
TU1677476 True 1635 lncRNA 0.41 2 56369855 56374726

Neighbor

gene id symbol gene type direction distance location
LOC110494150 NA coding upstream 38990 56324591 ~ 56329073 (+)
zgc:109965 LOC106565507 coding upstream 165180 56192761 ~ 56202852 (+)
LOC110494146 fam219a coding upstream 175636 56170609 ~ 56192396 (+)
LOC110494144 LOC106565388 coding upstream 255947 56108382 ~ 56112085 (+)
LOC110494143 LOC106565389 coding upstream 273475 56088149 ~ 56127481 (+)
LOC110494152 LOC106565396 coding downstream 72367 56447092 ~ 56452377 (+)
rbck1 ub7i3 coding downstream 86618 56461343 ~ 56473775 (+)
LOC110494158 LOC104945853 coding downstream 178780 56553505 ~ 56556106 (+)
LOC110494160 LOC105017078 coding downstream 201012 56575737 ~ 56584088 (+)
LOC110494159 nrn1 coding downstream 210134 56584859 ~ 56591591 (+)
G1466632 NA non-coding upstream 24809 56343020 ~ 56343223 (+)
G1466631 NA non-coding upstream 25490 56342327 ~ 56342542 (+)
G1466630 NA non-coding upstream 25907 56341261 ~ 56342125 (+)
G1466625 NA non-coding upstream 45803 56322014 ~ 56322229 (+)
G1466702 tbc1d20 non-coding downstream 106262 56480987 ~ 56483412 (+)
G1466708 NA non-coding downstream 120129 56494854 ~ 56506137 (+)
G1466707 NA non-coding downstream 158943 56533668 ~ 56536745 (+)
G1466742 NA non-coding downstream 184788 56559513 ~ 56559838 (+)
G1466775 NA non-coding downstream 269789 56644514 ~ 56644724 (+)
G1466224 gem other upstream 147086 56219242 ~ 56220946 (+)
G1466131 NA other upstream 351419 56015577 ~ 56016613 (+)
G1466124 NA other upstream 369858 55996648 ~ 55998347 (+)
LOC110494110 LOC106565356 other upstream 1893560 54471705 ~ 54474472 (+)
G1467020 NA other downstream 742977 57117702 ~ 57118886 (+)
G1467030 NA other downstream 771788 57146488 ~ 57147741 (+)
G1467031 NA other downstream 774578 57149303 ~ 57150343 (+)
G1467159 LOC106565433 other downstream 1104072 57478797 ~ 57554480 (+)

Expression


Co-expression Network