LOC110494152 (LOC106565396)


Basic Information

Item Value
gene id LOC110494152
gene name LOC106565396
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 56447092 ~ 56452377 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568930.2
CAGACCAGGGGGGTGGAGCTACGATGTTGCAATCATGCTCAGTCGCGCATCACCAACTTCACTGCTGTAACAGAAAGGATAGTTGAAGCCAATGTGCTGTCCAGTCCATTCTCAATCAGTCGGTGGGGGCACGTCTGATTAGAAATCTACTTTTTAGGGACTCCATTTGGAAATTAAAGGTTTACTATGCAATTGACCAAATAGGGGACGTGTAGCTTACTCTTTCTTCCCTATGACCAATTATTTATCTGGACGCGTCCACGAGTTTCCATAACTACTTCGGACAAGTAGGCGCTCTTTCTTCATTATTGTGCAAGAGTCTTTAAACGTGTATTTTCACTATTTATAGAAGGTTTTGCTGGTTTTCTACTAAAAGTCGCTGGCTTTTTCGCAAGGAAAACACTGGATACACAAGTCGCTACACACCGGGAATGGAACAAAGGCATCTGTACCAACAACAGTAGAGACACCAGTGTTGCCGCCTCTCTTCAAAGCAAAATAACCTATTCAATTTGTCAAGGACTTTAATACATATTTTGCTTTGGATATGTGAACAGACATCCCGCACAACAAACGACGAAAGCTAATTTGAACTCGTATGTTATGGTTACATATTTTGCACATGCAACTGTAAATACGTTAGACTCCCTTTAACCACTTTCTTCTAGAAGGAAGAAAAACATTTTGTCTGAAGCGATCAAAATTATTTGGTTTCCTCTACACAGCAAGGGTTTTGCTACGTTTTCTGCACATTTCGAGTTTCTTGACAAGCAAAGCACTACACCAAAAGCTGGAGTTACCATACCATTGTTCTGTTCTGGAGAGCTGACCCCTTTGTCTTCCACTGCCAAGATGAGTGTGAACATCTCTCCCGCCCCTGCGCCTACTCGTCCCCTGCGGCTGAAGCGGCTGGAGCTGGATGACCCCCAGGACTACACAGAGGCCCTGAAATGCAAGCGTCCTCGACTGAGCCTGCCACCCTCATCCCCCGGCCTGGCCCCATGCCTGAGGCCCCTGAGACACAGTCCGGGTCCTGTGGGCTCCGACCACCACTGTGTGTCCTGCATCGGGCCCTACGTCCTCCTTGAACCCACAGAGGGAACAGAGACTTACAGGGCCGTCCATAGGGTCACAGAGCAGGAGTACACCTGCAAGGTGTTTTCTATGAGGCGGTACCAGGAGCTCATCGCCCCCTACGCCCGCCTACTGCCCCACGACAACATCTGCCGCATCGCAGAGGTGGTGATGGGCGAGCGCAGCGTCTACGTCTTCTTTCAGCATAACTACGGTGACATGCACTCTTACGTGCGCACGTGCAAGCGGCTCCAGGAGGAGGAGGCGGTCCGTCTCTTCGGCCAGATGGCAGCGGCGGTGGCCCACTGTCACGAGCACGGCGTTGTCCTGCGTGACCTCAAGCTGCGCAAGTTTGTCTTCGTGGACCAGCAGAGGACCAAGCTTGTTCTTCAGAACCTGGAAGACTCATGTCTGCTCCATGGGGACGACGACTCTCTGACGGACAAGCACGGCTGCCCGGCCTACGTGGGCCCCGAGATCCTCAACTCGCGCCACTCCTACTCAGGGAAGGCTGCCGACGTGTGGAGCCTGGGTGTGGTGCTGTACACCATGGTGGTGGGACGTTACCCTTTCCAAGACGTGGAGCCTGCTGCGCTCTTCAGTAAGATCCGCCGGGGGGCATTCACAGTGCCAGAGTCACTCTCAGTGCAGGCCAAGTCGCTGGTGTGCTGCATGCTGCGAAAAGTTCCCTCAGAGAGACTGGAGGCCTCGGAGCTGTTGTTCCACCCGTGGCTGAACTGTTCCAACAACACAACACCTCCCAACACGCACCTCAACCCCAGAAACTGCACTGACCAAGTGGTCCCCAGCTACACCGACGACACGTGTTTCTAgaataaaaatgttaaatatcCTCTGTCCTTCATCGTCCACTTTGTCCTACTGATGCAAGTACAGCGGCATAATCTCCATATAGGAAATACTGGTAATGCAGTTTCTTTTCTCCCTACCTGAAATTTTTGGTGACATTTAAGAAACACAAGGCATTGCAAATGTCTACAACTGCAGTGTTGTTAACCTGCTGTTAGACATTAGCATGTATATATGCTGAAGTTGTGCTTTTGAAGAAGTTATGAACCTGTTATGCATGGCCGTCAATCTGAAGTGTTACCAAATGTATAACATAGTTCTGTGTCAAAGCATCTGTTGGCATTGCAGACAACAAAGCAGTAACTACCAAATACTGTATCTCCTGGCCACGTGTACACCTACCTCCGTCGAGGTAGTTGTACACTTGCTGGTCTAGGGTCCAATGCAGTTAGTCCCACACTGCTGTGAAACATCAAGAGAGGTGCTTTTCAAAAGCTACCCAACTATTGTGCTTTAACCAATGAAAATGTTTTGTTGACTCAATGGGAAGAACAGGTGAAAAATCTTCAGATAACATGCCCTATAGAAGCAGTCTGTCGAGCTGTATTCCCCTTCACAAAAAGCAGTAATTTTACTATTCTTTTGTCGAGCAACTCCGTTGGGAACACTAAATCGAAGATCTATATCTGACCGGGTTGATACCTGATACCTCCGAACTTGACGAAATCCTGGAATACTTGATGCACGTTTTGTGCCTTtttatgtaggcctactgtttaTATATTTCAGTGACCGATGGATCCTACCAACCGTTGAAGTGCCTTGTTTTCATAACCACAGTTTATGTTTAGTCCCCCTCCCTATATCCCTATCAGAAGTTGAGTTTTGCTTTACCAAAGACTAATGCtgcattcataaccaagtgggaaggtggtatttACCACATACGACTGGGAAAGTCCACTTGAACgcccctccaactggtaattactagtgggaaactcgtCTATCATCCCTGACTTCTCTTACATGCTGATCTGAGGTCACCTACTAAGGAAATTTCAgcagttaaatgcaacaaaacatttataaaaagcaATCTATTAATATGGTTTTTGAACACTTTGTTCACAAGCATGATAGCTGTGCTTTTAGTTGTTGACAGCTTGTTGGCCATTACCCAACTCGGCATTCTCAACAAGTTTAAAGCATcaatgcatccaactggtatttacgacttgacaactggtaattaccaccttcccacttggttatgaacgcaGCACTAGGCTACCCTCAATCATCACTTGTGGTGTGCTGATAGTTTGTCATCTGTGATTCAGTGACCGTTCGCCTCGGTCACAGGGTTTGTATGTTTTCTGACAAACGTATGATGTCAGAGTTAGCATGGTGTCCTAGATTCCTAGACAAGTGTAGTCATTACCTCAGGCGTGAGTTAATGTCTGTAGAAGTATATAGTGCAGTGGGTTAGATCCTGAAGAATACAGTGCTGTAGTGTACTTTAAACATCTTGAAAACCCATGTAATGGTGAAACCGTGTTAGTATCTGTTGACCTGAAGAAACAAAGGTATCACATTCTTTACACAGTACTGTGTGTTAGTCGTGATGCCTGCATGCAGTTCGCTGACCCTAAATAGATCTAAGATCCTACACTAAGCCACAGCTCTTATTGTGACTTTGTAAATACTTTTTTGTAAGAAAAGTACACACTTTTTCTGATGTTTGTTTGGTGGATGTACTTTAGTGAACAAGTATTTGTTGCCAGTAAAAAATAAATCCTTGAACTGAC
>XM_036950229.1
CAGACCAGGGGGGTGGAGCTACGATGTTGCAATCATGCTCAGTCGCGCATCACCAACTTCACTGCTGTAACAGAAAGGATAGTTGAAGCCAATGTGCTGTCCAGTCCATTCTCAATCAGTCGGTGGGGGCACGTCTGATTAGAAATCTACTTTTTAGGGACTCCATTTGGAAATTAAAGGTTTACTATGCAATTGACCAAATAGGGGACGTGTAGCTTACTCTTTCTTCCCTATGACCAATTATTTATCTGGACGCGTCCACGAGTTTCCATAACTACTTCGGACAAGTAGGCGCTCTTTCTTCATTATTGTGCAAGAGTCTTTAAACGTGTATTTTCACTATTTATAGAAGGTTTTGCTGGTTTTCTACTAAAAGTCGCTGGCTTTTTCGCAAGGAAAACACTGGATACACAAGTCGCTACACACCGGGAATGGAACAAAGGCATCTGTACCAACAACAGTAGAGACACCAGTGTTGCCGCCTCTCTTCAAAGCAAAATAACCTATTCAATTTGTCAAGGACTTTAATACATATTTTGCTTTGGATATGTGAACAGACATCCCGCACAACAAACGACGAAAGCTAATTTGAACTCGTATGTTATGGTTACATATTTTGCACATGCAACTGTAAATACGTTAGACTCCCTTTAACCACTTTCTTCTAGAAGGAAGAAAAACATTTTGTCTGAAGCGATCAAAATTATTTGGTTTCCTCTACACAGCAAGGGTTTTGCTACGTTTTCTGCACATTTCGAGTTTCTTGACAAGCAAAGCACTACACCAAAAGCTGGAGTTACCATACCATTGTTCTGTTCTGGAGAGCTGACCCCTTTGTCTTCCAAGATGAGTGTGAACATCTCTCCCGCCCCTGCGCCTACTCGTCCCCTGCGGCTGAAGCGGCTGGAGCTGGATGACCCCCAGGACTACACAGAGGCCCTGAAATGCAAGCGTCCTCGACTGAGCCTGCCACCCTCATCCCCCGGCCTGGCCCCATGCCTGAGGCCCCTGAGACACAGTCCGGGTCCTGTGGGCTCCGACCACCACTGTGTGTCCTGCATCGGGCCCTACGTCCTCCTTGAACCCACAGAGGGAACAGAGACTTACAGGGCCGTCCATAGGGTCACAGAGCAGGAGTACACCTGCAAGGTGTTTTCTATGAGGCGGTACCAGGAGCTCATCGCCCCCTACGCCCGCCTACTGCCCCACGACAACATCTGCCGCATCGCAGAGGTGGTGATGGGCGAGCGCAGCGTCTACGTCTTCTTTCAGCATAACTACGGTGACATGCACTCTTACGTGCGCACGTGCAAGCGGCTCCAGGAGGAGGAGGCGGTCCGTCTCTTCGGCCAGATGGCAGCGGCGGTGGCCCACTGTCACGAGCACGGCGTTGTCCTGCGTGACCTCAAGCTGCGCAAGTTTGTCTTCGTGGACCAGCAGAGGACCAAGCTTGTTCTTCAGAACCTGGAAGACTCATGTCTGCTCCATGGGGACGACGACTCTCTGACGGACAAGCACGGCTGCCCGGCCTACGTGGGCCCCGAGATCCTCAACTCGCGCCACTCCTACTCAGGGAAGGCTGCCGACGTGTGGAGCCTGGGTGTGGTGCTGTACACCATGGTGGTGGGACGTTACCCTTTCCAAGACGTGGAGCCTGCTGCGCTCTTCAGTAAGATCCGCCGGGGGGCATTCACAGTGCCAGAGTCACTCTCAGTGCAGGCCAAGTCGCTGGTGTGCTGCATGCTGCGAAAAGTTCCCTCAGAGAGACTGGAGGCCTCGGAGCTGTTGTTCCACCCGTGGCTGAACTGTTCCAACAACACAACACCTCCCAACACGCACCTCAACCCCAGAAACTGCACTGACCAAGTGGTCCCCAGCTACACCGACGACACGTGTTTCTAgaataaaaatgttaaatatcCTCTGTCCTTCATCGTCCACTTTGTCCTACTGATGCAAGTACAGCGGCATAATCTCCATATAGGAAATACTGGTAATGCAGTTTCTTTTCTCCCTACCTGAAATTTTTGGTGACATTTAAGAAACACAAGGCATTGCAAATGTCTACAACTGCAGTGTTGTTAACCTGCTGTTAGACATTAGCATGTATATATGCTGAAGTTGTGCTTTTGAAGAAGTTATGAACCTGTTATGCATGGCCGTCAATCTGAAGTGTTACCAAATGTATAACATAGTTCTGTGTCAAAGCATCTGTTGGCATTGCAGACAACAAAGCAGTAACTACCAAATACTGTATCTCCTGGCCACGTGTACACCTACCTCCGTCGAGGTAGTTGTACACTTGCTGGTCTAGGGTCCAATGCAGTTAGTCCCACACTGCTGTGAAACATCAAGAGAGGTGCTTTTCAAAAGCTACCCAACTATTGTGCTTTAACCAATGAAAATGTTTTGTTGACTCAATGGGAAGAACAGGTGAAAAATCTTCAGATAACATGCCCTATAGAAGCAGTCTGTCGAGCTGTATTCCCCTTCACAAAAAGCAGTAATTTTACTATTCTTTTGTCGAGCAACTCCGTTGGGAACACTAAATCGAAGATCTATATCTGACCGGGTTGATACCTGATACCTCCGAACTTGACGAAATCCTGGAATACTTGATGCACGTTTTGTGCCTTtttatgtaggcctactgtttaTATATTTCAGTGACCGATGGATCCTACCAACCGTTGAAGTGCCTTGTTTTCATAACCACAGTTTATGTTTAGTCCCCCTCCCTATATCCCTATCAGAAGTTGAGTTTTGCTTTACCAAAGACTAATGCtgcattcataaccaagtgggaaggtggtatttACCACATACGACTGGGAAAGTCCACTTGAACgcccctccaactggtaattactagtgggaaactcgtCTATCATCCCTGACTTCTCTTACATGCTGATCTGAGGTCACCTACTAAGGAAATTTCAgcagttaaatgcaacaaaacatttataaaaagcaATCTATTAATATGGTTTTTGAACACTTTGTTCACAAGCATGATAGCTGTGCTTTTAGTTGTTGACAGCTTGTTGGCCATTACCCAACTCGGCATTCTCAACAAGTTTAAAGCATcaatgcatccaactggtatttacgacttgacaactggtaattaccaccttcccacttggttatgaacgcaGCACTAGGCTACCCTCAATCATCACTTGTGGTGTGCTGATAGTTTGTCATCTGTGATTCAGTGACCGTTCGCCTCGGTCACAGGGTTTGTATGTTTTCTGACAAACGTATGATGTCAGAGTTAGCATGGTGTCCTAGATTCCTAGACAAGTGTAGTCATTACCTCAGGCGTGAGTTAATGTCTGTAGAAGTATATAGTGCAGTGGGTTAGATCCTGAAGAATACAGTGCTGTAGTGTACTTTAAACATCTTGAAAACCCATGTAATGGTGAAACCGTGTTAGTATCTGTTGACCTGAAGAAACAAAGGTATCACATTCTTTACACAGTACTGTGTGTTAGTCGTGATGCCTGCATGCAGTTCGCTGACCCTAAATAGATCTAAGATCCTACACTAAGCCACAGCTCTTATTGTGACTTTGTAAATACTTTTTTGTAAGAAAAGTACACACTTTTTCTGATGTTTGTTTGGTGGATGTACTTTAGTGAACAAGTATTTGTTGCCAGTAAAAAATAAATCCTTGAACTGAC

Function

NR:

description
tribbles homolog 2-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0003714 transcription corepressor activity molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K08814 TRIB1_2; tribbles homolog 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568930.2 False 3695 mRNA 0.46 4 56447092 56452377
XM_036950229.1 True 3689 mRNA 0.46 4 56447092 56452377

Neighbor

gene id symbol gene type direction distance location
LOC110494151 LOC106565395 coding upstream 72367 56368032 ~ 56374726 (+)
LOC110494150 NA coding upstream 118050 56324591 ~ 56329073 (+)
zgc:109965 LOC106565507 coding upstream 244240 56192761 ~ 56202852 (+)
LOC110494146 fam219a coding upstream 254696 56170609 ~ 56192396 (+)
LOC110494144 LOC106565388 coding upstream 335007 56108382 ~ 56112085 (+)
rbck1 ub7i3 coding downstream 8966 56461343 ~ 56473775 (+)
LOC110494158 LOC104945853 coding downstream 101128 56553505 ~ 56556106 (+)
LOC110494160 LOC105017078 coding downstream 123360 56575737 ~ 56584088 (+)
LOC110494159 nrn1 coding downstream 132482 56584859 ~ 56591591 (+)
LOC110494162 LOC106565402 coding downstream 146028 56598405 ~ 56617378 (+)
G1466632 NA non-coding upstream 103869 56343020 ~ 56343223 (+)
G1466631 NA non-coding upstream 104550 56342327 ~ 56342542 (+)
G1466630 NA non-coding upstream 104967 56341261 ~ 56342125 (+)
G1466702 tbc1d20 non-coding downstream 28610 56480987 ~ 56483412 (+)
G1466708 NA non-coding downstream 42477 56494854 ~ 56506137 (+)
G1466707 NA non-coding downstream 81291 56533668 ~ 56536745 (+)
G1466742 NA non-coding downstream 107136 56559513 ~ 56559838 (+)
G1466775 NA non-coding downstream 192137 56644514 ~ 56644724 (+)
G1466224 gem other upstream 226146 56219242 ~ 56220946 (+)
LOC110494143 LOC106565389 other upstream 319611 56088149 ~ 56127481 (+)
G1466131 NA other upstream 430479 56015577 ~ 56016613 (+)
G1466124 NA other upstream 448918 55996648 ~ 55998347 (+)
LOC110494110 LOC106565356 other upstream 1972620 54471705 ~ 54474472 (+)
G1467020 NA other downstream 665325 57117702 ~ 57118886 (+)
G1467030 NA other downstream 694136 57146488 ~ 57147741 (+)
G1467031 NA other downstream 696926 57149303 ~ 57150343 (+)
G1467159 LOC106565433 other downstream 1026420 57478797 ~ 57554480 (+)

Expression


Co-expression Network