LOC110494158 (LOC104945853)


Basic Information

Item Value
gene id LOC110494158
gene name LOC104945853
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 56553505 ~ 56556106 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950240.1
TATTGCCTCCATAATgccacagtcgactgcagttactgcacttttactgcagtttcaaaactgcaatctttttttgtaaaGGGAATTGTAAAGATATAGAATTACTgaaacattattttttattttttatgcaaAGTCAATTGTTTGGGCATCTTTTATTTCGAAAAACATGTTCAATATTATAATACCTTTAGAGGCATTAGCTCATTAGCTCAGTTCTTTTTCCAGTACAATATAAACTAATTTGAGGCATACAGTAACAAACAGTCGggaagtttaaaaaaaacatgaacttCTGAAACCATTTCCCTTACTTATTCAAAATAGACCCTGCATGGCTACTAacctaaaaaatgtattttatctgAATCCCTAATCATTTCATTAGTACACATTGTTCTGTGAAACTGTAGAACGTGCTGGATTGTAAAAATGTTACTGTGGGTAATTTGAGGGACCAAAGTACAACCCTGTCTTCAGCGGTAGAGATGTGGAGTCCTGTGTAGCTAGCTGTACAGTGTGCGTTTCTGCTCTCTGCCAAATGCCAATCTTTATCTGGCAGCAGAGCTATAAAGCGTGCGGCTGCAGGAGTAATTGGCCTATGTGAGGTGTCCATTCCACCATGAATAACTCCACTAGCCTCAGGGTGCGGTTGCCAGTGCTGGTACTGTTGATGGAAGTGGTTTTCCTTGGTCTCTTTGCCGGCTTTGTCACCTACGACGACAATGCCAACGCCAAGTTTCAGAACAATGAGACCAACCCTATGGACAACTCCCTGTATCGGGACTATCCCTTCTTCGCGGATGTGCAGGTGATGATCTTCGTTGGCTTCGGCTGCCTGCTGGCCTTTCTGCGGCTCTATGGCTTCAGCGGGATGGTCTTCAACTTCTTAACAGCCACCTTTACCATCCAGTGGGCCATCTTGATGCAGGGCTACTTCCAGTTCTACTCTGATGGAAAGATCCACCTTGGGGTCATCAACCTGCTCAATGCTGAGTTTGCCTGTGCCGTGGTGCTCATCTCCTTTGGGGCGGTGCTGGGAAAGACCAGTCCGGTGCAGCTGCTGGTTATGGCCCTGCTAGAGGTCCCTATCTTTGCCGTGACAGAGTGGGCTGTGCTGAAGTACCTAAAGATCAATGACGCAGGTGGCTCCATCCTCATCCACCTGTTTGCCTGTTACTTTGGGTTGGGGGTCACGTTTGTGCTGTATCGGCCTAGCCTGAATGACGGCCACGTCAAGGAGGTTACCAGTTACCAGTCAGACATCCTGTCGTTGATGGGCACCCTGTTTCTCTGGGTGTTCTGGCCCTCTTTCAACTCTGCTCTGACCTTAAAGGGTGATGACCAGCACAGGGCCGTCCTGCACACCTTCATAGGCCTCAGCTCCTCAACGATGACCGCTTTCGCCTTATCTGCCGTATTCAACAAGAGAGGCAAGCTCACCATGGCCGACATTCAAAATGTGACTCTGGCGGGTGGTGTGACTGTTGGGGCCTCTGTGGACATGATGATCTCCCCTGCAGCCGCCTACGCCCTTGGGATCATGGGCTGTACCGCCTGCTTCATGGGATACAGGTACCTCACCCCGTTCTTGGCCCGCCACTTCAGGATCCAAGACCAGTGTGGCATCCACAATCTCCACGGCCTCACCGGCCTCATATCCTGCACGGCTGGCATTTGTGCCATCCTCATGGCCAACGAAGAAACCTATGGCCCCAGCATGTACCAGATCTTCTCCCACCGTGCACCCATGGAGGGAGACCCAAAGCTCCTAGAGCTACAGCAGCTGATCCCAGGGCTGAGGCCCGGGCTGGGGCGCACCGCCAAGGAGCAAGCCGTCTACCAGGTGGCAGCTATCTTCTCTACCATCGGGGCAGCCGCTGTCGGTGGGGTGCTGACCGGCTTTGCACTGAAATTGCCCTGTCTCGCTACGCCGTCTGACGAGTTCTGCTTTGACGACGAGCTGTTCTTCGACGTGCCCTCTGATTTTGCCAGCATGGGGGTGCACAAGGCCCCCCCCAGCATAAAGGACATTTAGGACAATACCAAGGTCTGAActcacatttcaggcttccagCCCTGTATGGGGACACTGGGTTAGCAATACTGAGGAATGAATGTGAAGGTGTGACGCTGCAAAATGTTGCACAAATGTTCCACTCTCTCTTATATGACATGAGAAGATGGGATTGACATCTTATACATTCTTGCCAGCTTTCAAGTTCTTTGGCATTTTGATCAATTAAAAAATGTGTTTGTTGTGTACAGAAGGAATAGCTGCTGTTCATTTTGGCCTGTTATTGCCATTGACAATTGTTATACAATTATTTGTTTTGTTAATTTTGCAAGATGACAATTTCAGATATGCACTTTTTTACAGAGTGAATGTAAGAGTGAGAAATAAAGTGTTATACTCAAAGATGCTGTCAGAGGAATTTACATAACTATTTTAAAAAGATGAATGCAATAATGGATGATTTAGAAATATTGATAATGGGCTGAATTTGTACAAAAATGATCAAAGTTTTGACAATACAATTGATGCTTTTTTTTCAGTATGTTTATTGATGTTTTCAAATCATATTTTTGACTTTATTGGAAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0072488 ammonium transmembrane transport biological_process
GO:0015695 organic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950240.1 True 2602 mRNA 0.47 1 56553505 56556106

Neighbor

gene id symbol gene type direction distance location
rbck1 ub7i3 coding upstream 79730 56461343 ~ 56473775 (+)
LOC110494152 LOC106565396 coding upstream 101128 56447092 ~ 56452377 (+)
LOC110494151 LOC106565395 coding upstream 178780 56368032 ~ 56374726 (+)
LOC110494150 NA coding upstream 224463 56324591 ~ 56329073 (+)
zgc:109965 LOC106565507 coding upstream 350653 56192761 ~ 56202852 (+)
LOC110494160 LOC105017078 coding downstream 19631 56575737 ~ 56584088 (+)
LOC110494159 nrn1 coding downstream 28753 56584859 ~ 56591591 (+)
LOC110494162 LOC106565402 coding downstream 42299 56598405 ~ 56617378 (+)
LOC110494163 inpp coding downstream 66434 56622540 ~ 56629007 (+)
LOC110494166 nab2 coding downstream 93982 56650088 ~ 56667854 (+)
G1466707 NA non-coding upstream 16760 56533668 ~ 56536745 (+)
G1466708 NA non-coding upstream 47368 56494854 ~ 56506137 (+)
G1466702 tbc1d20 non-coding upstream 70093 56480987 ~ 56483412 (+)
G1466632 NA non-coding upstream 210282 56343020 ~ 56343223 (+)
G1466742 NA non-coding downstream 3407 56559513 ~ 56559838 (+)
G1466775 NA non-coding downstream 88408 56644514 ~ 56644724 (+)
G1466787 NA non-coding downstream 112444 56668550 ~ 56671026 (+)
G1466824 NA non-coding downstream 158449 56714555 ~ 56714779 (+)
G1466791 NA non-coding downstream 159880 56715986 ~ 56716374 (+)
G1466224 gem other upstream 332559 56219242 ~ 56220946 (+)
LOC110494143 LOC106565389 other upstream 426024 56088149 ~ 56127481 (+)
G1466131 NA other upstream 536892 56015577 ~ 56016613 (+)
G1466124 NA other upstream 555331 55996648 ~ 55998347 (+)
LOC110494110 LOC106565356 other upstream 2079033 54471705 ~ 54474472 (+)
G1467020 NA other downstream 561596 57117702 ~ 57118886 (+)
G1467030 NA other downstream 590407 57146488 ~ 57147741 (+)
G1467031 NA other downstream 593197 57149303 ~ 57150343 (+)
G1467159 LOC106565433 other downstream 922691 57478797 ~ 57554480 (+)

Expression


Co-expression Network