LOC110494160 (LOC105017078)


Basic Information

Item Value
gene id LOC110494160
gene name LOC105017078
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 56575737 ~ 56584088 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110494160
atggcccagctcatggtgcagcacgtcttccagaTCCATGGACTCCCAGTGGACATGGTCTCTGACTGGAAAACTCAGTTctcgtcccggttctggaagGCTGGGATAACATTCCACTACTGGAGTATCCCCTGCATCCTTCAGGCTGGGATAACATTCCACTACTGGAGTATCCCCTGCATCCTTCAGGCTGGGATAACATTCCACTACTGGAGTATCCCCTGCATCCTTCAGGCTGGGATAACATTCCACTACTGGAGTATCCCCTGCATCCTTCAGGCTGGGATAACATTCCACTACTGGAGTATCCCCTGCATCCTTCAGGCTGGGATAACATTCCACTACTGGAGTATCCCCTGCATCCTTCAGGCTGGGATAACATTCCACTACTGGAGTATCCCCTGCATCCTTCAGGCTAGGATAACATTCCACTACTGGAGTATCCCCTGCATCCTTCAGGCTGGGATAACATTCCACTACTGGAGTATCCCCTGCATCCTTCAGGCTGGGATAACATTCCACTACTGGAGTATCCCCTGCTTCCTTCAGGCTGGGATAACATTCCACTACTGGAGTATCCCCTGCATCCTTCAGGCTGGGATAACATTCCACTACTGGAGTATCCCCTGCATCCTTCAGGCTGGGATAACATTCTACTACTGGAGTATCCCCTGCATCCTTCAGGCTGGGATAACATTCCACTACTGGAGTATCCCCTGCATCCTTCAGGCTGGGATAACATTCCACTACTGGAGCCAGGTATCTGCAGAAGAGTCTGCGGAAGACATCGCCCCACATGCAACAGtcgatgaggaagaggaggatgagttgCTGGTGGAGGAAGATCAGGTCCCAGGCTCAGAATCAGAAGATGACTTAGATGAAGATGCTGCAGTTGGAGATGTAACCTCTCACcctgatgctgacaccaccagtCTTTGTGACTGGGGAAGAGTTCCCAGCCAATGAGATTGCGAAGTTCCTGGTGGGTTTCACCAATAAGGGAAGCCAGGATTTCACTGTCCATTCCCTGGAGGCCTCCTTCCGTTACCCTCAGGACTTCCAGTTCTACATCCAGAATTTCACAGCCTTGCCCCTGAGCACTGTGGTCCAGCCCCAGCAGCAGGCCTCCTTTGAGTACTCCTTCATACCTGCTCAGTCCATGGCTGGTCGTCCCTTCGGCCTGGTCATCCTACTCAACTACCAGGACAGTGAGGGCAACGGTTTCCAGATGGCCATTTACAACCAGACCGTCACTATCGTTGAACTGGAGGAGGGACTGGATGGAGAGACAATGTTCATGTACATCTTCCTGACTGGATTAGTTGTCTTGGCGATCTTTGGCATGTACCAGGTGCTGGAGTCTAGGACGAGGAAGAGGCTCCCAGTGAAGGTGGAGACGGGCACCGGTGGGATGAACGATGTGGACATCAGCTGGATTCGCCAGACCCTCAACATCATGAGCAAGGCATCGGCATCCCCTAAAGCCTCCCTGAGGAAACGCACCAAGAGAGCGGCTGGAGTAGATCAATAAATCATTCCATGATGCGGCCATCTTCATATCAATGTCCACCAGGCCCATGTTCAAGGCCCATGCCATCACAAGCTCCAACAACCCAACCAACATCAACCTCTGGGTGGACCTAGTTAGTTACTCAAGAGCTTTTCCGATATGCCCCCGATACATAGGCCTACACCAAACGTTCTTGGACTGAAGATAGTGGTGTCATGAATGTGTCCCATTCAGACACCACTCCAGCTGGACATTTTGAGACTGATATAAGACTAAAGACTGAGTAAATGGATCACCATGCCAGATCCATGAAAGATGGGTGAG
>TU1677617
AAGATCAGGTCCCAGGCTCAGAATCAGAAGATGACTTAGATGAAGATGCTGCAGTTGGAGATGTAACCTCTCACcctgatgctgacaccaccagtCTTTGTGACTGGGGAAGAGTTCCCAGCCAATGAGATTGCGAAGTTCCTGGTGGGTTTCACCAATAAGGGAAGCCAGGATTTCACTGTCCATTCCCTGGAGGCCTCCTTCCGTTACCCTCAGGACTTCCAGTTCTACATCCAGAATTTCACAGCCTTGCCCCTGAGCACTGTGGTCCAGCCCCAGCAGCAGGCCTCCTTTGAGTACT

Function

NR:

description
translocon-associated protein subunit alpha-like

GO:

id name namespace
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110494160 False 1837 mRNA 0.52 10 56575737 56584088
TU1677617 True 301 TUCP 0.52 4 56580391 56582721

Neighbor

gene id symbol gene type direction distance location
LOC110494158 LOC104945853 coding upstream 19631 56553505 ~ 56556106 (+)
rbck1 ub7i3 coding upstream 101962 56461343 ~ 56473775 (+)
LOC110494152 LOC106565396 coding upstream 123360 56447092 ~ 56452377 (+)
LOC110494151 LOC106565395 coding upstream 201012 56368032 ~ 56374726 (+)
LOC110494150 NA coding upstream 246695 56324591 ~ 56329073 (+)
LOC110494159 nrn1 coding downstream 771 56584859 ~ 56591591 (+)
LOC110494162 LOC106565402 coding downstream 14317 56598405 ~ 56617378 (+)
LOC110494163 inpp coding downstream 38452 56622540 ~ 56629007 (+)
LOC110494166 nab2 coding downstream 66000 56650088 ~ 56667854 (+)
LOC118940478 LOC108432887 coding downstream 116510 56700598 ~ 56722352 (+)
G1466742 NA non-coding upstream 15899 56559513 ~ 56559838 (+)
G1466707 NA non-coding upstream 38992 56533668 ~ 56536745 (+)
G1466708 NA non-coding upstream 69600 56494854 ~ 56506137 (+)
G1466702 tbc1d20 non-coding upstream 92325 56480987 ~ 56483412 (+)
G1466775 NA non-coding downstream 60426 56644514 ~ 56644724 (+)
G1466787 NA non-coding downstream 84462 56668550 ~ 56671026 (+)
G1466824 NA non-coding downstream 130467 56714555 ~ 56714779 (+)
G1466791 NA non-coding downstream 131898 56715986 ~ 56716374 (+)
G1466224 gem other upstream 354791 56219242 ~ 56220946 (+)
LOC110494143 LOC106565389 other upstream 448256 56088149 ~ 56127481 (+)
G1466131 NA other upstream 559124 56015577 ~ 56016613 (+)
G1466124 NA other upstream 577563 55996648 ~ 55998347 (+)
LOC110494110 LOC106565356 other upstream 2101265 54471705 ~ 54474472 (+)
G1467020 NA other downstream 533614 57117702 ~ 57118886 (+)
G1467030 NA other downstream 562425 57146488 ~ 57147741 (+)
G1467031 NA other downstream 565215 57149303 ~ 57150343 (+)
G1467159 LOC106565433 other downstream 894709 57478797 ~ 57554480 (+)
LOC110494206 LOC108254821 other downstream 914294 57498305 ~ 57548178 (+)

Expression


Co-expression Network