LOC110494159 (nrn1)


Basic Information

Item Value
gene id LOC110494159
gene name nrn1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 56584859 ~ 56591591 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568951.2
TCAATGAGGTGAGTGAGAGAAGCGCACGGAGAGGCAGCACGCACGAAAGGAGCAGATGGCGCAAGGCACCCTCCGCTGGGTTTGATATGGGATATGGGATTTACGTCGGTGAAGATTTCAAGATTTTGTGCATTTATTGCATTAGCGTCCCTGACTGTGGCAAGAGTCTCAGCGGCAGATGTGAAGTGTGAGAATATTTACAGGGACTTCTCTGACTGTGTTCTGGAGTTGGGGGAGAGCATGGATAACTACCAAGAGAATGTGACCAGCGAGATGGGAGTGGAAGCTGTGTGCAgCCACTGGGAGGCATTCCACACGTGTGCCCTGACGGCACTGTCCGGGTGTCAGGAGGAGGTGGGCTCCATCTGGGAGACCCTGAAAGAAGACTCCAGGAAGATCCGCTTCCAGGGCAGCCTCTTCGACCTGTGCAGCCCCAGCTCGGCCCCCAGCCTGCGCTCGCTTCTATCCCCTCTACCCCTGCTGCTCTTAGGCTTGCTGATCCTGGGAGGGCCCATCTGGCCATCCACATAGGTGGGGGATGCCTCCCTCCTCCTCGCTCCCAACCCCATGCACTCTCACATTCCCCGGGGTGGCCGGCTGCATTCTGAGCACATCTGAAAACTGAAGCcaaggattggggggggggggggatcagtgaGTAGAGAATGAATATGGATTAAGGTTAGCACACAGAGCCATGTCTCTATGGAGACGCCATAGACATCTTTGGTACTGGGTAATTAGAAGGCTATGATATCACAGAGCCATTGATGTCTGTGGAGAGACGGAGGGATACCTATATCGCTCTGGGTTACCCACCATAGATGTCTATGGCACTAGGTAATTTAGAAGGTTATGTTATCAGGGCCTTAGATATTAATGTCATCATTATTGATGAGTCTGGATAAAAATACACACCCAATACCCAAGCAATTGTAATGAAAACCTATTACAGTATACGCCTATGAAAAAAGCAATTTTAAAGCAATTGGTCAATTTTGTTGACAATCAAGTGAATCCTTTCAACTTTGACCTTTTGACCCCTACACACCAGCCCAATGTTTGGTGTTGCATGGCTGCTATAATGACACCAAAAAGGCATTTTTCCATATTTTTGCTCTGTTAAACAATTTCTTTGGTCATCCTGTTACAGTAGGTGCTGTTAAAGTCAGGCAATGCTGTTAACTGAAAATATTGTTCCTTGCTTTATTATGCACTTTACAGTAAAATGCCTAATTTACCGTTAGTCATTGTGGATAGTTATTGTACCTGAAAATGGTATCTGGTTATGTGAGAATCTTCAGTGTTGTTTTATGAATCTGTCCTGTATGGAAGCCCAAGTGTATGGCTGTCAATTCATTTAATATCATTGAGTCCATAACAACTATACACAACCGTACACAGTTCACGTCAAAGCACATTCAACTTTACAATAACACAGCTTACTGAGTAGAAATAAATACAAGATACTTTATTATGAaagctaaaatatatatatataatatataaatatatataaataatattaaaGTGgtactccagtctccttttcacctcagTTAGCACctgatttataaaataaaaattaggCGCATCTAAATAAGTGGTCAAAATCTGTCATGACACAGCACAAGTGGGGGTctttcctcttttgttctctattgcTCCTCTACTGTTCCTCAAGCAAGGAGGAGGCCGATGACATCACGGAAtcccatcagaccaactccttaAATGTCCTACTCCTCAAAGTTTgctcaaaacatattttttcaccctttagtgtgtgtactttactgtatttatacttgggatgTATCTTTtcaacagtaaatgtaaaaaaaatagctGGAGGACATCTTTAAGTTAAGGATTCTCTTAGGGCACCACCCTGCATTGTTAGCCCTAATGCCTCAGTGCAATACAGTATTTGATGTTGTCAACAGCTGCAATATATCATCAAACTGAGTCAATATAAATATGCAATTGAAGTCATTAAGTCGTTTTCTAGCAATATATTGTAGTGTTAGTGTATAGGTTTTCTGTTACTGTGCTCTAACCAAATGGGAAATTAGGGGTGAATGCTGACTTAGTGCTCAGACTTTTGCGCAAATCTCTCAATCAAAATCTCCACACACTACTTCAGCCCACACAGGATAATTCTTCTTATTTTCTTTTGTACCTTTCCAACATGATCTATAGTATGGATCTCTCTCTGCATGGTTGTGTCTAGATATTAGGCTAGATATTCAGTTTAGAATCCATTCCCAAGAGACATAATCCTCCAAAAGCATGTTTGTACTGGTTGTCCTCCACACCTAGTCTGTGCTCCTGAATGTGGTAGCATTCTGTCACCCAATCTGTGTGCCTGGTGCCAAGTGTCCATTATTATTTTTGAACAGCAATGAGTTTCGCATGAGCAATATGTGTTGTAAACACTTTATGGAGTGACTACTTTCCTTTTCAGTGAGATCGGCAGCTAACGAAAGCATGAAAAATATCACATTATTTAAGGGAGATATCATAACCACCAAGTATATTACTATACATGTATGACTGACTGATTATTGAATTACCACAGAGAATTACCACAGAGAAAAGTACATCAGTAAACACTACAGAATGTAAGAATTCAATATGTATGTGGTCTTTCAGAGATACCAACTACAGAGTACATTATTTACAAAAAGCCTGTATTAAGTATTGTATTGCAAAGTAATGTGTTTGAAATAAAGTATGAAGTTTGAAATATGA
>XM_036950246.1
GAGGTGAGTGAGAGAAGCGCACGGAGAGGCAGCACGCACGAAAGGAGCAGGTAACGTCACGGTTGTTCCATTCGTTTTGATCGAGAATAAACTGTAACTGATTCGGCAAATGTTAATCGCCTCCTGTTAACACGTATATGCCGCAACAAGTCATTTATTTTGATTGATTCATTTTACTTCGCTTTGATTTCATCTCAATTTATGAGCGATTCTGTTGGATCCCACAGATGGCGCAAGGCACCCTCCGCTGGGTTTGATATGGGATATGGGATTTACGTCGGTGAAGATTTCAAGATTTTGTGCATTTATTGCATTAGCGTCCCTGACTGTGGCAAGAGTCTCAGCGGCAGATGTGAAGTGTGAGAATATTTACAGGGACTTCTCTGACTGTGTTCTGGAGTTGGGGGAGAGCATGGATAACTACCAAGAGAATGTGACCAGCGAGATGGGAGTGGAAGCTGTGTGCAgCCACTGGGAGGCATTCCACACGTGTGCCCTGACGGCACTGTCCGGGTGTCAGGAGGAGGTGGGCTCCATCTGGGAGACCCTGAAAGAAGACTCCAGGAAGATCCGCTTCCAGGGCAGCCTCTTCGACCTGTGCAGCCCCAGCTCGGCCCCCAGCCTGCGCTCGCTTCTATCCCCTCTACCCCTGCTGCTCTTAGGCTTGCTGATCCTGGGAGGGCCCATCTGGCCATCCACATAGGTGGGGGATGCCTCCCTCCTCCTCGCTCCCAACCCCATGCACTCTCACATTCCCCGGGGTGGCCGGCTGCATTCTGAGCACATCTGAAAACTGAAGCcaaggattggggggggggggggatcagtgaGTAGAGAATGAATATGGATTAAGGTTAGCACACAGAGCCATGTCTCTATGGAGACGCCATAGACATCTTTGGTACTGGGTAATTAGAAGGCTATGATATCACAGAGCCATTGATGTCTGTGGAGAGACGGAGGGATACCTATATCGCTCTGGGTTACCCACCATAGATGTCTATGGCACTAGGTAATTTAGAAGGTTATGTTATCAGGGCCTTAGATATTAATGTCATCATTATTGATGAGTCTGGATAAAAATACACACCCAATACCCAAGCAATTGTAATGAAAACCTATTACAGTATACGCCTATGAAAAAAGCAATTTTAAAGCAATTGGTCAATTTTGTTGACAATCAAGTGAATCCTTTCAACTTTGACCTTTTGACCCCTACACACCAGCCCAATGTTTGGTGTTGCATGGCTGCTATAATGACACCAAAAAGGCATTTTTCCATATTTTTGCTCTGTTAAACAATTTCTTTGGTCATCCTGTTACAGTAGGTGCTGTTAAAGTCAGGCAATGCTGTTAACTGAAAATATTGTTCCTTGCTTTATTATGCACTTTACAGTAAAATGCCTAATTTACCGTTAGTCATTGTGGATAGTTATTGTACCTGAAAATGGTATCTGGTTATGTGAGAATCTTCAGTGTTGTTTTATGAATCTGTCCTGTATGGAAGCCCAAGTGTATGGCTGTCAATTCATTTAATATCATTGAGTCCATAACAACTATACACAACCGTACACAGTTCACGTCAAAGCACATTCAACTTTACAATAACACAGCTTACTGAGTAGAAATAAATACAAGATACTTTATTATGAaagctaaaatatatatatataatatataaatatatataaataatattaaaGTGgtactccagtctccttttcacctcagTTAGCACctgatttataaaataaaaattaggCGCATCTAAATAAGTGGTCAAAATCTGTCATGACACAGCACAAGTGGGGGTctttcctcttttgttctctattgcTCCTCTACTGTTCCTCAAGCAAGGAGGAGGCCGATGACATCACGGAAtcccatcagaccaactccttaAATGTCCTACTCCTCAAAGTTTgctcaaaacatattttttcaccctttagtgtgtgtactttactgtatttatacttgggatgTATCTTTtcaacagtaaatgtaaaaaaaatagctGGAGGACATCTTTAAGTTAAGGATTCTCTTAGGGCACCACCCTGCATTGTTAGCCCTAATGCCTCAGTGCAATACAGTATTTGATGTTGTCAACAGCTGCAATATATCATCAAACTGAGTCAATATAAATATGCAATTGAAGTCATTAAGTCGTTTTCTAGCAATATATTGTAGTGTTAGTGTATAGGTTTTCTGTTACTGTGCTCTAACCAAATGGGAAATTAGGGGTGAATGCTGACTTAGTGCTCAGACTTTTGCGCAAATCTCTCAATCAAAATCTCCACACACTACTTCAGCCCACACAGGATAATTCTTCTTATTTTCTTTTGTACCTTTCCAACATGATCTATAGTATGGATCTCTCTCTGCATGGTTGTGTCTAGATATTAGGCTAGATATTCAGTTTAGAATCCATTCCCAAGAGACATAATCCTCCAAAAGCATGTTTGTACTGGTTGTCCTCCACACCTAGTCTGTGCTCCTGAATGTGGTAGCATTCTGTCACCCAATCTGTGTGCCTGGTGCCAAGTGTCCATTATTATTTTTGAACAGCAATGAGTTTCGCATGAGCAATATGTGTTGTAAACACTTTATGGAGTGACTACTTTCCTTTTCAGTGAGATCGGCAGCTAACGAAAGCATGAAAAATATCACATTATTTAAGGGAGATATCATAACCACCAAGTATATTACTATACATGTATGACTGACTGATTATTGAATTACCACAGAGAATTACCACAGAGAAAAGTACATCAGTAAACACTACAGAATGTAAGAATTCAATATGTATGTGGTCTTTCAGAGATACCAACTACAGAGTACATTATTTACAAAAAGCCTGTATTAAGTATTGTATTGCAAAGTAATGTGTTTGAAATAAAGTATGAAGTTTGAAATATGA

Function

symbol description
nrn1 Predicted to enable identical protein binding activity. Predicted to be involved in neuron projection extension and regulation of synaptic vesicle exocytosis. Predicted to be located in extracellular space. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in glutamatergic synapse. Predicted to be anchored component of plasma membrane.

NR:

description
neuritin-like

GO:

id name namespace
GO:0007399 nervous system development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568951.2 False 2754 mRNA 0.41 4 56584859 56591591
XM_036950246.1 True 2926 mRNA 0.41 3 56584864 56591591

Neighbor

gene id symbol gene type direction distance location
LOC110494160 LOC105017078 coding upstream 771 56575737 ~ 56584088 (+)
LOC110494158 LOC104945853 coding upstream 28753 56553505 ~ 56556106 (+)
rbck1 ub7i3 coding upstream 111084 56461343 ~ 56473775 (+)
LOC110494152 LOC106565396 coding upstream 132482 56447092 ~ 56452377 (+)
LOC110494151 LOC106565395 coding upstream 210134 56368032 ~ 56374726 (+)
LOC110494162 LOC106565402 coding downstream 6814 56598405 ~ 56617378 (+)
LOC110494163 inpp coding downstream 30949 56622540 ~ 56629007 (+)
LOC110494166 nab2 coding downstream 58497 56650088 ~ 56667854 (+)
LOC118940478 LOC108432887 coding downstream 109007 56700598 ~ 56722352 (+)
si:ch73-190f16.2 LOC106583347 coding downstream 225266 56816857 ~ 56831816 (+)
G1466742 NA non-coding upstream 25021 56559513 ~ 56559838 (+)
G1466707 NA non-coding upstream 48114 56533668 ~ 56536745 (+)
G1466708 NA non-coding upstream 78722 56494854 ~ 56506137 (+)
G1466702 tbc1d20 non-coding upstream 101447 56480987 ~ 56483412 (+)
G1466775 NA non-coding downstream 52923 56644514 ~ 56644724 (+)
G1466787 NA non-coding downstream 76959 56668550 ~ 56671026 (+)
G1466824 NA non-coding downstream 122964 56714555 ~ 56714779 (+)
G1466791 NA non-coding downstream 124395 56715986 ~ 56716374 (+)
G1466224 gem other upstream 363913 56219242 ~ 56220946 (+)
LOC110494143 LOC106565389 other upstream 457378 56088149 ~ 56127481 (+)
G1466131 NA other upstream 568246 56015577 ~ 56016613 (+)
G1466124 NA other upstream 586685 55996648 ~ 55998347 (+)
G1467020 NA other downstream 526111 57117702 ~ 57118886 (+)
G1467030 NA other downstream 554922 57146488 ~ 57147741 (+)
G1467031 NA other downstream 557712 57149303 ~ 57150343 (+)
G1467159 LOC106565433 other downstream 887206 57478797 ~ 57554480 (+)
LOC110494206 LOC108254821 other downstream 906791 57498305 ~ 57548178 (+)

Expression


Co-expression Network