LOC110494162 (LOC106565402)


Basic Information

Item Value
gene id LOC110494162
gene name LOC106565402
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 56598405 ~ 56617378 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568958.2
AGTAATGTATTTAATTCTTCTGAGACTTTTATTTTgacacacatttctttcctccGTTTCTCCCACTTTACTGGATGGGCCCTGAAAGTTTGCAGGGTCAGGAGGAAAGTTTCTAGCGATCAACACAGCACATATTAGGGAGTACTGACTGGCTAGCATGCTTAGAGCACACATGTGTGTGTCGGTGCTATGTCGTCTCTCAGACAAGTTTGTGCTTCGGTGGATCGACAGGAAGATAGGATGTGTCCAACCTGCAGTTGGCCAAGTGAGATGGAAGACATGTAGACCAGCTCCCTTTTTGACAGCCAAGCCCAACCGCGCCCTCATAGATGAGCCAATTACCCTAGAGGGACGTCACCTCCCCCCTCACTCACCTATTACGGTGCGTGCCCGCATGCATAACGAGGACGGTGACCTGTGGGAAGCATTTTCTCACTACAACACAGATGGGAGGGGTGTTGTCAACTTGACCAGAGATGAGTCTGTAGGGGGTTCCTATGTGGGCTGTGAGCCCATGGGACTATTTTGGGCCCTGCAGCctgcacctggagagagagagggtctgagGCTGCGGAAGAAAAACGTTGAGACTCCGTACTCTGTACAGTTGTCCTTATTAGAGGGTCACATTCCGGTTCCATCCAGTCATGGTTCCAACAAGGAGCAGCgacagagaggggaacaggagcTGGCTGCAGTGACTGTGGAACGCTGGTACATGGCACCAGGGGTCCGGAGAACAGAGATCCGGCAGAACGGAGTAGTGGGGACCTTGTTCTTACCCCcagGTCCAGGTCCATTCCCAGCCATGGTGGACCTGTGGGGTATGGGCGGGGGGCTGATAGAGTACCGCTCAGCCTTGTTTGCTTCCCGAGGCTTTGCCAGTCTCTCCCTTGCCTACTTTGGCCATAAAGACATCCCTGGTCCACTCAACACTATCAATGTGGGAGATGCCTACTTCAAGACTGCGTTACAGTTTCTCCAGGACCACCCCCAGGTGTGTGGGGACAGGATGGGGGTCATGGGCCTCTCGTTCGGGGTCTACCTGGCTCTGCGAATCGCCACTCAAATTGATTTCAATCCCAGGTGTGTGATCGGAGTGAATGGTCCAATAGGAAGTTTCAACAAATTCTTGGACAGGGACGGCATGACAGAAAGCTTTGAAGGGAATCAGACGCACTGGAGTTACGATGAAGAGGGCTACGTCAGTTTCAGAGAAGTGACCACGCCCAACAACATTCCACCTGAGAACAAAGCAAATGTTGAAAACCTGTGCTGCCCCCTACTGTACATTGTGGGTGAAGACGACTTGAGCTGTGCAGCTATTGAGAACGCAGATGAGATTGAGAAGAAGATTAAAGATGCTGGTAGATCCCACCTGTTCACCCGCTTGTCATACCCCGGTGCTGGTCACCTGATTGAGCCGCCCTACACCCCCAACGCCCGAGCCTCCATGTGGACCACACAACCCAAGCAACTGATCACTCTCTGGGGAGGGCACCTGGCACCCCACGCTGCCGCCCAAGAGGACGCCTGGAAGAGGACCCTGGAATTTATGGAACGCCATCTAAGGGGAAAGGAAGACAAATAGCCTTTTGACCACTTTGGGATAGAATGGTCCATCTCATATGCATCACTCCTCAATGCAAGACTCAAAACTCACCCAACTGTCCAAATTCAAGTGGACTCAATGTTTTCTTTCACTATTTTCACCATACAGATTTTTATGTAAGTGTCTATGTATTGTTGTCATTGATTTGTTAGATTTTTATAAACACAACTATTATACCATAATAAAATCAATGTAATGTAAA
>XM_021568959.2
TAGTGTGAAATGGTCGCAAcagttataaatgaggccccaggtacTCTAATAAAAAGTTCACTCCCGAAACAGTGACATTGGGCTGGGAAGTTGGCAAGTTGCACAAGATAGAGGTTGAAGTTCAGTCTCAGAGAAAAAATAACTACCGTGAGCTAAAGAAACATTACTTCAATACTAGGCTACTCGGGGGAGTACTGACTGGCTAGCATGCTTAGAGCACACATGTGTGTGTCGGTGCTATGTCGTCTCTCAGACAAGTTTGTGCTTCGGTGGATCGACAGGAAGATAGGATGTGTCCAACCTGCAGTTGGCCAAGTGAGATGGAAGACATGTAGACCAGCTCCCTTTTTGACAGCCAAGCCCAACCGCGCCCTCATAGATGAGCCAATTACCCTAGAGGGACGTCACCTCCCCCCTCACTCACCTATTACGGTGCGTGCCCGCATGCATAACGAGGACGGTGACCTGTGGGAAGCATTTTCTCACTACAACACAGATGGGAGGGGTGTTGTCAACTTGACCAGAGATGAGTCTGTAGGGGGTTCCTATGTGGGCTGTGAGCCCATGGGACTATTTTGGGCCCTGCAGCctgcacctggagagagagagggtctgagGCTGCGGAAGAAAAACGTTGAGACTCCGTACTCTGTACAGTTGTCCTTATTAGAGGGTCACATTCCGGTTCCATCCAGTCATGGTTCCAACAAGGAGCAGCgacagagaggggaacaggagcTGGCTGCAGTGACTGTGGAACGCTGGTACATGGCACCAGGGGTCCGGAGAACAGAGATCCGGCAGAACGGAGTAGTGGGGACCTTGTTCTTACCCCcagGTCCAGGTCCATTCCCAGCCATGGTGGACCTGTGGGGTATGGGCGGGGGGCTGATAGAGTACCGCTCAGCCTTGTTTGCTTCCCGAGGCTTTGCCAGTCTCTCCCTTGCCTACTTTGGCCATAAAGACATCCCTGGTCCACTCAACACTATCAATGTGGGAGATGCCTACTTCAAGACTGCGTTACAGTTTCTCCAGGACCACCCCCAGGTGTGTGGGGACAGGATGGGGGTCATGGGCCTCTCGTTCGGGGTCTACCTGGCTCTGCGAATCGCCACTCAAATTGATTTCAATCCCAGGTGTGTGATCGGAGTGAATGGTCCAATAGGAAGTTTCAACAAATTCTTGGACAGGGACGGCATGACAGAAAGCTTTGAAGGGAATCAGACGCACTGGAGTTACGATGAAGAGGGCTACGTCAGTTTCAGAGAAGTGACCACGCCCAACAACATTCCACCTGAGAACAAAGCAAATGTTGAAAACCTGTGCTGCCCCCTACTGTACATTGTGGGTGAAGACGACTTGAGCTGTGCAGCTATTGAGAACGCAGATGAGATTGAGAAGAAGATTAAAGATGCTGGTAGATCCCACCTGTTCACCCGCTTGTCATACCCCGGTGCTGGTCACCTGATTGAGCCGCCCTACACCCCCAACGCCCGAGCCTCCATGTGGACCACACAACCCAAGCAACTGATCACTCTCTGGGGAGGGCACCTGGCACCCCACGCTGCCGCCCAAGAGGACGCCTGGAAGAGGACCCTGGAATTTATGGAACGCCATCTAAGGGGAAAGGAAGACAAATAGCCTTTTGACCACTTTGGGATAGAATGGTCCATCTCATATGCATCACTCCTCAATGCAAGACTCAAAACTCACCCAACTGTCCAAATTCAAGTGGACTCAATGTTTTCTTTCACTATTTTCACCATACAGATTTTTATGTAAGTGTCTATGTATTGTTGTCATTGATTTGTTAGATTTTTATAAACACAACTATTATACCATAATAAAATCAATGTAATGTAAA

Function

NR:

description
acyl-coenzyme A thioesterase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568958.2 False 1814 mRNA 0.50 12 56598405 56617378
XM_021568959.2 True 1864 mRNA 0.50 12 56609541 56617378

Neighbor

gene id symbol gene type direction distance location
LOC110494159 nrn1 coding upstream 6814 56584859 ~ 56591591 (+)
LOC110494160 LOC105017078 coding upstream 14317 56575737 ~ 56584088 (+)
LOC110494158 LOC104945853 coding upstream 42299 56553505 ~ 56556106 (+)
rbck1 ub7i3 coding upstream 124630 56461343 ~ 56473775 (+)
LOC110494152 LOC106565396 coding upstream 146028 56447092 ~ 56452377 (+)
LOC110494163 inpp coding downstream 5162 56622540 ~ 56629007 (+)
LOC110494166 nab2 coding downstream 32710 56650088 ~ 56667854 (+)
LOC118940478 LOC108432887 coding downstream 83220 56700598 ~ 56722352 (+)
si:ch73-190f16.2 LOC106583347 coding downstream 199479 56816857 ~ 56831816 (+)
LOC110494174 LOC106565412 coding downstream 246056 56863434 ~ 56871212 (+)
G1466742 NA non-coding upstream 38567 56559513 ~ 56559838 (+)
G1466707 NA non-coding upstream 61660 56533668 ~ 56536745 (+)
G1466708 NA non-coding upstream 92268 56494854 ~ 56506137 (+)
G1466702 tbc1d20 non-coding upstream 114993 56480987 ~ 56483412 (+)
LOC110494151 LOC106565395 non-coding upstream 223679 56368032 ~ 56374726 (+)
G1466775 NA non-coding downstream 27136 56644514 ~ 56644724 (+)
G1466787 NA non-coding downstream 51172 56668550 ~ 56671026 (+)
G1466824 NA non-coding downstream 97177 56714555 ~ 56714779 (+)
G1466791 NA non-coding downstream 98608 56715986 ~ 56716374 (+)
G1466224 gem other upstream 377459 56219242 ~ 56220946 (+)
LOC110494143 LOC106565389 other upstream 470924 56088149 ~ 56127481 (+)
G1466131 NA other upstream 581792 56015577 ~ 56016613 (+)
G1466124 NA other upstream 600231 55996648 ~ 55998347 (+)
G1467020 NA other downstream 500324 57117702 ~ 57118886 (+)
G1467030 NA other downstream 529135 57146488 ~ 57147741 (+)
G1467031 NA other downstream 531925 57149303 ~ 57150343 (+)
G1467159 LOC106565433 other downstream 861419 57478797 ~ 57554480 (+)
LOC110494206 LOC108254821 other downstream 881004 57498305 ~ 57548178 (+)

Expression


Co-expression Network