LOC118940478 (LOC108432887)



Basic Information


Item Value
gene id LOC118940478
gene name LOC108432887
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 56700598 ~ 56722352 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XR_005037020.1
tggacatagaggggtccccggcgtacacgatccgggccattctggactcaagacgccggAAAGGTAAGGTATCCATGAAGATTTTGTCTACGATGGGCGGTGGGGGAACCAGGTCCTCCAGCTTCAGGTAGAAGATGCGCTGCAGGCCCTGGGTGCAGAGGGTGCGCAGCTCAGGGAGCTTCCCCAGTAGTCGGGACAGGAAGTTGGGCTGGAGCCTCCCCGCATCGGAGCCACTGCTGGTCACATGGTCCCTCAGACAGGTGATGAGGCAGTTCTGGAACTCCTCCACCCGTTTGGGCTCTTTAAGGCCATGGCGATCTGAGGAGAAACCACAAGGAGAAACATCTTGATGAGAAACGTGAATgggcatttcactgtaccattTACAACTGCTGTGCATTGCTGCAAGGCAGGCGAATGAGGACACGTCCAGGTTCATGCGGTGGAGGCTCTGGGAGAAGTCCATGATGGAGTCGATCCAGTCGCCAAAGCCTCGCACACACTGCATACGGTGAAGTACCACACCGTTGCAGAAGATCAGCTTGTCTTTCTCAGGACTCGACCTAGACACAGAACAGTCTTAACATATATTGTAGAAACATTGGGCACACATTTGTGTTTTTTACAGAGTAAatgtatgcatcccaaatagcactattccctatttactgcaatacttttgaccagggcccatagggaataaggtgccatttgggatgcagacaatgGTTACAGTGGTAATTATACCTGTATGCTAGCCGGAGGATAAAGAGTTCCACGAAAGCAGATTCCAGGAGCAGCTCCTGGTCTTCCGGGCAGAAGGCGGTGAATTCTGGGATGGTCTCGGCCCATTTCCGAATCACATCCATGGTGCCTGTCAGCAGGTCGTAGAACTGCTGGATGTCATTGGCATCCTCTTTCTCTGATAGGCTGGCCACCGTCTCCTGGTACTGAGGAGTGGATAGATGAAAGAAAGGGATGAATCACTGCCTCTTATGTCCTTCTCTTCACAACATGTAGTGTGAAATGGGATCGAGATCACTGCAATCAAAGAAGCTTAATTACATAACTATATTATAGCGAGAAGCTTAACTTTAACAGCAGCAACTGGCTAAATTCTGAGAGAGATTCAGACAACTAATAATATGATGTTCCATGAGTCACATGTCTGGAGGTCCTACCTTGGAGTAGTCCAGCTTTCCGATGGCGGGGTTGGAGTCTATGTGAGCCCTGACAAGAGAGGCGATGATGTTGACGGGTGGGGTGGTGGACACTGACTCTAGCACTGTCTTGGATTTAGAGGGCAGACGACCCCTGCGACCTTTCAGGCTGTCTGTGCGGACAACTgtaagtgagagaaaaaaataatactCTCACTGACTGTACCTGTCTGAGATTCTCATGTGACTGTCACCATAAGCCTCCGTTTCACTGAATAACGACTATATCCATTTCAGTTGATATTTTTATACGACTGGGCACAGtaaacttgcctagttaaataaaggttaaataaaataaaaaagcttCAGTTTCA
>TU1677727
TGGTAATTATACCTGTATGCTAGCCGGAGGATAAAGAGTTCCACGAAAGCAGATTCCAGGAGCAGCTCCTGGTCTTCCGGGCAGAAGGCGGTGAATTCTGGGATGGTCTCGGCCCATTTCCGAATCACATCCATGGTGCCTGTCAGCAGGTCGTAGAACTGCTGGATGTCATTGGCATCCTCTTTCTCTGATAGGCTGGCCACCGTCTCCTGGTACTGGAGTAGTCCAGCTTTCCGATGGCGGGGTTGGAGTCTATGTGAGCCCTGACAAGAGAGGCGATGATGTTGACGGGTGGGGTGGTGGACACTGACTCTAGCACTGTCTTGGATTTAGAGGGCAGACGACCCCTGCGACCTTTCAGGCTGTCTGTGCGGACAACTgtaagtgagagaaaaaaataatactCTCACTGACTGTACCTGTCTGAGATTCTCATGTGACTGTCACCATAAGCCTCCGTTTCACTGAATAACGACTATATCCATTTCAGTTGATATTTTTATACGA

Function


NR:

description
nuclear receptor subfamily 4 group A member 1-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XR_005037020.1 False 1537 mRNA 0.49 3 56700598 56722352
TU1677727 True 507 lncRNA 0.50 2 56721551 56722289
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Neighbor


gene id symbol gene type direction distance location
LOC110494166 nab2 coding upstream 32744 56650088 ~ 56667854 (+)
LOC110494163 inpp coding upstream 71591 56622540 ~ 56629007 (+)
LOC110494162 LOC106565402 coding upstream 83220 56598405 ~ 56617378 (+)
LOC110494159 nrn1 coding upstream 109007 56584859 ~ 56591591 (+)
LOC110494160 LOC105017078 coding upstream 116510 56575737 ~ 56584088 (+)
si:ch73-190f16.2 LOC106583347 coding downstream 94505 56816857 ~ 56831816 (+)
LOC110494174 LOC106565412 coding downstream 141082 56863434 ~ 56871212 (+)
syt6b LOC106565416 coding downstream 199343 56921695 ~ 56966874 (+)
LOC110493225 LOC106565493 coding downstream 251070 56973422 ~ 56975836 (+)
inavab LOC106565419 coding downstream 256210 56978562 ~ 57026958 (+)
G1466787 NA non-coding upstream 29572 56668550 ~ 56671026 (+)
G1466775 NA non-coding upstream 55874 56644514 ~ 56644724 (+)
G1466742 NA non-coding upstream 140760 56559513 ~ 56559838 (+)
G1466707 NA non-coding upstream 163853 56533668 ~ 56536745 (+)
G1466708 NA non-coding upstream 194461 56494854 ~ 56506137 (+)
G1466825 NA non-coding downstream 3752 56726104 ~ 56726343 (+)
G1466833 NA non-coding downstream 12778 56735130 ~ 56735350 (+)
G1466835 NA non-coding downstream 14998 56737350 ~ 56737753 (+)
G1466848 NA non-coding downstream 42849 56765201 ~ 56765931 (+)
G1466850 LOC106565409 non-coding downstream 46379 56768731 ~ 56772239 (+)
G1466224 gem other upstream 479652 56219242 ~ 56220946 (+)
LOC110494143 LOC106565389 other upstream 573117 56088149 ~ 56127481 (+)
G1466131 NA other upstream 683985 56015577 ~ 56016613 (+)
G1466124 NA other upstream 702424 55996648 ~ 55998347 (+)
G1467020 NA other downstream 395350 57117702 ~ 57118886 (+)
G1467030 NA other downstream 424161 57146488 ~ 57147741 (+)
G1467031 NA other downstream 426951 57149303 ~ 57150343 (+)
G1467159 LOC106565433 other downstream 756445 57478797 ~ 57554480 (+)
LOC110494206 LOC108254821 other downstream 776030 57498305 ~ 57548178 (+)
G1466791 NA non-coding upstream 5177 56715986 ~ 56716374 (+)
G1466824 NA non-coding upstream 6772 56714555 ~ 56714779 (+)

Expression


LOC118940478(LOC108432887) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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LOC118940478(LOC108432887) Expression in each Bioproject

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LOC118940478(LOC108432887) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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Co-expression Network