LOC110494176 (LOC106565415)


Basic Information

Item Value
gene id LOC110494176
gene name LOC106565415
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 56886866 ~ 56889712 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568994.2
GTCACCAGTTTTTACCGAATGCGATGGAACAGCGTGGAATGAAAATCTTAAAATCTTTCTAGCGGTGGCTGAAATTCACAAACAACAGATGTCTTATCACTTGCAATCACTTGCTCGATGTGTGTTACTTGTTCTCCTTGTAAGTCACTGCCAAGAAGCCAGGCAGGGACAGGATCTCAAATGTGGAGCATGTAGGGCCATGGTGGATGAGATGGAGTGGGCGATATCCCAGGTGGATCCTAAGAAAATGATCCAGACAGGGTCTTTCAGAATCAACCCGGATGGTAGCCAGTCTATTCGAGAGGTTCCCTTCGCCCGCTCGGAAGGTAACCTCCTAGAGCTGATGGATGAGGTGTGTGAGCGGCTGAAGGATTACGGGGAACGTGTGGACCCCACCACCAGCAGGAAGACCTACGAAAGGGTCACGTCTCGGAACGGCAAATCCATGGACCTCTCAGAGGCTAAACTGGATTCCAGAGTCACATCCAGCCTGAAATATGCTTGTGAGACCATCGTTGAACAACATGAAGATGAGGTCATCGAATTCTTTGCACATGAAACGGACAACGTCAAAGACAAACTCTGCAGCAAGAGAACAGaccttTGCGACCATGCTCTGCAAATCCCTCATGATGAGCTATAATTCCGTCGTGCACTGGACGCAGCTCAGCGATACGCACAGCTACCTTCTACCGCGTTACAATGGGGACGAGGACTATCCGGAGTTGCTCCAGCACCAGGTGCTTAGGGTTGAGGGGAGGTGAGGATTGTAGACCGATGGAACAATCTTGTAATGTGTATTACTGCAATGAAGTGCTGTTTGTCTTACACAGACCTGTAGTAACAACAAATCACGCTGGATGATTTCATGAGTTTAAACACTCACGCTTACTCTTGAAGCAGAATGGTGAATAAAATTCTCTAACAATAGTTAGATACTGTAACTGTCCAACGTAGTTGCTGATTTTGTTATGCTTGTTGCTTTGATTCATTGTATTCTGTGAATGGAAAGGTTCGATTACACTTAAGCAACTCCAATTCGTTTTCTATTTTGTGTAATCTTGTCACTGTCATCTGTTTTACATACTTTgatggaaatatatatatttctacaaCAATCTGGAGTCATtgttttcaaataaaatgttatttctcacatgtgctgaatacaacaccttacaatGAAATTAActaaattaaagagcagcagtaaaatga
>XM_036950253.1
TGGCTACGTCACCAGTTTTTACCGAATGCGATGGAACAGCGTGGAATGAAAATCTTAAAATCTTTCTAGCGGTGGCTGAAATTCACAAACAACAGAGTTTCTAggcacagagtttctaaacccagaggcgcaacatcgcgAGACTTCCGGGAACAGCCAAGTCAATGGGAGAAGTGTAATTTGTTCCCGTGGTTGTACCTTTTAGATTTCGAGACAAGATGATGTCTTATCACTTGCAATCACTTGCTCGATGTGTGTTACTTGTTCTCCTTGTAAGTCACTGCCAAGAAGCCAGGCAGGGACAGGATCTCAAATGTGGAGCATGTAGGGCCATGGTGGATGAGATGGAGTGGGCGATATCCCAGGTGGATCCTAAGAAAATGATCCAGACAGGGTCTTTCAGAATCAACCCGGATGGTAGCCAGTCTATTCGAGAGGTTCCCTTCGCCCGCTCGGAAGGTAACCTCCTAGAGCTGATGGATGAGGTGTGTGAGCGGCTGAAGGATTACGGGGAACGTGTGGACCCCACCACCAGCAGGAAGACCTACGAAAGGGTCACGTCTCGGAACGGCAAATCCATGGACCTCTCAGAGGCTAAACTGGATTCCAGAGTCACATCCAGCCTGAAATATGCTTGTGAGACCATCGTTGAACAACATGAAGATGAGGTCATCGAATTCTTTGCACATGAAACGGACAACGTCAAAGACAAACTCTGCAGCAAGAGAACAGaccttTGCGACCATGCTCTGCAAATCCCTCATGATGAGCTATAATTCCGTCGTGCACTGGACGCAGCTCAGCGATACGCACAGCTACCTTCTACCGCGTTACAATGGGGACGAGGACTATCCGGAGTTGCTCCAGCACCAGGTGCTTAGGGTTGAGGGGAGGTGAGGATTGTAGACCGATGGAACAATCTTGTAATGTGTATTACTGCAATGAAGTGCTGTTTGTCTTACACAGACCTGTAGTAACAACAAATCACGCTGGATGATTTCATGAGTTTAAACACTCACGCTTACTCTTGAAGCAGAATGGTGAATAAAATTCTCTAACAATAGTTAGATACTGTAACTGTCCAACGTAGTTGCTGATTTTGTTATGCTTGTTGCTTTGATTCATTGTATTCTGTGAATGGAAAGGTTCGATTACACTTAAGCAACTCCAATTCGTTTTCTATTTTGTGTAATCTTGTCACTGTCATCTGTTTTACATACTTTgatggaaatatatatatttctacaaCAATCTGGAGTCATtgttttcaaataaaatgttatttctcacatgtgctgaatacaacaccttacaatGAAATTAActaaattaaagagcagcagtaaaatga
>XM_021568992.2
ATTTGGTTTGGGTCCTAATTGTCTCTGGCATAAATTCAGACAACTACCGGTAGCATCCCGTTGGCTACGTCACCAGTTTTTACCGAATGCGATGGAACAGCGTGGAATGAAAATCTTAAAATCTTTCTAGCGGTGGCTGAAATTCACAAACAACAGATGATGTCTTATCACTTGCAATCACTTGCTCGATGTGTGTTACTTGTTCTCCTTGTAAGTCACTGCCAAGAAGCCAGGCAGGGACAGGATCTCAAATGTGGAGCATGTAGGGCCATGGTGGATGAGATGGAGTGGGCGATATCCCAGGTGGATCCTAAGAAAATGATCCAGACAGGGTCTTTCAGAATCAACCCGGATGGTAGCCAGTCTATTCGAGAGGTTCCCTTCGCCCGCTCGGAAGGTAACCTCCTAGAGCTGATGGATGAGGTGTGTGAGCGGCTGAAGGATTACGGGGAACGTGTGGACCCCACCACCAGCAGGAAGACCTACGAAAGGGTCACGTCTCGGAACGGCAAATCCATGGACCTCTCAGAGGCTAAACTGGATTCCAGAGTCACATCCAGCCTGAAATATGCTTGTGAGACCATCGTTGAACAACATGAAGATGAGGTCATCGAATTCTTTGCACATGAAACGGACAACGTCAAAGACAAACTCTGCAGCAAGAGAACAGaccttTGCGACCATGCTCTGCAAATCCCTCATGATGAGCTATAATTCCGTCGTGCACTGGACGCAGCTCAGCGATACGCACAGCTACCTTCTACCGCGTTACAATGGGGACGAGGACTATCCGGAGTTGCTCCAGCACCAGGTGCTTAGGGTTGAGGGGAGGTGAGGATTGTAGACCGATGGAACAATCTTGTAATGTGTATTACTGCAATGAAGTGCTGTTTGTCTTACACAGACCTGTAGTAACAACAAATCACGCTGGATGATTTCATGAGTTTAAACACTCACGCTTACTCTTGAAGCAGAATGGTGAATAAAATTCTCTAACAATAGTTAGATACTGTAACTGTCCAACGTAGTTGCTGATTTTGTTATGCTTGTTGCTTTGATTCATTGTATTCTGTGAATGGAAAGGTTCGATTACACTTAAGCAACTCCAATTCGTTTTCTATTTTGTGTAATCTTGTCACTGTCATCTGTTTTACATACTTTgatggaaatatatatatttctacaaCAATCTGGAGTCATtgttttcaaataaaatgttatttctcacatgtgctgaatacaacaccttacaatGAAATTAActaaattaaagagcagcagtaaaatga

Function

NR:

description
protein canopy homolog 2-like isoform X1

GO: NA

KEGG:

id description
K22936 CNPY1_2; protein canopy 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568994.2 False 1218 mRNA 0.44 6 56886866 56889644
XM_036950253.1 False 1351 mRNA 0.44 7 56886866 56889651
XM_021568992.2 True 1289 mRNA 0.44 6 56886866 56889712
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110494175 LOC106583348 coding downstream 3450 56827756 ~ 56883416 (-)
LOC110494173 LOC106565408 coding downstream 25605 56836140 ~ 56861261 (-)
LOC110494171 LOC106565410 coding downstream 69104 56787282 ~ 56817762 (-)
LOC110494170 LOC106565409 coding downstream 100795 56747847 ~ 56786071 (-)
LOC110494169 LOC106565406 coding downstream 161194 56715985 ~ 56725672 (-)
LOC110493224 LOC106565414 coding upstream 10561 56900273 ~ 56920774 (-)
olfml3b olfml3 coding upstream 77230 56966942 ~ 56972632 (-)
cathy cathy coding upstream 223294 57113006 ~ 57116710 (-)
LOC110493226 npepl1 coding upstream 231731 57121443 ~ 57122707 (-)
stx16 LOC106565427 coding upstream 243285 57132997 ~ 57145296 (-)
G1467620 NA non-coding downstream 88234 56770049 ~ 56798632 (-)
G1467597 NA non-coding downstream 155480 56731009 ~ 56731386 (-)
G1467785 NA non-coding upstream 138792 57028504 ~ 57028975 (-)
G1467714 NA non-coding upstream 221416 57111128 ~ 57111974 (-)
G1467816 NA non-coding upstream 257599 57147311 ~ 57148712 (-)
G1467823 NA non-coding upstream 271938 57161650 ~ 57161886 (-)
G1467830 NA non-coding upstream 283836 57173548 ~ 57173797 (-)
elmo2 LOC106565399 other downstream 386541 56494856 ~ 56530610 (-)
dnai1.2 dnai1 other downstream 719529 56130667 ~ 56167366 (-)
LOC110494137 LOC106565384 other downstream 916152 55954473 ~ 55971001 (-)
G1464954 NA other downstream 2158971 54726796 ~ 54727895 (-)
G1464950 ccdc36 other downstream 2169376 54716104 ~ 54717490 (-)
hig1a hig1a other upstream 339795 57229440 ~ 57233433 (-)
G1470802 NA other upstream 2784829 59674541 ~ 59676694 (-)
LOC110494253 LOC106565590 other upstream 3101263 59990975 ~ 59999740 (-)
LOC110494257 LOC106565586 other upstream 3216957 60104033 ~ 60110249 (-)
G1471219 srgap3 other upstream 3486034 60375633 ~ 60376864 (-)

Expression

LOC110494176(LOC106565415) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 250.
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LOC110494176(LOC106565415) Expression in each Bioproject

Bar chart with 21 bars.
LOC110494176(LOC106565415) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network