syt6b (LOC106565416)


Basic Information

Item Value
gene id syt6b
gene name LOC106565416
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 56921695 ~ 56966874 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568996.2
AGCctgagaggcaaagagagagcaAGAATAAGAGGAGAGCGGGAAGTTGCATCTATTTTTCATGcagcaccatcaccatcaccatccctCTTCTGCCTTAGCTTTTCCCCCACTTTACTTCTCTGGTCCTGGATGAGAGCTAAAGACTGTGTGGGACTCAGGCTCACAGAGGAGAATGAGTTctgcggaggagagagaggaccatgATATGTACTGTGAGAAGGCGGTAGCCCTCATCATTGACCTCTGTCTGGACGACAGCCCACTGTTGCAGCCCAATACCTGCCAGGACTTCATCACACTGCTAGCCACCAACCAGAACCCAAACTCTGCAGGGTCAGATCTCTCCTTCAGCCTCCTACTCCTGGTGTTTGTGGCCTGTGGCCTGGGCCTGCTGAGCGTCATCGTCTTTGCCTCCTGGAAGCTGTGCAGGGTGCACTGGCGCACCAAGGACCTCTCCTCCAGTGCCACTGCCCTCGcccccccctcctctgcctctgacagACCCTACGTCAGAGCCTTGCCCGCACACGGCCACAGGCCTAAGCtcgtacacgcacacacgcacacacacgccatGGCGTCGGACAAGCTGAATCCTTTGGACCCGGCAAGTTTCCTAGAGGCAGCTGTGAAGATCAGCCACACGTCACCTGACATCCCTGCCGAGGTGCAGCTGTCCATGAAGGACCACTTCCTGCGGCGCACGCGTATGTCCAGGCAGACCACCGAGCCCAACTCCTCCAATAGGCACAGCTCCTTCAAGAAGCACCTCCCCCGACAAATGCACCATGTCACCAGCCTTGACCGAGGCAGCGACTTCCCCTATTCAGAGGACCAATCCACCAGCCTAGCCAGTTTGGGCCGCATCCAGCCAGAGCTCTACAAACAGAGCCCACTGGAGGCCGACGAGTCCTCCAAGAACTGCGCCGCCGCCAAGACCTGTGGTAAGATCAACTTCTCCCTCAAGTACGACTACGAGTCTGAGGCTCTCCTCGTCAACATCCTCAAGGCCTTCGACCTGCCCGCCAAGGACTTATGTGGCAGCTCCGACCCCTACGTCAAAATCTACCTCCTGCCTGACCGCAAGCGCAAGTTCCAGACCCGCGTCCATCGCAAGACGCTCAACCCCATGTTTGATGAGTCCTTCCAGTTCACCGTGCCCTACGAGGAGCTGGGCAGCAGGAAGCTGCACCTGAGCGTATTTGACTTTGACCGCTTCTCCCGCCACGACATGATCGGAGAGGTCATTCTGGAGAATCTGTTTGAGGTGTCGGACCTCTCCCGTGAGATGGCCATCTGGAAGGATATTCAGTACGCCACCTCTGAGAGTGTAGACCTGGGGGAgatcatgttctctctctgttacctgcCGACCGCAGGCCGACTCACCATGACCGTCATCAAGTGCAGGAACCTCAAGGCCATGGACATCACAGGATACTCAGACCCATATGTCAAGGTCTCCCTGGAGTGTGACGGACGGCGCTTGAAAAAGAAGAAAACCACCATCAAGAGGAACACTTTGAACCCCACCTATAACGAAGCTATCATCTTCGACATCCCCCCTGAGAACATGGACCAAGTCAGCCTGCACATATCCGTCATGGACTATGACTTGGTGGGACACAATGAAATCATAGGTGTAAACAGAGTGGGCAGTCATGCAGAGGGACTGGGCAGAGACCACTGGAACGAGATGTTAGCCTATCCACGCAAGCCCATCGCTCACTGGCACTCTCTACTGGAGGCAAGCAAGTCTCAGAAAGAGTGGAAAACCCGCACTGCAAGTTTTGACAGCCAAGGCTCTTGCCCTTCTCCAAGACTCCTGTCTAGTCCATGAGGGAGGAGCTAGAGTTTATACTCCACGACTCTACAAAGCCTGCCCTGTAGCAAGGCCTGAAATATGGAGTGTCTCAGACCCAGACCCACACATGTTGTGCCTCAGAATATGTAAAGTGCAGTAAATTGCTCTGGAATGACATTATCTCGccatcacacacccacacacatacacaaacacatttatCTTGTGCCCTCTTGGACAGCCACTTTGTCATGGTACGTATAGCCTAGTGTATACTGGGTCTGGTGGGATCATTGTTATTGCAACAATAGTTTTGCAGTTGAGCTCAGCCTGGTTTGGTTATACACCTGAGGTTAACATCTTTGTATATATGTAATGCCCTTTGATACTGACATCAATAATAGCACTGTATTTAGAATCACATATTTATGATATTATCAACATGTCTATCCCCCTGAATTTACTTTTCTGTTTCAATTGTTACCTGTGAAGTGTTTGCCAATAGTCTCTTGTTCAGGCAATGTCATGTACTTTGTTGAGGGAGTTGGCTTGACCTTTGACCCCTTTGCCTCATTAGCCTTGTGATAAGTGCTTGAATCAATGACTTTCCTCTGTTTTTTCCAAGCAATTTAGAGTATCTTTCCACTTTTGTATTGAACATGTGTATTTGTAACATAACTGTTTCCTTGTATTTTAAAGAAGTGATAATAAAGTTGTCGATTCTGGTTCTAACATTCCAAA

Function

NR:

description
synaptotagmin-6 isoform X2

GO: NA

KEGG:

id description
K19906 SYT6; synaptotagmin-6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568996.2 True 2548 mRNA 0.51 7 56921695 56966874

Neighbor

gene id symbol gene type direction distance location
LOC110494174 LOC106565412 coding upstream 50483 56863434 ~ 56871212 (+)
si:ch73-190f16.2 LOC106583347 coding upstream 91934 56816857 ~ 56831816 (+)
LOC118940478 LOC108432887 coding upstream 199343 56700598 ~ 56722352 (+)
LOC110494166 nab2 coding upstream 253841 56650088 ~ 56667854 (+)
LOC110494163 inpp coding upstream 292688 56622540 ~ 56629007 (+)
LOC110493225 LOC106565493 coding downstream 6548 56973422 ~ 56975836 (+)
inavab LOC106565419 coding downstream 11688 56978562 ~ 57026958 (+)
LOC110494181 rnpep coding downstream 63272 57030146 ~ 57042250 (+)
LOC110494182 LOC106565421 coding downstream 75551 57042425 ~ 57050988 (+)
adipor1a LOC101268928 coding downstream 84722 57051596 ~ 57060451 (+)
G1466863 LOC106583346 non-coding upstream 130616 56787434 ~ 56791079 (+)
G1466850 LOC106565409 non-coding upstream 149456 56768731 ~ 56772239 (+)
G1466848 NA non-coding upstream 155764 56765201 ~ 56765931 (+)
G1466835 NA non-coding upstream 183942 56737350 ~ 56737753 (+)
G1466939 olfml3 non-coding downstream 2450 56969324 ~ 56972726 (+)
G1466997 NA non-coding downstream 96043 57062917 ~ 57063155 (+)
G1466998 NA non-coding downstream 97107 57063981 ~ 57064182 (+)
G1466999 NA non-coding downstream 97675 57064549 ~ 57064897 (+)
LOC110494160 LOC105017078 other upstream 338974 56575737 ~ 56584088 (+)
G1466224 gem other upstream 700749 56219242 ~ 56220946 (+)
LOC110494143 LOC106565389 other upstream 794214 56088149 ~ 56127481 (+)
G1466131 NA other upstream 905082 56015577 ~ 56016613 (+)
G1466124 NA other upstream 923521 55996648 ~ 55998347 (+)
G1467020 NA other downstream 150828 57117702 ~ 57118886 (+)
G1467030 NA other downstream 179639 57146488 ~ 57147741 (+)
G1467031 NA other downstream 182429 57149303 ~ 57150343 (+)
G1467159 LOC106565433 other downstream 511923 57478797 ~ 57554480 (+)
LOC110494206 LOC108254821 other downstream 531508 57498305 ~ 57548178 (+)

Expression


Co-expression Network