inavab (LOC106565419)


Basic Information

Item Value
gene id inavab
gene name LOC106565419
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 56978562 ~ 57026958 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568999.2
TGGCCCATTCCCGTTGCGACGTCCCTCTTCAGAGTACGTAAGAAGCAATACTTCTACAACTTCTGGAAAACGTGGATGAATGTTGATATGGACATGCAAATAAATTGTACTACGCCCTACACAATTGGATATTTGACATTTTGCATAAGAAGGGCATCGTGAAACTAGACATTTTCCTGTTCCCTCACCCCTGTAAACCACCAGACTCACAGACATGGAGGGTAAAGAAGAGATCAGTGACACAGACAGTGGTATCATTCTCCACTCTGGCCCTGATAGTCCTGCCACCATTATGAAGGACGTGACCACTCACACCCGGGCCGTCAAGCTCAAGCACCAGTCACTGGAAGACCGACTAGAGCTCTGCCTACTGGAGCTGAAGAAGCTTTGCATCCGAGAGGCTGAGCTGACTGGTCGGCTGTCTGCAGACTACCCTTTGCTGCCTGGGGAGAAGCCACCTCAAATCCGCCAACGAATCGGAGCTGCCTTCAAACTAGAAGAGCAGAGCATCCCACAGGGAGCAGTGAACTCTGAGCTGAACTCTGTGGAAGCTGAGCTATCCCTGCAGTTGCAGATACACAAAGCGGTCCAAAGACTGTGCTGTGAGGAACACCAGAGCAAGGCGGTGAAGAGAAGCCGGTTACAGCAGTGCAAGCGTGAGGAGAAGAAAGTCAAACAACTGCAGGACACAGCGTTTCAGCTGCGCCTACAGCACGGGCGGTCTTCACCACGGCCAGACTGCACCAGCACACAGAGAGATCAGGGCACTTCTGATGATAGCTCTCTGTCGGATTCGGCACTGCTCGACGAAGTAGAGGTGATTAGTCAGTCATCTCAACCATCCGTGGAGCTCCCTCACCTAGGAGGACCAGTAGATCCTCCCCAGCCTCCCATTGACCCCTCACACCTCCTTGGGCCTAGCCCCCACGAGTCTCCCACTACTACTCCAACCCTGGAGGAGCTACAGTCCCTTTTCAACACCAGCCTGGAATTGGAGCCCCCTCCCATCGAGCACTCGCCCTGGACAGAGTCCAGTCTGGACCAGCCTTACCAGAAGACCAAGAAGAAGTCACACTCTGGTAGCAGAAAGTCAAGTAGTCCAGCCACGACCCCTGTGTTGCCTCCTGTGGACGCCTGTTGTAGAGACACGGCCCTGACACTGCAGTTCTCCTCCCATCTCAAACTGAGCTACACCCAGTCCAACAGCGCCCCATCCACCCCGGAGATGCACCTTCGCCGCCAGCTCTCTCTCAGACTTCCCAACAGTGAGCCTCCGTTGAACCTGGATAAGGATCGAGGACGTACCCGTGTTCCCAGGAGGCTACTAACGGATTACGTGGTAACGTCTCCCGGCGAGTCCCCTGTCCTGAGGGCAGGCTACGGAAATCCCATATACCATTCCAGCTCTGAGACTGAGGACAGTAACTCTGAACACTCTGCCCCATCCTACACCAGTTCACCATGTCGTGAGATGCCTTGTGACCTGCCCAGGCAGTCTCAGCTCACCTATAAGTACCAACACTCCAGCCCCAATGACAATCATCGACCAATGGCCTACCCCCCAGGCCCCGGCTTCTACCAGAACCCCCAGCACCAGTCCAACCCCAGCTTCCACAGGGGTTACTATGACGACAGGATGGTCTACCCTTCAGAGATGGACATGACCAGGCTGTATCATGGCACCCCGCTCCCCTGTCACCCCAGCCAGTATGAACACTGGTACGAGGAGGCCCCTTTGCACCCCCAGCGGGCTCTCAGGTCCCTGCCCCCTCACATCAGACTGTCCCGCGCCCCTTCGCTCCGGGAGTACCCTCACCACCCATCCAGAGGCCTCCCCCAGCAGGTGGTAAACGAAGAGCTCAAGTCGTGGCACCAGCGCAAACAGTTCAGACCTCGCTCCCTGGACAGACAGGGCGTGGCCAGGGTGAGGAGTGTACAGTCACCTCTCACCCAGCACAACAAGTACCATGAACAGGCTCCCCAGAGACGTGTCATCCAGAGGGCAGCGGACGGGTCCCCAGTGCAGTGGTTTGTGGATGATGACTCTGAGATCGTCAGTCAGGTGTAGGACTAGTGAGAGGGCCCCCAGTGCCACCCTCTCTCTGGAAAGCTCTGACCTCCCCCGGCCCACAGAGCCCTATTTATTCATTAATTTATTACATCACTGGACTTGGTGCTGatatgagatgagagagagcgagagactgggcATAGTATCAAAGAGGATCTGAGGCTTTATATTATTGACTTCAACATGTTACTAGGGCAACACGAAAGTCAATTAAAGGCACAAAGCAACAGACCACAACGTTCCCCTGGTGCCTCTCTTTTTACTGTGAAAGAGCCGCTGTGTTGAACATTCTTTCATGGTTAGTTTGTTAGCTGTTTTTTTGTACGAATCTATTGATGTGTTAAGTACTATCAAAAAtgtttctaaaatatatttagatattgTTTTTCTAAAAGGAAAAAGTTTCTCTTTAGAAATGAATACATAATTAAATAAAGATTTATAATGTTAATCCTA
>XM_036950254.1
TGGCCCATTCCCGTTGCGACGTCCCTCTTCAGAGTACGTAAGAAGCAATACTTCTACAACTTCTGGAAAACGTGGATGAATGTTGATATGGACATGCAAATAAATTGTACTACGCCCTACACAATTGGATATTTGACATTTTGCATAAGAAGGGCATCGTGAAACTAGACATTTTCCTGTTCCCTCACCCCTGTAAACCACCAGACTCACAGACATGGAGGGTAAAGAAGAGATCAGTGACACAGACAGTGGTATCATTCTCCACTCTGGCCCTGATAGTCCTGCCACCATTATGAAGGACGTGACCACTCACACCCGGGCCGTCAAGCTCAAGCACCAGTCACTGGAAGACCGACTAGAGCTCTGCCTACTGGAGCTGAAGAAGCTTTGCATCCGAGAGGCTGAGCTGACTGGTCGGCTGTCTGCAGACTACCCTTTGCTGCCTGGGGAGAAGCCACCTCAAATCCGCCAACGAATCGGAGCTGCCTTCAAACTAGAAGAGCAGAGCATCCCACAGGGAGCAGTGAACTCTGAGCTGAACTCTGTGGAAGCTGAGCTATCCCTGCAGTTGCAGATACACAAAGCGGTCCAAAGACTGTGCTGTGAGGAACACCAGAGCAAGGCGGTGAAGAGAAGCCGGTTACAGCAGTGCAAGCGTGAGGAGAAGAAAGTCAAACAACTGCAGGACACAGCGTTTCAGCTGCGCCTACAGCACGGGCGGTCTTCACCACGGCCAGACTGCACCAGCACACAGAGAGATCAGGGCACTTCTGATGATAGCTCTCTGTCGGATTCGGCACTGCTCGACGAAGAGGTGATTAGTCAGTCATCTCAACCATCCGTGGAGCTCCCTCACCTAGGAGGACCAGTAGATCCTCCCCAGCCTCCCATTGACCCCTCACACCTCCTTGGGCCTAGCCCCCACGAGTCTCCCACTACTACTCCAACCCTGGAGGAGCTACAGTCCCTTTTCAACACCAGCCTGGAATTGGAGCCCCCTCCCATCGAGCACTCGCCCTGGACAGAGTCCAGTCTGGACCAGCCTTACCAGAAGACCAAGAAGAAGTCACACTCTGGTAGCAGAAAGTCAAGTAGTCCAGCCACGACCCCTGTGTTGCCTCCTGTGGACGCCTGTTGTAGAGACACGGCCCTGACACTGCAGTTCTCCTCCCATCTCAAACTGAGCTACACCCAGTCCAACAGCGCCCCATCCACCCCGGAGATGCACCTTCGCCGCCAGCTCTCTCTCAGACTTCCCAACAGTGAGCCTCCGTTGAACCTGGATAAGGATCGAGGACGTACCCGTGTTCCCAGGAGGCTACTAACGGATTACGTGGTAACGTCTCCCGGCGAGTCCCCTGTCCTGAGGGCAGGCTACGGAAATCCCATATACCATTCCAGCTCTGAGACTGAGGACAGTAACTCTGAACACTCTGCCCCATCCTACACCAGTTCACCATGTCGTGAGATGCCTTGTGACCTGCCCAGGCAGTCTCAGCTCACCTATAAGTACCAACACTCCAGCCCCAATGACAATCATCGACCAATGGCCTACCCCCCAGGCCCCGGCTTCTACCAGAACCCCCAGCACCAGTCCAACCCCAGCTTCCACAGGGGTTACTATGACGACAGGATGGTCTACCCTTCAGAGATGGACATGACCAGGCTGTATCATGGCACCCCGCTCCCCTGTCACCCCAGCCAGTATGAACACTGGTACGAGGAGGCCCCTTTGCACCCCCAGCGGGCTCTCAGGTCCCTGCCCCCTCACATCAGACTGTCCCGCGCCCCTTCGCTCCGGGAGTACCCTCACCACCCATCCAGAGGCCTCCCCCAGCAGGTGGTAAACGAAGAGCTCAAGTCGTGGCACCAGCGCAAACAGTTCAGACCTCGCTCCCTGGACAGACAGGGCGTGGCCAGGGTGAGGAGTGTACAGTCACCTCTCACCCAGCACAACAAGTACCATGAACAGGCTCCCCAGAGACGTGTCATCCAGAGGGCAGCGGACGGGTCCCCAGTGCAGTGGTTTGTGGATGATGACTCTGAGATCGTCAGTCAGGTGTAGGACTAGTGAGAGGGCCCCCAGTGCCACCCTCTCTCTGGAAAGCTCTGACCTCCCCCGGCCCACAGAGCCCTATTTATTCATTAATTTATTACATCACTGGACTTGGTGCTGatatgagatgagagagagcgagagactgggcATAGTATCAAAGAGGATCTGAGGCTTTATATTATTGACTTCAACATGTTACTAGGGCAACACGAAAGTCAATTAAAGGCACAAAGCAACAGACCACAACGTTCCCCTGGTGCCTCTCTTTTTACTGTGAAAGAGCCGCTGTGTTGAACATTCTTTCATGGTTAGTTTGTTAGCTGTTTTTTTGTACGAATCTATTGATGTGTTAAGTACTATCAAAAAtgtttctaaaatatatttagatattgTTTTTCTAAAAGGAAAAAGTTTCTCTTTAGAAATGAATACATAATTAAATAAAGATTTATAATGTTAATCCTA
>XM_021568998.2
TCATCCTTCTCCTACCTTACTTCTAATCACAGTTTTCCTTTCAATCACTTCCATTCCAGTGGGGAATACGGGAATAGTTAGGCAGTTTTCAGGAGTCGGCTTTTGAACCAAATTATTGAAAATGGCATCGTGAAACTAGACATTTTCCTGTTCCCTCACCCCTGTAAACCACCAGACTCACAGACATGGAGGGTAAAGAAGAGATCAGTGACACAGACAGTGGTATCATTCTCCACTCTGGCCCTGATAGTCCTGCCACCATTATGAAGGACGTGACCACTCACACCCGGGCCGTCAAGCTCAAGCACCAGTCACTGGAAGACCGACTAGAGCTCTGCCTACTGGAGCTGAAGAAGCTTTGCATCCGAGAGGCTGAGCTGACTGGTCGGCTGTCTGCAGACTACCCTTTGCTGCCTGGGGAGAAGCCACCTCAAATCCGCCAACGAATCGGAGCTGCCTTCAAACTAGAAGAGCAGAGCATCCCACAGGGAGCAGTGAACTCTGAGCTGAACTCTGTGGAAGCTGAGCTATCCCTGCAGTTGCAGATACACAAAGCGGTCCAAAGACTGTGCTGTGAGGAACACCAGAGCAAGGCGGTGAAGAGAAGCCGGTTACAGCAGTGCAAGCGTGAGGAGAAGAAAGTCAAACAACTGCAGGACACAGCGTTTCAGCTGCGCCTACAGCACGGGCGGTCTTCACCACGGCCAGACTGCACCAGCACACAGAGAGATCAGGGCACTTCTGATGATAGCTCTCTGTCGGATTCGGCACTGCTCGACGAAGTAGAGGTGATTAGTCAGTCATCTCAACCATCCGTGGAGCTCCCTCACCTAGGAGGACCAGTAGATCCTCCCCAGCCTCCCATTGACCCCTCACACCTCCTTGGGCCTAGCCCCCACGAGTCTCCCACTACTACTCCAACCCTGGAGGAGCTACAGTCCCTTTTCAACACCAGCCTGGAATTGGAGCCCCCTCCCATCGAGCACTCGCCCTGGACAGAGTCCAGTCTGGACCAGCCTTACCAGAAGACCAAGAAGAAGTCACACTCTGGTAGCAGAAAGTCAAGTAGTCCAGCCACGACCCCTGTGTTGCCTCCTGTGGACGCCTGTTGTAGAGACACGGCCCTGACACTGCAGTTCTCCTCCCATCTCAAACTGAGCTACACCCAGTCCAACAGCGCCCCATCCACCCCGGAGATGCACCTTCGCCGCCAGCTCTCTCTCAGACTTCCCAACAGTGAGCCTCCGTTGAACCTGGATAAGGATCGAGGACGTACCCGTGTTCCCAGGAGGCTACTAACGGATTACGTGGTAACGTCTCCCGGCGAGTCCCCTGTCCTGAGGGCAGGCTACGGAAATCCCATATACCATTCCAGCTCTGAGACTGAGGACAGTAACTCTGAACACTCTGCCCCATCCTACACCAGTTCACCATGTCGTGAGATGCCTTGTGACCTGCCCAGGCAGTCTCAGCTCACCTATAAGTACCAACACTCCAGCCCCAATGACAATCATCGACCAATGGCCTACCCCCCAGGCCCCGGCTTCTACCAGAACCCCCAGCACCAGTCCAACCCCAGCTTCCACAGGGGTTACTATGACGACAGGATGGTCTACCCTTCAGAGATGGACATGACCAGGCTGTATCATGGCACCCCGCTCCCCTGTCACCCCAGCCAGTATGAACACTGGTACGAGGAGGCCCCTTTGCACCCCCAGCGGGCTCTCAGGTCCCTGCCCCCTCACATCAGACTGTCCCGCGCCCCTTCGCTCCGGGAGTACCCTCACCACCCATCCAGAGGCCTCCCCCAGCAGGTGGTAAACGAAGAGCTCAAGTCGTGGCACCAGCGCAAACAGTTCAGACCTCGCTCCCTGGACAGACAGGGCGTGGCCAGGGTGAGGAGTGTACAGTCACCTCTCACCCAGCACAACAAGTACCATGAACAGGCTCCCCAGAGACGTGTCATCCAGAGGGCAGCGGACGGGTCCCCAGTGCAGTGGTTTGTGGATGATGACTCTGAGATCGTCAGTCAGGTGTAGGACTAGTGAGAGGGCCCCCAGTGCCACCCTCTCTCTGGAAAGCTCTGACCTCCCCCGGCCCACAGAGCCCTATTTATTCATTAATTTATTACATCACTGGACTTGGTGCTGatatgagatgagagagagcgagagactgggcATAGTATCAAAGAGGATCTGAGGCTTTATATTATTGACTTCAACATGTTACTAGGGCAACACGAAAGTCAATTAAAGGCACAAAGCAACAGACCACAACGTTCCCCTGGTGCCTCTCTTTTTACTGTGAAAGAGCCGCTGTGTTGAACATTCTTTCATGGTTAGTTTGTTAGCTGTTTTTTTGTACGAATCTATTGATGTGTTAAGTACTATCAAAAAtgtttctaaaatatatttagatattgTTTTTCTAAAAGGAAAAAGTTTCTCTTTAGAAATGAATACATAATTAAATAAAGATTTATAATGTTAATCCTA
>TU1677837
CCCCAGCGGGCTCTCAGGTCCCTGCCCCCTCACATCAGACTGTCCCGCGCCCCTTCGCTCCGGGAGTACCCTCACCACCCATCCAGAGGCCTCCCCCAGCAGGTGGTAAACGAAGAGCTCAAGTCGTGGCACCAGCGCAAACAGTTCAGACCTCGCTCCCTGGACAGACAGGGCGTGGCCAGGGTGAGGAGTGTACAGTCACCTCTCACCCAGCACAACAAGTACCATGAACAGGCTCCCCAGAGACGTGTCATCCAGAGGGCAGCGGACGGGTCCCCAGTGCAGTGGTTTGTGGATGATGACTCTGAGATCGTCAGTCAGGTGTAGGACTAGTGAGAGGGCCCCCAGTGCCACCCTCTCTCTGGAAAGCTCTGACCTCCCCCGGCCCACAGAGCCCTATTTATTCATTAATTTATTACATCACTGGACTTGGTGCTGatatgagatgagagagagcgagagactgggcATAGTATCAAAGAGGATCTGAGGCTTTATATTATTGACTTCAACATGTTACTAGGGCAACACGAAAGTCAATTAAAGGCACAAAGCAACAGACCACAACGTTCCCCTGGTGCCTCTCTTTTTACTGTGAAAGAGCCGCTGTGTTGAACATTCTTTCATGGTTAGTTTGTTAGCTGTTTTTTTGTACGAATCTATTGATGTGTTAAGTACTATCAAAAAtgtttctaaaatatatttagatattgTTTTTCTAAAAGGAAAAAGTTTCTCTTT

Function

NR:

description
uncharacterized protein C1orf106 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568999.2 False 2527 mRNA 0.53 10 56978562 57026958
XM_036950254.1 False 2524 mRNA 0.53 10 56978562 57026958
XM_021568998.2 False 2498 mRNA 0.53 10 57011041 57026958
TU1677837 True 741 lncRNA 0.50 2 57024788 57026913

Neighbor

gene id symbol gene type direction distance location
LOC110493225 LOC106565493 coding upstream 2726 56973422 ~ 56975836 (+)
syt6b LOC106565416 coding upstream 11688 56921695 ~ 56966874 (+)
LOC110494174 LOC106565412 coding upstream 107350 56863434 ~ 56871212 (+)
si:ch73-190f16.2 LOC106583347 coding upstream 148801 56816857 ~ 56831816 (+)
LOC118940478 LOC108432887 coding upstream 256210 56700598 ~ 56722352 (+)
LOC110494181 rnpep coding downstream 3188 57030146 ~ 57042250 (+)
LOC110494182 LOC106565421 coding downstream 15467 57042425 ~ 57050988 (+)
adipor1a LOC101268928 coding downstream 24638 57051596 ~ 57060451 (+)
rabif LOC106565422 coding downstream 38086 57065044 ~ 57067062 (+)
LOC110494185 LOC106565423 coding downstream 46963 57073921 ~ 57105178 (+)
G1466939 olfml3 non-coding upstream 5836 56969324 ~ 56972726 (+)
G1466863 LOC106583346 non-coding upstream 187483 56787434 ~ 56791079 (+)
G1466850 LOC106565409 non-coding upstream 206323 56768731 ~ 56772239 (+)
G1466848 NA non-coding upstream 212631 56765201 ~ 56765931 (+)
G1466997 NA non-coding downstream 35959 57062917 ~ 57063155 (+)
G1466998 NA non-coding downstream 37023 57063981 ~ 57064182 (+)
G1466999 NA non-coding downstream 37591 57064549 ~ 57064897 (+)
G1467007 NA non-coding downstream 40895 57067853 ~ 57068261 (+)
G1467009 NA non-coding downstream 42605 57069563 ~ 57070276 (+)
LOC110494160 LOC105017078 other upstream 395841 56575737 ~ 56584088 (+)
G1466224 gem other upstream 757616 56219242 ~ 56220946 (+)
LOC110494143 LOC106565389 other upstream 851081 56088149 ~ 56127481 (+)
G1466131 NA other upstream 961949 56015577 ~ 56016613 (+)
G1466124 NA other upstream 980388 55996648 ~ 55998347 (+)
G1467020 NA other downstream 90744 57117702 ~ 57118886 (+)
G1467030 NA other downstream 119555 57146488 ~ 57147741 (+)
G1467031 NA other downstream 122345 57149303 ~ 57150343 (+)
G1467159 LOC106565433 other downstream 451839 57478797 ~ 57554480 (+)
LOC110494206 LOC108254821 other downstream 471424 57498305 ~ 57548178 (+)

Expression


Co-expression Network