LOC110494181 (rnpep)


Basic Information

Item Value
gene id LOC110494181
gene name rnpep
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 57030146 ~ 57042250 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569001.2
TGCTGGAGAGGTGCAGCTGTTGGATGCCAATCGCCGATATACACCCCACCGAGGAAAAAGAAGAAGCGGTGCAGCCAATCGTTGGAGGAAGACTCACGTTTACCCAGTTATTCttgctgtaggctactaaaaTATGGATAAATCTCTCAAACTGCACTCCGATCTAGCAGAGGACGTGGCTACGTCTTCGAGCTTTCGTCAATTCAAGATAAAACACTTCCACTTGGATCTAAGCGTGGACTTTGAGAAGAGAACTTTGAGAGGAACTGAAACGCTACAGCTGAAATGCATCCAAGATTCTCAAAGCGAGCTACTGTTGGacattcatccctccctctcaatgCAAGAGGTGTCCTACTGCCGAAGTGAAGATGATTCGGATTCAGTGAAAGTAGAATTCATGACGCGCAATTTCACCAGTTATGGCACCACACTGGTTGTAAAATTCCCAGCACCATGTAAAATTGAGGAACAGTTTCGAGTGGTGGTCAAGTTTCTTGCATCCGATGGACCAGGGGTGTGCTGGCTGGATCCAGAGCAGACAGCTGGGAAGGCCAAGCCTTACGTCTTCACCCAGGGCCAGGCCGTGCTCAACCGCTCCTTCTTCCCCTGCTTTGACACGCCGGCCGTCAAGAGCACCTACTCGGCCTCCGTGAAGGTTCCTGATGGTTTCACAGCAGTCATGAGTGCCAGTAAGGGAGAACACAGGATGGCAGACAACACGTTCCTGTTCACCATGGAACAGCCCATCCCCTCCTACCTGGTGGCCTTGGCTGTAGGAGACTTGGTCTCTGCGGAGGTGGGGCCAAGGACCCGAGTATGGACAGAGCCATGCCTGCTGCAGGCAGCCAAGCAGGAGTACGACGGAGTCATCGAGGAGTTTCTGGTTGTGGGGGAGAAACTATTTGGACCCTACGTCTGGGGAAGGTATGACGTGCTGTTCATGCCACCGTCATTCCCCTTCGGGGGTATGGAGAACCCCTGCCTCACTTTCGTCACCCCCTGCCTCCTGGCTGGAGACCGCTCACTGGCTGACGTCATTGTGCACGAGATCTGCCACAGCTGGTTCGGTAATCTGGTAACCAATGCCAACTGGGGTGACTTCTGGCTCAACGAGGGCTTCACCATGTACGCCCAGCGCCGGGTGTGCAGGGAGATCTACGGAGAGGCCATCACTAGTCTGGAGGCTGCGACTGGGAGGGCTTTACTCAGACAGCACATGGACAACACCGGAGAGGACCACCCTCTCAATAAACTGCGTGTGAAGATCAAACCAGGTGTTGACCCTGATGACACTTACAATGAGACGCCTTATGAGAAGGGCTTCTGTTTTGTCTCTTACCTGGCCCACCTGGCTGGAGACCAGAGTCACTTCGATGCCTTCCTCAAGGCCTACATTGACAAGTTCAAATTCCGCAGTGTTATGGCAGAGGACGCTCTGGAGTTCTTCCTGGAGTATTTCCCTGACCTGAAGAAGAAAGGAGTAGATATGATTAAGGGTCTGGAATTTGATAGCTGGCTCAATGTGCCCGGTTGGCCTCCCTACCTCCCTGACCTGTCGGCTGGCAAGAGCCTGATGAAGCCTGCTGAGCAGCTGTCAGAGCTGTGGGCTGCCGAGGTCCTGGATATGGCCAGCATCAAGAAGACCAACATCCAGGCCTGGAAGACTAACCAGGCTGTCTACTTCTTGGAAAAGATCATAGAGAAGTCCCCACTCCCTAGAGGTAATATGGAGAAACTGGAGGAGCAGTACCTTCACATCGTGATGTCAAACAACGCTGAGCTACGACTGCGCTGGGCCCAGATCGTCGCCAAGAATCATCACCAGCCAGGATATCAACATGTGCGCAGCTTCCTCAGCTGCCAGGGGAAACAGAAGTACACACTGCCTGTGTACCGTGCACTGTGGAATGGATCAGAGGAGACCAGGGCTTTGGCAACAGAGATCTTCAGTGCCACCTCCCATCAGCTCCATGTCAACGTCCGCAACTACGTCAAGAAGATCCTTGCCTGTGCGCCATCATAGGAGCTGAACATGAGATCCAGAGTCTAGTCTCACTGACCCTGGCCTAGAGATATAATAGAGGAGTAGTAGTCTTACCCAGTACTTTCAGATGGCCTCCTTTATTTAAATGTACTGTACCAGGTTCGATTGAGATGCCAATATCATCTAGCTTGGTCAGTGGTTACCAAGGAAAAGAGGCCAATTTACATATTTTACGGCATTTTTGGTATTTACGCAAGCCAGCCTTAAAGGCTCTACTGTGGGTATGTCTTACTTTAAAGTACTTACTGTGGGAGGGCATACAACTAATTTAAGTAGtattggtaaaaaaaataaaaaaata
>XM_021569002.2
GCTGGAGAGGTGCAGCTGTTGGATGCCAATCGCCGATATACACCCCACCGAGGAAAAAGAAGAAGCGGTGCAGCCAATCGTTGGAGGAAGACTCACGTTTACCCAGTTATTCttgctgtaggctactaaaaTATGGATAAATCTCTCAAACTGCACTCCGATCTAGCAGAGGACGTGGCTACGTCTTCGAGCTTTCGTCAATTCAAGATAAAACACTTCCACTTGGATCTAAGCGTGGACTTTGAGAAGAGAACTTTGAGAGGAACTGAAACGCTACAGCTGAAATGCATCCAAGATTCTCAAAGCGAGCTACTGTTGGacattcatccctccctctcaatgCAAGAGGTGTCCTACTGCCGAAGTGAAGATGATTCGGATTCAGTGAAAGTAGAATTCATGACGCGCAATTTCACCAGTTATGGCACCACACTGGTTGTAAAATTCCCAGCACCATGTAAAATTGAGGAACAGTTTCGAGTGGTGGTCAAGTTTCTTGCATCCGATGGACCAGGGATATCATGGCTGGAGCCTGCTCAGACTGCCGAAAAGAAAGAGCCTTTCCTTTACACCTCTGGCTTCCCTGTGCTGAACCGCAGCCTGTTCCCTGGCTTCCACACCCCCATGACTAAGAGCCCCTACTCGGTTGCTGTGAAGGTTCCTGATGGTTTCACAGCAGTCATGAGTGCCAGTAAGGGAGAACACAGGATGGCAGACAACACGTTCCTGTTCACCATGGAACAGCCCATCCCCTCCTACCTGGTGGCCTTGGCTGTAGGAGACTTGGTCTCTGCGGAGGTGGGGCCAAGGACCCGAGTATGGACAGAGCCATGCCTGCTGCAGGCAGCCAAGCAGGAGTACGACGGAGTCATCGAGGAGTTTCTGGTTGTGGGGGAGAAACTATTTGGACCCTACGTCTGGGGAAGGTATGACGTGCTGTTCATGCCACCGTCATTCCCCTTCGGGGGTATGGAGAACCCCTGCCTCACTTTCGTCACCCCCTGCCTCCTGGCTGGAGACCGCTCACTGGCTGACGTCATTGTGCACGAGATCTGCCACAGCTGGTTCGGTAATCTGGTAACCAATGCCAACTGGGGTGACTTCTGGCTCAACGAGGGCTTCACCATGTACGCCCAGCGCCGGGTGTGCAGGGAGATCTACGGAGAGGCCATCACTAGTCTGGAGGCTGCGACTGGGAGGGCTTTACTCAGACAGCACATGGACAACACCGGAGAGGACCACCCTCTCAATAAACTGCGTGTGAAGATCAAACCAGGTGTTGACCCTGATGACACTTACAATGAGACGCCTTATGAGAAGGGCTTCTGTTTTGTCTCTTACCTGGCCCACCTGGCTGGAGACCAGAGTCACTTCGATGCCTTCCTCAAGGCCTACATTGACAAGTTCAAATTCCGCAGTGTTATGGCAGAGGACGCTCTGGAGTTCTTCCTGGAGTATTTCCCTGACCTGAAGAAGAAAGGAGTAGATATGATTAAGGGTCTGGAATTTGATAGCTGGCTCAATGTGCCCGGTTGGCCTCCCTACCTCCCTGACCTGTCGGCTGGCAAGAGCCTGATGAAGCCTGCTGAGCAGCTGTCAGAGCTGTGGGCTGCCGAGGTCCTGGATATGGCCAGCATCAAGAAGACCAACATCCAGGCCTGGAAGACTAACCAGGCTGTCTACTTCTTGGAAAAGATCATAGAGAAGTCCCCACTCCCTAGAGGTAATATGGAGAAACTGGAGGAGCAGTACCTTCACATCGTGATGTCAAACAACGCTGAGCTACGACTGCGCTGGGCCCAGATCGTCGCCAAGAATCATCACCAGCCAGGATATCAACATGTGCGCAGCTTCCTCAGCTGCCAGGGGAAACAGAAGTACACACTGCCTGTGTACCGTGCACTGTGGAATGGATCAGAGGAGACCAGGGCTTTGGCAACAGAGATCTTCAGTGCCACCTCCCATCAGCTCCATGTCAACGTCCGCAACTACGTCAAGAAGATCCTTGCCTGTGCGCCATCATAGGAGCTGAACATGAGATCCAGAGTCTAGTCTCACTGACCCTGGCCTAGAGATATAATAGAGGAGTAGTAGTCTTACCCAGTACTTTCAGATGGCCTCCTTTATTTAAATGTACTGTACCAGGTTCGATTGAGATGCCAATATCATCTAGCTTGGTCAGTGGTTACCAAGGAAAAGAGGCCAATTTACATATTTTACGGCATTTTTGGTATTTACGCAAGCCAGCCTTAAAGGCTCTACTGTGGGTATGTCTTACTTTAAAGTACTTACTGTGGGAGGGCATACAACTAATTTAAGTAGtattggtaaaaaaaataaaaaaataaaagtaggTATTACTTTGTTGTATTGAGTATGTAAACCATTGATTATGCTTTTTTTCACCCAAACTAAGCTGTATTTTAAATGTTCCAAACAGTAAAAGTACATTCTTCTGAAATAAATCTAGTAATTGGTTTTCAAGA

Function

symbol description
rnpep Predicted to enable metalloaminopeptidase activity. Predicted to be involved in proteolysis. Predicted to be active in extracellular space. Is expressed in several structures, including anterior axial hypoblast; hindbrain neural plate; lens; pronephric duct; and solid lens vesicle. Orthologous to human RNPEP (arginyl aminopeptidase).

NR:

description
aminopeptidase B isoform X2

GO:

id name namespace
GO:0019370 leukotriene biosynthetic process biological_process
GO:0006508 proteolysis biological_process
GO:0005615 extracellular space cellular_component
GO:0004177 aminopeptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01260 RNPEP; aminopeptidase B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569001.2 False 2348 mRNA 0.51 11 57030146 57042111
XM_021569002.2 True 2486 mRNA 0.49 11 57030147 57042250

Neighbor

gene id symbol gene type direction distance location
inavab LOC106565419 coding upstream 3188 56978562 ~ 57026958 (+)
LOC110493225 LOC106565493 coding upstream 54310 56973422 ~ 56975836 (+)
syt6b LOC106565416 coding upstream 63272 56921695 ~ 56966874 (+)
LOC110494174 LOC106565412 coding upstream 158934 56863434 ~ 56871212 (+)
si:ch73-190f16.2 LOC106583347 coding upstream 200385 56816857 ~ 56831816 (+)
LOC110494182 LOC106565421 coding downstream 175 57042425 ~ 57050988 (+)
adipor1a LOC101268928 coding downstream 9346 57051596 ~ 57060451 (+)
rabif LOC106565422 coding downstream 22794 57065044 ~ 57067062 (+)
LOC110494185 LOC106565423 coding downstream 31671 57073921 ~ 57105178 (+)
nelfcd nelfd coding downstream 63568 57105818 ~ 57111562 (+)
G1466939 olfml3 non-coding upstream 57420 56969324 ~ 56972726 (+)
G1466863 LOC106583346 non-coding upstream 239067 56787434 ~ 56791079 (+)
G1466850 LOC106565409 non-coding upstream 257907 56768731 ~ 56772239 (+)
G1466997 NA non-coding downstream 20667 57062917 ~ 57063155 (+)
G1466998 NA non-coding downstream 21731 57063981 ~ 57064182 (+)
G1466999 NA non-coding downstream 22299 57064549 ~ 57064897 (+)
G1467007 NA non-coding downstream 25603 57067853 ~ 57068261 (+)
G1467009 NA non-coding downstream 27313 57069563 ~ 57070276 (+)
LOC110494160 LOC105017078 other upstream 447425 56575737 ~ 56584088 (+)
G1466224 gem other upstream 809200 56219242 ~ 56220946 (+)
LOC110494143 LOC106565389 other upstream 902665 56088149 ~ 56127481 (+)
G1466131 NA other upstream 1013533 56015577 ~ 56016613 (+)
G1466124 NA other upstream 1031972 55996648 ~ 55998347 (+)
G1467020 NA other downstream 75452 57117702 ~ 57118886 (+)
G1467030 NA other downstream 104263 57146488 ~ 57147741 (+)
G1467031 NA other downstream 107053 57149303 ~ 57150343 (+)
G1467159 LOC106565433 other downstream 436547 57478797 ~ 57554480 (+)
LOC110494206 LOC108254821 other downstream 456132 57498305 ~ 57548178 (+)

Expression


Co-expression Network