LOC110494182 (LOC106565421)


Basic Information

Item Value
gene id LOC110494182
gene name LOC106565421
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 57042425 ~ 57050988 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569004.2
TTGGACAAATTTGGTGTAACCGCTAAATACGCCCTCCCATCAACTAAATTCTTTGGGTGTGCCTTCACTGATAAATTATAGCTAGCCAAGTACATCTTCGCTTCAACAATATAACCTTGCTCTGGGGAATTCAGAATCGCCATGAAGTACGCATTGTCCACGACGGTAGCTGTGACTGCTGGGGTGGTAGTGCTGTCCACTGTGGGCATAATTGTAGCCCTCTATCTAGGCAAGAAGAAGAAGCCTCCAGTCACCTTGCTTGACCCTACTCAAAAATACCACCTAACACTCATCGATAAAGAGGTGATCAACCATGATACTCGCAGGTTTCGCTTTCGACTTCCCTCAACAGAACATATCCTGGGACTCCCTGTAGGGAATCATGTATACCTCTCTGCCCGTATTGACGGCAGCCTGGTAGTCAGACCATATACACCTGTGTCCAGCAACGACGACAAAGGATATGTTGATCTGGTTGTGAAGATCTACTTTAGGAATGTGCACCTCAAGTTTCCTGACGGGGGGAAGATGTCCCAATACCTGGAGAGTTTGCAGCTGGGAGACGTGGTAGACTTCAGAGGACCAGGAGGCCTGCTGGAGTACAAAGGACATGGGCAGTTTGCAGTTCAGACAGACAAAAAGTCTCCTGCTGAGATAAAAGTTGCCACTACTGTGGGTCTGATAGCTGGAGGAACAGGCATCACCCCTATGCTACAGCTGGTGCGCGCCATCATGAAGGACCCCAGTGACAGCACCACCTGCAGCCTGCTGTATGCTAACCAGactgagaaggacatcctgcTGAGGGATGAGCTGGAGGAGGTCCAAGTCCGACACCCAGACCGCTTCAAGCTGTGGTTTACAGTGGACAGGGCACCCGAGGGCTGGGAGTACAGTGAGGGCTTCATCAACGCAGACATGATCCAGGAGCACTTGCCGGCCCCCAGTGACGACACCTTGGTGCTCATGTGCGGTCCGCCCCCCATGATCCAGTTTGCCTGCAACCCTAACCTGGACAAGTTGGCCTACCGGCAGAGTCAGCGCTTTGCCTACTAGTCTCCAGCCTAGGGACTCTCCTCCCAGCCACCCCCGGCCTGGGCATTCTCAATTCAACAAGGACATCAATTCAGCTGGAACTACTGCTTGAGAACCAGCATCTCTTTATAGAATATTCGGTTAAAACTATTGCAGAGTTCCGGGACCTAAACATAAACAAtaccggcacccaaaatgagtaacGGCTCCTATTTCAGTCCACTAGAAGCACTGAATCAGTCTACTGCCTAAACCCCCATCTGATAAGTGCAGACATGCCCTCTTATATATCAGGTTGATCATTAAATGCTCACTTGCAACCAAAGTCCTACCTTTGTATTATTGGCCTCCACTAAGCTCTGCCTCCATCCCCTGCTGATGGCTACAATTGATTGGGCCCTGTGTATTTTTAGGTGAGCTGTTGAGGCTTTGATTTATTATTGATGTTCTTACCCTTGCACGTTCTTCCTaagaacaggacagagagaacagaccctAAAGATAAAGCCACATACTGAACTGAATTACGCCCAGGGGTGCAGTGCTGAATATGAGAAGGCCGCCCAGGCAGCATTGCTTTAAATGCACACATGACAAATGATATGCACTTAAGTATTTCAGCTTCTGCAGAGATGCATTATACTGTATTTTGGCATCTGCTTTGAGTGttacaaatatatacagtgcccttTGTATTTACTGGGTTGTTGACAATTTTGTTGttattttggctctgtactccagaacTTTGAATTTGAAATgttacaatgactatgaggttaaagtgcagactgtcagctttaatgtgACTTTTTGCACTTTTTGTACATTGTCCTctcattttaggggaccaaaagtattgggacaaattcacttgtgtgtattaaagtagtcaaaagtttagtattttgtCCAATATTCACAGCAATCGATGATTAAATTAAGCTTGTGACTCTAAACATGTGTTGGAGTCATTTGCTGttggttttg
>XM_036950255.1
TGGACAAATTTGGTGTAACCGCTAAATACGCCCTCCCATCAACTAAATTCTTTGGGTGTGCCTTCACTGATAAATTATAGCTAGCCAAGTACATCTTCGCTTCAACAATATAACCTTGCTCTGGGGAATTCAGAATCGCCATGAAGTACGCATTGGTGATCAACCATGATACTCGCAGGTTTCGCTTTCGACTTCCCTCAACAGAACATATCCTGGGACTCCCTGTAGGGAATCATGTATACCTCTCTGCCCGTATTGACGGCAGCCTGGTAGTCAGACCATATACACCTGTGTCCAGCAACGACGACAAAGGATATGTTGATCTGGTTGTGAAGATCTACTTTAGGAATGTGCACCTCAAGTTTCCTGACGGGGGGAAGATGTCCCAATACCTGGAGAGTTTGCAGCTGGGAGACGTGGTAGACTTCAGAGGACCAGGAGGCCTGCTGGAGTACAAAGGACATGGGCAGTTTGCAGTTCAGACAGACAAAAAGTCTCCTGCTGAGATAAAAGTTGCCACTACTGTGGGTCTGATAGCTGGAGGAACAGGCATCACCCCTATGCTACAGCTGGTGCGCGCCATCATGAAGGACCCCAGTGACAGCACCACCTGCAGCCTGCTGTATGCTAACCAGactgagaaggacatcctgcTGAGGGATGAGCTGGAGGAGGTCCAAGTCCGACACCCAGACCGCTTCAAGCTGTGGTTTACAGTGGACAGGGCACCCGAGGGCTGGGAGTACAGTGAGGGCTTCATCAACGCAGACATGATCCAGGAGCACTTGCCGGCCCCCAGTGACGACACCTTGGTGCTCATGTGCGGTCCGCCCCCCATGATCCAGTTTGCCTGCAACCCTAACCTGGACAAGTTGGCCTACCGGCAGAGTCAGCGCTTTGCCTACTAGTCTCCAGCCTAGGGACTCTCCTCCCAGCCACCCCCGGCCTGGGCATTCTCAATTCAACAAGGACATCAATTCAGCTGGAACTACTGCTTGAGAACCAGCATCTCTTTATAGAATATTCGGTTAAAACTATTGCAGAGTTCCGGGACCTAAACATAAACAAtaccggcacccaaaatgagtaacGGCTCCTATTTCAGTCCACTAGAAGCACTGAATCAGTCTACTGCCTAAACCCCCATCTGATAAGTGCAGACATGCCCTCTTATATATCAGGTTGATCATTAAATGCTCACTTGCAACCAAAGTCCTACCTTTGTATTATTGGCCTCCACTAAGCTCTGCCTCCATCCCCTGCTGATGGCTACAATTGATTGGGCCCTGTGTATTTTTAGGTGAGCTGTTGAGGCTTTGATTTATTATTGATGTTCTTACCCTTGCACGTTCTTCCTaagaacaggacagagagaacagaccctAAAGATAAAGCCACATACTGAACTGAATTACGCCCAGGGGTGCAGTGCTGAATATGAGAAGGCCGCCCAGGCAGCATTGCTTTAAATGCACACATGACAAATGATATGCACTTAAGTATTTCAGCTTCTGCAGAGATGCATTATACTGTATTTTGGCATCTGCTTTGAGTGttacaaatatatacagtgcccttTGTATTTACTGGGTTGTTGACAATTTTGTTGttattttggctctgtactccagaacTTTGAATTTGAAATgttacaatgactatgaggttaaagtgcagactgtcagctttaatgtgACTTTTTGCACTTTTTGTACATTGTCCTctcattttaggggaccaaaagtattgggacaaattcacttgtgtgtattaaagtagtcaaaagtttagtattttgtCCAATATTCACAGCAATCGATGATTAAATTAAGCTTGTGACTCTAAACATGTGTTGGAGTCATTTGCTGttggttttg

Function

NR:

description
NADH-cytochrome b5 reductase 1-like isoform X2

GO: NA

KEGG:

id description
K10534 NR; nitrate reductase (NAD(P)H)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569004.2 False 2025 mRNA 0.47 9 57042425 57050988
XM_036950255.1 True 1877 mRNA 0.46 8 57042426 57050988

Neighbor

gene id symbol gene type direction distance location
LOC110494181 rnpep coding upstream 175 57030146 ~ 57042250 (+)
inavab LOC106565419 coding upstream 15467 56978562 ~ 57026958 (+)
LOC110493225 LOC106565493 coding upstream 66589 56973422 ~ 56975836 (+)
syt6b LOC106565416 coding upstream 75551 56921695 ~ 56966874 (+)
LOC110494174 LOC106565412 coding upstream 171213 56863434 ~ 56871212 (+)
adipor1a LOC101268928 coding downstream 608 57051596 ~ 57060451 (+)
rabif LOC106565422 coding downstream 14056 57065044 ~ 57067062 (+)
LOC110494185 LOC106565423 coding downstream 22933 57073921 ~ 57105178 (+)
nelfcd nelfd coding downstream 54830 57105818 ~ 57111562 (+)
nramp-alpha nramp-alpha coding downstream 125463 57176451 ~ 57225686 (+)
G1466939 olfml3 non-coding upstream 69699 56969324 ~ 56972726 (+)
si:ch73-190f16.2 LOC106583347 non-coding upstream 210609 56816857 ~ 56831816 (+)
G1466863 LOC106583346 non-coding upstream 251346 56787434 ~ 56791079 (+)
G1466850 LOC106565409 non-coding upstream 270186 56768731 ~ 56772239 (+)
G1466997 NA non-coding downstream 11929 57062917 ~ 57063155 (+)
G1466998 NA non-coding downstream 12993 57063981 ~ 57064182 (+)
G1466999 NA non-coding downstream 13561 57064549 ~ 57064897 (+)
G1467007 NA non-coding downstream 16865 57067853 ~ 57068261 (+)
G1467009 NA non-coding downstream 18575 57069563 ~ 57070276 (+)
LOC110494160 LOC105017078 other upstream 459704 56575737 ~ 56584088 (+)
G1466224 gem other upstream 821479 56219242 ~ 56220946 (+)
LOC110494143 LOC106565389 other upstream 914944 56088149 ~ 56127481 (+)
G1466131 NA other upstream 1025812 56015577 ~ 56016613 (+)
G1466124 NA other upstream 1044251 55996648 ~ 55998347 (+)
G1467020 NA other downstream 66714 57117702 ~ 57118886 (+)
G1467030 NA other downstream 95525 57146488 ~ 57147741 (+)
G1467031 NA other downstream 98315 57149303 ~ 57150343 (+)
G1467159 LOC106565433 other downstream 427809 57478797 ~ 57554480 (+)
LOC110494206 LOC108254821 other downstream 447394 57498305 ~ 57548178 (+)

Expression


Co-expression Network