rabif (LOC106565422)


Basic Information

Item Value
gene id rabif
gene name LOC106565422
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 57065044 ~ 57067062 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569005.2
GTTTCCGAACGGAAGTTTCAGCGGGTGCACACTGTCCAGCAATGCTTGTTGTTTGATATAGCCGAGTGTTTTAAATACAATTTAGTTACATTATTTGTACTACCGTTTGGTAGTACTTTAGGCGTACTCTAGCCATTATTACTTATGGTTGTTAAGCCCAATGTACAGCATTAAGCCCAATGAAGTTCGCATTAGCcgatattagctagctagttgggtACTGTTTGCTGGTAAGGCAAGCTAGACGAATagttgcaaaaaaatatatagagcAGTAGTTAGAATATAGCTAACGATCTTAGCATTAGCTTTATAGTGTACTATAGTCACATAAGTTGCCTTCTATTCGCGTTTAACATGGACAACCACGAACAGTGCTCTCCCTCTGAAGGATGCGCCGACCGGTCTACGCTGGTGTCAGAGGATGGAAAGAATATCAAATCAGTTTTGTGCCAACGTTGTGGATCGAAGGTCCTCTGCCCAGGGGTGGCGGTGATTGCAGAGAAGGAGCTGTTCCTTCCCGCAATGAGGAAGAAGACCACTATCACCCAATCAGAGGGATCCGTGGATGGGGACAAACTGACTGCCCACTGGTTAGTCGATGATATGTACACCTTTGAGAATGTGGGCTTCACCAAGGACGTGGGGAGAATCAAGTACCTAATTTGTGCAGACTGTGAGATTGGACCCATTGGCTGGCACTGCCTGGATGACAAAAAGAGCTTCTATGTTGCATTGGAAAGAGTCAATCATGCCTAGTGTGGTCCATAGTGAGAAACTGAGGAAACATGAGAAGGGTGTACAATTTGGAACTGAAGGACAAGACAGACCAACACGAATGTTGGCCATGCGCAGTAGATTATCTTCTGGGTGTCGGCGGACAGTGTCGATTCAACATGTAGAATCGTTGGGAAATTAACAGAAAATGACGGCCAATGTTCTGTGGTCAGAGGCAATAGACTGGTCTCCCGCTGGGATAGGCGACATTGGTGTTGGTCTGTCTTGTCCGTAACTCTTTCCCCTTCTGGCTGGTGCTGGATGCTGTCTCTGTGTTATGACTCCTTAGTTCAGCAAGGCCAAGCTTTCACTTCTATCCCTTTTGTTCTCTACTGATAACAATGGTATTGATGTGGTTCTCTGGACACACATCTGTCTTTAAAATGGTTATTCAATCTAATATTCAATCAATATTCTGGTGTTATGCTTTGGTCTGAGGCTAACCCTACAGCCTCAGTTGAATTTAATTGTTTGTATAGGCTGAATTATTACTTTCTACTTCTGAAATATTACTACTAATACTTATTGCAGATGGTAATATGAAATTATGTGCAGCATTTTAACCAGTTAGTGTGCTTATCCACTTGGCACACCCTTCACCTTGCATGTTGAATAATGGGAGTGGTTGTATTTGATGAGTGTGCTCTAGGCATTTGTTGCTGATACATTTCCCTTCAAGTGTTCTGTCTGTTGATATACCACATTGGCTTTGAAGGCTGCTCTCTGCTGCCTTGTTTGGCTCTTCTATTGCCAGCTAACTCCAGTAGATCTCTACAGTACATGCTCATCATGTTCCGGCATTTATTCAGTTTCATCTGCATTAAGGACTGAATTACTCTTGGCTTGACTATGTGACCTAATGATCATGCATTTCACTTCTCTTGCTCTGCACCCAAGCATTGTTGATGCTCTTCTAAACCGTTCTTAACTCATTAAAATAAAACGTATCACTCA

Function

NR:

description
guanine nucleotide exchange factor MSS4-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
K19952 RABIF, MSS4, DSS4; guanine nucleotide exchange factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569005.2 True 1731 mRNA 0.43 2 57065044 57067062

Neighbor

gene id symbol gene type direction distance location
adipor1a LOC101268928 coding upstream 4593 57051596 ~ 57060451 (+)
LOC110494182 LOC106565421 coding upstream 14056 57042425 ~ 57050988 (+)
LOC110494181 rnpep coding upstream 22794 57030146 ~ 57042250 (+)
inavab LOC106565419 coding upstream 38086 56978562 ~ 57026958 (+)
LOC110493225 LOC106565493 coding upstream 89208 56973422 ~ 56975836 (+)
LOC110494185 LOC106565423 coding downstream 6859 57073921 ~ 57105178 (+)
nelfcd nelfd coding downstream 38756 57105818 ~ 57111562 (+)
nramp-alpha nramp-alpha coding downstream 109389 57176451 ~ 57225686 (+)
LOC110494189 LOC106565429 coding downstream 171198 57238260 ~ 57274001 (+)
LOC110494190 LOC106565431 coding downstream 208215 57275277 ~ 57304551 (+)
G1466999 NA non-coding upstream 147 57064549 ~ 57064897 (+)
G1466998 NA non-coding upstream 862 57063981 ~ 57064182 (+)
G1466997 NA non-coding upstream 1889 57062917 ~ 57063155 (+)
G1466939 olfml3 non-coding upstream 92318 56969324 ~ 56972726 (+)
G1467007 NA non-coding downstream 791 57067853 ~ 57068261 (+)
G1467009 NA non-coding downstream 2501 57069563 ~ 57070276 (+)
G1467001 LOC106565426 non-coding downstream 45955 57113017 ~ 57116744 (+)
G1467030 NA non-coding downstream 79426 57146488 ~ 57147741 (+)
G1467041 NA non-coding downstream 106487 57173549 ~ 57173965 (+)
LOC110494160 LOC105017078 other upstream 482323 56575737 ~ 56584088 (+)
G1466224 gem other upstream 844098 56219242 ~ 56220946 (+)
LOC110494143 LOC106565389 other upstream 937563 56088149 ~ 56127481 (+)
G1466131 NA other upstream 1048431 56015577 ~ 56016613 (+)
G1466124 NA other upstream 1066870 55996648 ~ 55998347 (+)
G1467020 NA other downstream 50640 57117702 ~ 57118886 (+)
G1467031 NA other downstream 82241 57149303 ~ 57150343 (+)
G1467159 LOC106565433 other downstream 411735 57478797 ~ 57554480 (+)
LOC110494206 LOC108254821 other downstream 431320 57498305 ~ 57548178 (+)

Expression


Co-expression Network