nelfcd (nelfd)


Basic Information

Item Value
gene id nelfcd
gene name nelfd
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 57105818 ~ 57111562 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569007.2
TAGTTATCCgacggatatatatatatatttaaactacccctttagctagctagcttacccgaggcaattgttttgttttcaaaaatATTATCGATACTTGCTTTAGTATAGCTTGCTGGGTGCTTCATATTGTAAAGCTACTCACACTCTCATCATCATGGACGAGGAATATTACGAAAGGAATATTGGAGACTGGGATGGTCCGGATGGCAATCAGGACGACTATGTTGAAGGGGAGAACGATGGGAAAGTTCAGGAGGACTGCCTACAGAAGTTCTCCAGCAGAGATTACATCATGGAGCCTGCTGTCTTCAACACCCTCAAAACATATTTCCAGGCTGGTGGCTCCCCTGAACATGTCATCCAGCTCCTGTCGGAGAACTACTCTGCCGTGGCACAGACTGTCAACCTGCTGGCAGAGTGGCTCATCCAGATGGGTGTAGAGCCTGCTCAGGTGCAGGAGCGGGTAGAGAATCACTTGAAAAGTCTCTTGATCAAGCACTTTGACCCCCAGAAGGCAGACTCCATTTTTActgtagagggagagACTCCTGCCTGGCTGGAACAGATGATCGCCCACACCACCTGGAGAGACCTTTTCTACAAGCTGGCCGAGGCCCACCCTGACTGTCTGATGCTCAACTTCACTGTCAAACTCATCTCAGATGCGGGCTACCAGGGGGAGATCACCAGTGTGTCAACAGCGTGCCAGCAGCTGGAGGTGTTCTCCAGGGTCCTAAGGACCTCTCTAGCCACGCtgctggatggaggagaggacaacCTAGAGAAGAACCTGCCAGAATTTGCTAAGATGGTGTGTCACGGGGAGCACACATACCTGTTTGCCCAGGCCATGATGTCCATCATGTCTCAGGAGGAGCAGGGTGGGTCGGCCATGCGCAGGATCGGCCAGGAAGTACAGAAGTCTGCACATCAACGGGGCCATGATGCCAGTCAGATTACTCTGGCATTGGGCACAGCAGCAGCCTACCCTCGAGCCTGCCAGGCCCTGGGCGCAATGCTGTCCAAAGGGGCACTCAACCCTGCCGACATCACTGTGCTCTTCAAGATGTTCAGCAGCATGGACCCACCTCCCGTAGAGCTGATCCGAGTGCCTGCGTTCCTCGACCTGTTCATGCAGTCGCTGTTCAAGCCGGGCTCAAAGATCAACCAGGACCATAAACACAAATACATTCACATCCTGGCCTATGCTGCCAGTGTGGTTGAAACATGGAAAAAGAACAAGCGAGTGAACATCAACAAGGACGAGCTTAAATCCACCTCCAAGGCCATTGAGACGGTCCATAACCTGTGTTGCAATGAGAATAAAGGAGCCACAGAACTGGTGGCTGAGCTCAGCACCCTGTACCAGTGCATCCGGTTCCCAGTTGTTGCCATGGGGGTACTGAAGTGGGTTGATTGGACGGTCTCTGAGCCCCGCTACTTCCAGCTCCAGACAGACCACACCCCTGTCCACCTGGCACTTCTGGACGAGATCAGCACCTGTCACCAGCTTCTGCACCCACAGGTCCTCCATCTACTGATCAAGCTCTTTGAGACCGAACACTCCCAGCTCGACGTCatggagcagATGGAACTGAAGAAGACCCTGTTGGACCGTATGGTCCACCTGTTGAGTCGAGGCTACGTGCTGCCTGTGGTCGGATACATCCGCAAGTGCCTGGAGAAGCTCAACACAGACATCTCTCTCATCCGCTACTTTGTAACGGAGGTGTTGGATGTGATTGCCCCTCCGTACACTTCAGACTTTGTCCAGCTGTTCCTGCCCATCCTGGAGAACGACAGCATCGCTGGCACAATACGCACAGAGGGAGAACACGATCCTGTGGCTGAGTTTATAGCTCACTGCAAATCCAACTTCATCATGATGAACTGAGAATGACGCTGGTGGGTCCACCTTGGATGAGGATGTAGTGGGAATACCAGGGAGGGGCAGAAGGCGTGACCTCGGTTATGAGCCAATCATACCTTGACGTGTTGTGTGGACTGGTGGAAGAGGAATAGAACAATTTTGAGGCAGACCATTTTCATATAGACTGACCTGCGATTTTGCGTTCTCTTCATTAACACATGACTTTGAGAATTAAAAGGATGTTGTAGTGTATCATTGCTTATCACAGTTAATAAGGGTCTGGAGGTTTGAGGATAACTTGTTTTACAGTGCAGCTCCATCATTGGTTTCACTGTTGTTTCCATTGGTATGTGCCAAGGTTTCAAAATCAATTTTCTGTTGCTTTTTATAAATGTTAAAATGACTGCTCAAAAGATAAATGTTAATTGAAAAGTTT
>XM_021569008.2
TAGTTATCCgacggatatatatatatatttaaactacccctttagctagctagcttacccgaggcaattgttttgttttcaaaaatATTATCGATACTTGCTTTAGTATAGCTTGCTGGGTGCTTCATATTGTAAAGCTACTCACACTCTCATCATCATGGACGAGGAATATTACGAAAGGAATATTGGAGACTGGGATGGTCCGGATGGCAATGACGACTATGTTGAAGGGGAGAACGATGGGAAAGTTCAGGAGGACTGCCTACAGAAGTTCTCCAGCAGAGATTACATCATGGAGCCTGCTGTCTTCAACACCCTCAAAACATATTTCCAGGCTGGTGGCTCCCCTGAACATGTCATCCAGCTCCTGTCGGAGAACTACTCTGCCGTGGCACAGACTGTCAACCTGCTGGCAGAGTGGCTCATCCAGATGGGTGTAGAGCCTGCTCAGGTGCAGGAGCGGGTAGAGAATCACTTGAAAAGTCTCTTGATCAAGCACTTTGACCCCCAGAAGGCAGACTCCATTTTTActgtagagggagagACTCCTGCCTGGCTGGAACAGATGATCGCCCACACCACCTGGAGAGACCTTTTCTACAAGCTGGCCGAGGCCCACCCTGACTGTCTGATGCTCAACTTCACTGTCAAACTCATCTCAGATGCGGGCTACCAGGGGGAGATCACCAGTGTGTCAACAGCGTGCCAGCAGCTGGAGGTGTTCTCCAGGGTCCTAAGGACCTCTCTAGCCACGCtgctggatggaggagaggacaacCTAGAGAAGAACCTGCCAGAATTTGCTAAGATGGTGTGTCACGGGGAGCACACATACCTGTTTGCCCAGGCCATGATGTCCATCATGTCTCAGGAGGAGCAGGGTGGGTCGGCCATGCGCAGGATCGGCCAGGAAGTACAGAAGTCTGCACATCAACGGGGCCATGATGCCAGTCAGATTACTCTGGCATTGGGCACAGCAGCAGCCTACCCTCGAGCCTGCCAGGCCCTGGGCGCAATGCTGTCCAAAGGGGCACTCAACCCTGCCGACATCACTGTGCTCTTCAAGATGTTCAGCAGCATGGACCCACCTCCCGTAGAGCTGATCCGAGTGCCTGCGTTCCTCGACCTGTTCATGCAGTCGCTGTTCAAGCCGGGCTCAAAGATCAACCAGGACCATAAACACAAATACATTCACATCCTGGCCTATGCTGCCAGTGTGGTTGAAACATGGAAAAAGAACAAGCGAGTGAACATCAACAAGGACGAGCTTAAATCCACCTCCAAGGCCATTGAGACGGTCCATAACCTGTGTTGCAATGAGAATAAAGGAGCCACAGAACTGGTGGCTGAGCTCAGCACCCTGTACCAGTGCATCCGGTTCCCAGTTGTTGCCATGGGGGTACTGAAGTGGGTTGATTGGACGGTCTCTGAGCCCCGCTACTTCCAGCTCCAGACAGACCACACCCCTGTCCACCTGGCACTTCTGGACGAGATCAGCACCTGTCACCAGCTTCTGCACCCACAGGTCCTCCATCTACTGATCAAGCTCTTTGAGACCGAACACTCCCAGCTCGACGTCatggagcagATGGAACTGAAGAAGACCCTGTTGGACCGTATGGTCCACCTGTTGAGTCGAGGCTACGTGCTGCCTGTGGTCGGATACATCCGCAAGTGCCTGGAGAAGCTCAACACAGACATCTCTCTCATCCGCTACTTTGTAACGGAGGTGTTGGATGTGATTGCCCCTCCGTACACTTCAGACTTTGTCCAGCTGTTCCTGCCCATCCTGGAGAACGACAGCATCGCTGGCACAATACGCACAGAGGGAGAACACGATCCTGTGGCTGAGTTTATAGCTCACTGCAAATCCAACTTCATCATGATGAACTGAGAATGACGCTGGTGGGTCCACCTTGGATGAGGATGTAGTGGGAATACCAGGGAGGGGCAGAAGGCGTGACCTCGGTTATGAGCCAATCATACCTTGACGTGTTGTGTGGACTGGTGGAAGAGGAATAGAACAATTTTGAGGCAGACCATTTTCATATAGACTGACCTGCGATTTTGCGTTCTCTTCATTAACACATGACTTTGAGAATTAAAAGGATGTTGTAGTGTATCATTGCTTATCACAGTTAATAAGGGTCTGGAGGTTTGAGGATAACTTGTTTTACAGTGCAGCTCCATCATTGGTTTCACTGTTGTTTCCATTGGTATGTGCCAAGGTTTCAAAATCAATTTTCTGTTGCTTTTTATAAATGTTAAAATGACTGCTCAAAAGATAAATGTTAATTGAAAAGTTT
>XM_021569010.2
acggatatatatatatatttaaactacccctttagctagctagcttacccgaggcaattgttttgttttcaaaaatATTATCGATACTTGCTTTAGTATAGCTTGCTGGGTGCTTCATATTGTAAAGCTACTCACACTCTCATCATCATGGACGAGGAATATTACGAAAGGAATATTGGAGACTGGGATGGTCCGGATGGCAATACACATCGCAAATGTATATGGTGATCGCTACAATCTTAGGATGTTCCTTCCTTGGCTGAAGTGATGTGACTTCCATCTAGCAGGACGACTATGTTGAAGGGGAGAACGATGGGAAAGTTCAGGAGGACTGCCTACAGAAGTTCTCCAGCAGAGATTACATCATGGAGCCTGCTGTCTTCAACACCCTCAAAACATATTTCCAGGCTGGTGGCTCCCCTGAACATGTCATCCAGCTCCTGTCGGAGAACTACTCTGCCGTGGCACAGACTGTCAACCTGCTGGCAGAGTGGCTCATCCAGATGGGTGTAGAGCCTGCTCAGGTGCAGGAGCGGGTAGAGAATCACTTGAAAAGTCTCTTGATCAAGCACTTTGACCCCCAGAAGGCAGACTCCATTTTTActgtagagggagagACTCCTGCCTGGCTGGAACAGATGATCGCCCACACCACCTGGAGAGACCTTTTCTACAAGCTGGCCGAGGCCCACCCTGACTGTCTGATGCTCAACTTCACTGTCAAACTCATCTCAGATGCGGGCTACCAGGGGGAGATCACCAGTGTGTCAACAGCGTGCCAGCAGCTGGAGGTGTTCTCCAGGGTCCTAAGGACCTCTCTAGCCACGCtgctggatggaggagaggacaacCTAGAGAAGAACCTGCCAGAATTTGCTAAGATGGTGTGTCACGGGGAGCACACATACCTGTTTGCCCAGGCCATGATGTCCATCATGTCTCAGGAGGAGCAGGGTGGGTCGGCCATGCGCAGGATCGGCCAGGAAGTACAGAAGTCTGCACATCAACGGGGCCATGATGCCAGTCAGATTACTCTGGCATTGGGCACAGCAGCAGCCTACCCTCGAGCCTGCCAGGCCCTGGGCGCAATGCTGTCCAAAGGGGCACTCAACCCTGCCGACATCACTGTGCTCTTCAAGATGTTCAGCAGCATGGACCCACCTCCCGTAGAGCTGATCCGAGTGCCTGCGTTCCTCGACCTGTTCATGCAGTCGCTGTTCAAGCCGGGCTCAAAGATCAACCAGGACCATAAACACAAATACATTCACATCCTGGCCTATGCTGCCAGTGTGGTTGAAACATGGAAAAAGAACAAGCGAGTGAACATCAACAAGGACGAGCTTAAATCCACCTCCAAGGCCATTGAGACGGTCCATAACCTGTGTTGCAATGAGAATAAAGGAGCCACAGAACTGGTGGCTGAGCTCAGCACCCTGTACCAGTGCATCCGGTTCCCAGTTGTTGCCATGGGGGTACTGAAGTGGGTTGATTGGACGGTCTCTGAGCCCCGCTACTTCCAGCTCCAGACAGACCACACCCCTGTCCACCTGGCACTTCTGGACGAGATCAGCACCTGTCACCAGCTTCTGCACCCACAGGTCCTCCATCTACTGATCAAGCTCTTTGAGACCGAACACTCCCAGCTCGACGTCatggagcagATGGAACTGAAGAAGACCCTGTTGGACCGTATGGTCCACCTGTTGAGTCGAGGCTACGTGCTGCCTGTGGTCGGATACATCCGCAAGTGCCTGGAGAAGCTCAACACAGACATCTCTCTCATCCGCTACTTTGTAACGGAGGTGTTGGATGTGATTGCCCCTCCGTACACTTCAGACTTTGTCCAGCTGTTCCTGCCCATCCTGGAGAACGACAGCATCGCTGGCACAATACGCACAGAGGGAGAACACGATCCTGTGGCTGAGTTTATAGCTCACTGCAAATCCAACTTCATCATGATGAACTGAGAATGACGCTGGTGGGTCCACCTTGGATGAGGATGTAGTGGGAATACCAGGGAGGGGCAGAAGGCGTGACCTCGGTTATGAGCCAATCATACCTTGACGTGTTGTGTGGACTGGTGGAAGAGGAATAGAACAATTTTGAGGCAGACCATTTTCATATAGACTGACCTGCGATTTTGCGTTCTCTTCATTAACACATGACTTTGAGAATTAAAAGGATGTTGTAGTGTATCATTGCTTATCACAGTTAATAAGGGTCTGGAGGTTTGAGGATAACTTGTTTTACAGTGCAGCTCCATCATTGGTTTCACTGTTGTTTCCATTGGTATGTGCCAAGGTTTCAAAATCAATTTTCTGTTGCTTTTTATAAATGTTAAAATGACTGCTCAAAAGATAAATGTTAATTGAAAAGTTT

Function

symbol description
nelfd negative elongation factor C/D

NR:

description
Negative elongation factor D

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K15181 TH1L, NELFD; negative elongation factor C/D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569007.2 False 2309 mRNA 0.50 15 57105818 57111562
XM_021569008.2 False 2306 mRNA 0.50 15 57105818 57111562
XM_021569010.2 True 2379 mRNA 0.50 15 57105828 57111562

Neighbor

gene id symbol gene type direction distance location
LOC110494185 LOC106565423 coding upstream 640 57073921 ~ 57105178 (+)
rabif LOC106565422 coding upstream 38756 57065044 ~ 57067062 (+)
adipor1a LOC101268928 coding upstream 45367 57051596 ~ 57060451 (+)
LOC110494182 LOC106565421 coding upstream 54830 57042425 ~ 57050988 (+)
LOC110494181 rnpep coding upstream 63568 57030146 ~ 57042250 (+)
nramp-alpha nramp-alpha coding downstream 64889 57176451 ~ 57225686 (+)
LOC110494189 LOC106565429 coding downstream 126698 57238260 ~ 57274001 (+)
LOC110494190 LOC106565431 coding downstream 163715 57275277 ~ 57304551 (+)
tegt LOC100196653 coding downstream 194242 57305804 ~ 57329727 (+)
LOC110493228 LOC106583273 coding downstream 357191 57468753 ~ 57474567 (+)
G1467009 NA non-coding upstream 35542 57069563 ~ 57070276 (+)
G1467007 NA non-coding upstream 37557 57067853 ~ 57068261 (+)
G1466999 NA non-coding upstream 40921 57064549 ~ 57064897 (+)
G1466998 NA non-coding upstream 41636 57063981 ~ 57064182 (+)
G1466997 NA non-coding upstream 42663 57062917 ~ 57063155 (+)
G1467001 LOC106565426 non-coding downstream 1455 57113017 ~ 57116744 (+)
G1467030 NA non-coding downstream 34926 57146488 ~ 57147741 (+)
G1467041 NA non-coding downstream 61987 57173549 ~ 57173965 (+)
G1467054 NA non-coding downstream 82912 57194474 ~ 57212587 (+)
G1467113 NA non-coding downstream 227879 57339441 ~ 57340388 (+)
LOC110494160 LOC105017078 other upstream 523097 56575737 ~ 56584088 (+)
G1466224 gem other upstream 884872 56219242 ~ 56220946 (+)
LOC110494143 LOC106565389 other upstream 978337 56088149 ~ 56127481 (+)
G1466131 NA other upstream 1089205 56015577 ~ 56016613 (+)
G1466124 NA other upstream 1107644 55996648 ~ 55998347 (+)
G1467020 NA other downstream 6140 57117702 ~ 57118886 (+)
G1467031 NA other downstream 37741 57149303 ~ 57150343 (+)
G1467159 LOC106565433 other downstream 367235 57478797 ~ 57554480 (+)
LOC110494206 LOC108254821 other downstream 386820 57498305 ~ 57548178 (+)

Expression


Co-expression Network