stx16 (LOC106565427)


Basic Information

Item Value
gene id stx16
gene name LOC106565427
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 57132997 ~ 57145296 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569013.2
tggtgactgtgctgcttgcaacaatttaattacgtttttttGACGACATTTAGTGACAGCGGCCCTATTCAACATTGgtaaattcgtcagttattctgcgctctagcACACTCGGACGAGAGAGCCTGAGTGAATGTACGAACGCACCCGTTCCACGTAGCTAGAGAAGGCCGTTTTTTTTACCACCGACCCGTTCTATCATTTCCACTTTTCATTGAAAACAAACCATATCCGTCGTATTTTATGGTTTTATTTATGCATTTCGTGAAAGCTACAGATAACAAAGTATATGTTATTGTGAAGATAGAAAACGGAAGAACCCCTCGATTAGCCGGTCGGCGAGTGTGCCTGCTGTTTTGCTGGCTAGCTCACGTTAGCTAACTTTCCTTGTATTGTAACTTACTAgtaagttaacgttagctagctaggttctAGTCGTTGTTATTTGTTAGCTGTACATCCTTCGTGTGTAAATTAATCATGGCGACTAGGCGCCTGACCGATGCCTTCTTATTAATGCGGAACAATGCCATCCAAAATCGGCAGATATTGGCTGAGCAAGAGCTTGATGAGTTGGCTGATGACCGCATGGCCTTGGTCTCAGGGATCAGTCTGGACCCAGAAGCTGCCGTCGGAGTCACCAAGAGACTGCCGCCCAAGTGGGTAGATGGGGTCGTTGAGATTCAGTATGAAATCACACGGGTCCGGCAGAAAATGAAGGAGCTGGCCGCCCTCCATGACAAGCACATGAACCGCCCTACCCTCGATGACAGCAGTGAAGAGGAGCATGCCATAGAGATCACCACTCAGGAGATCACACAGATGTTCCACCGGTGTCAGCGTGCAGTGACAGGTCTGCAGACTCGCTGTGGCCACTGcacagagcaggaggagaggctGCTGAGAAATGTGGTGTCCTCGTTGGCAGGGAGCCTGCAAGAGCTGTCCACCAACTTCAGACACACGCAGTCCAGCTATCTGAAACGCATGAAGAATCGTGAGGAGAGATCCAAACACTTTTTTGACTCTGGTCCTCTAATGGAGGAGGATGAAGACCTGGCACTATATGAAATGGGGTTTACAGATGACCAGCTGGTCCTGGTAGAGCAGAACACAGTGATGGTGGAGGAACGTGAGAGAGAGGTCCGACAGATAGTCCAGTCCATCACCGACTTGAATGAGATTTTCCGAGACCTGGCAGGAATGGTGGTGGAACAGGGCACAGTACTTGACAGAATTGACTTCAATGTGGAGCAATCGTGTGTCAAAACAGACGAGGGGTTAAAACAGTTACAAAAGGCTGAACAGTATCAGAAGAAAAACCGAAAGATGCTGGTTATTTTAATTCTTACTGTTATAGTTGTTGTTCTAATACTTATACTATTTGGGACCAAGTTCTAGTGATGCATTCCTTTGCTTttggtatgtctgtgtgtatgtttggtgtGCATCTATGTGTGCTTGTGTGAGGAGTGTCTGTCAGTATCGTTTAAAGTACAATCTGTCCAACTTTCCAATCACCCTTCCCGAATCTCTCTCTGTATGGCTCATGAAGATGTATTGAATGCATGATCCCTAAGAGAGGACAGCCAGGGAGAGTTCCTATTTCACTTTTCAACTGGCCTGCACACATGGCCACTGTCCGCCCCAATACCCTCTTAAACATGACCGTACCGTACCCTACATCTGTCATGGTTACtgctgcaaacaaacacagaaaaaAACACTCCTTAAATTCACTTGTGGAAGACTACTGATTAATTGTCATGGCCACACATTTAGCTTGTTTTTCAAGCAAATAAGTGGTTTGCTTGTGTGAGCATATCATatgtccagttttattgtaagcTATAGCTGCTGTAAGCCCTGCCCTCCAATGTCTGTTTTCAAGAGAAGAATCCTGACAACTCAACTAGATGAATATTGAATGTCTATGAACAAGGAACATTTGTGTCTCGTGGCGATTCTACACGACCCTGGTCATTTTTGCATTTGATTTTTCACTTTATCATGGTTACTTTTTTAGAGAGAGAAATGACAAGGTTTGCAATCAGTGGCTGAAAAACTACAATAGCTAATTCATTGAATACCAAAAACAACCTTTTGGGTTAAGAGCTGTAGTTGACCATCCTAAATTCATGTATCTACCAAGAGTAGTGTCTTTAATGAATTTGCACATTTAGATCACTTGATGACTGCTTTCTTTTGTTTCATGACCTTCTATTGTCTGATATCGCTAACTAACACATCAGTTCAGTTTGTTCTTGTCTTTTATCCCTCACAGTTTGCACATATCGAAAGACTGATGGGTTTGGTTTCATGGCTGTGAAACggtctcctgtataatatgaaattataattatttattttgaatTTAAATTGTATAAAAGTTCAACGTTTTTTTGTCTAATATGACAAAGATGTATTGAGTAGCCTACATTGTGTCTTTGGCCTAAAGTATGGGGATGAAAATTGTGATCAAGCCTTGATCTCAGAAATGACTTTGCCCATTCCACTACAAAATCAATTAAAAATTGAGTACCTTTTTCTCACACTA
>XM_021569011.2
ttggtgactgtgctgcttgcaacaatttaattacgtttttttGACGACATTTAGTGACAGCGGCCCTATTCAACATTGgtaaattcgtcagttattctgcgctctagcACACTCGGACGAGAGAGCCTGAGTGAATGTACGAACGCACCCGTTCCACGTAGCTAGAGAAGGCCGTTTTTTTTACCACCGACCCGTTCTATCATTTCCACTTTTCATTGAAAACAAACCATATCCGTCGTATTTTATGGTTTTATTTATGCATTTCGTGAAAGCTACAGATAACAAAGTATATGTTATTGTGAAGATAGAAAACGGAAGAACCCCTCGATTAGCCGGTCGGCGAGTGTGCCTGCTGTTTTGCTGGCTAGCTCACGTTAGCTAACTTTCCTTGTATTGTAACTTACTAgtaagttaacgttagctagctaggttctAGTCGTTGTTATTTGTTAGCTGTACATCCTTCGTGTGTAAATTAATCATGGCGACTAGGCGCCTGACCGATGCCTTCTTATTAATGCGGAACAATGCCATCCAAAATCGGCAGATATTGGCTGAGCAAGTGAGTACATACGACCCCCGTCGTACTCTGAGTACACGTAGCAATGCTGCGGAGCTTGATGAGTTGGCTGATGACCGCATGGCCTTGGTCTCAGGGATCAGTCTGGACCCAGAAGCTGCCGTCGGAGTCACCAAGAGACTGCCGCCCAAGTGGGTAGATGGGGTCGTTGAGATTCAGTATGAAATCACACGGGTCCGGCAGAAAATGAAGGAGCTGGCCGCCCTCCATGACAAGCACATGAACCGCCCTACCCTCGATGACAGCAGTGAAGAGGAGCATGCCATAGAGATCACCACTCAGGAGATCACACAGATGTTCCACCGGTGTCAGCGTGCAGTGACAGGTCTGCAGACTCGCTGTGGCCACTGcacagagcaggaggagaggctGCTGAGAAATGTGGTGTCCTCGTTGGCAGGGAGCCTGCAAGAGCTGTCCACCAACTTCAGACACACGCAGTCCAGCTATCTGAAACGCATGAAGAATCGTGAGGAGAGATCCAAACACTTTTTTGACTCTGGTCCTCTAATGGAGGAGGATGAAGACCTGGCACTATATGAAATGGGGTTTACAGATGACCAGCTGGTCCTGGTAGAGCAGAACACAGTGATGGTGGAGGAACGTGAGAGAGAGGTCCGACAGATAGTCCAGTCCATCACCGACTTGAATGAGATTTTCCGAGACCTGGCAGGAATGGTGGTGGAACAGGGCACAGTACTTGACAGAATTGACTTCAATGTGGAGCAATCGTGTGTCAAAACAGACGAGGGGTTAAAACAGTTACAAAAGGCTGAACAGTATCAGAAGAAAAACCGAAAGATGCTGGTTATTTTAATTCTTACTGTTATAGTTGTTGTTCTAATACTTATACTATTTGGGACCAAGTTCTAGTGATGCATTCCTTTGCTTttggtatgtctgtgtgtatgtttggtgtGCATCTATGTGTGCTTGTGTGAGGAGTGTCTGTCAGTATCGTTTAAAGTACAATCTGTCCAACTTTCCAATCACCCTTCCCGAATCTCTCTCTGTATGGCTCATGAAGATGTATTGAATGCATGATCCCTAAGAGAGGACAGCCAGGGAGAGTTCCTATTTCACTTTTCAACTGGCCTGCACACATGGCCACTGTCCGCCCCAATACCCTCTTAAACATGACCGTACCGTACCCTACATCTGTCATGGTTACtgctgcaaacaaacacagaaaaaAACACTCCTTAAATTCACTTGTGGAAGACTACTGATTAATTGTCATGGCCACACATTTAGCTTGTTTTTCAAGCAAATAAGTGGTTTGCTTGTGTGAGCATATCATatgtccagttttattgtaagcTATAGCTGCTGTAAGCCCTGCCCTCCAATGTCTGTTTTCAAGAGAAGAATCCTGACAACTCAACTAGATGAATATTGAATGTCTATGAACAAGGAACATTTGTGTCTCGTGGCGATTCTACACGACCCTGGTCATTTTTGCATTTGATTTTTCACTTTATCATGGTTACTTTTTTAGAGAGAGAAATGACAAGGTTTGCAATCAGTGGCTGAAAAACTACAATAGCTAATTCATTGAATACCAAAAACAACCTTTTGGGTTAAGAGCTGTAGTTGACCATCCTAAATTCATGTATCTACCAAGAGTAGTGTCTTTAATGAATTTGCACATTTAGATCACTTGATGACTGCTTTCTTTTGTTTCATGACCTTCTATTGTCTGATATCGCTAACTAACACATCAGTTCAGTTTGTTCTTGTCTTTTATCCCTCACAGTTTGCACATATCGAAAGACTGATGGGTTTGGTTTCATGGCTGTGAAACggtctcctgtataatatgaaattataattatttattttgaatTTAAATTGTATAAAAGTTCAACGTTTTTTTGTCTAATATGACAAAGATGTATTGAGTAGCCTACATTGTGTCTTTGGCCTAAAGTATGGGGATGAAAATTGTGATCAAGCCTTGATCTCAGAAATGACTTTGCCCATTCCACTACAAAATCAATTAAAAATTGAGTACCTTTTTCTCACACTA
>XM_021569012.2
gttggtgactgtgctgcttgcaacaatttaattacgtttttttGACGACATTTAGTGACAGCGGCCCTATTCAACATTGgtaaattcgtcagttattctgcgctctagcACACTCGGACGAGAGAGCCTGAGTGAATGTACGAACGCACCCGTTCCACGTAGCTAGAGAAGGCCGTTTTTTTTACCACCGACCCGTTCTATCATTTCCACTTTTCATTGAAAACAAACCATATCCGTCGTATTTTATGGTTTTATTTATGCATTTCGTGAAAGCTACAGATAACAAAGTATATGTTATTGTGAAGATAGAAAACGGAAGAACCCCTCGATTAGCCGGTCGGCGAGTGTGCCTGCTGTTTTGCTGGCTAGCTCACGTTAGCTAACTTTCCTTGTATTGTAACTTACTAgtaagttaacgttagctagctaggttctAGTCGTTGTTATTTGTTAGCTGTACATCCTTCGTGTGTAAATTAATCATGGCGACTAGGCGCCTGACCGATGCCTTCTTATTAATGCGGAACAATGCCATCCAAAATCGGCAGATATTGGCTGAGCAAGTGAGTACATACGACCCCCGTCGTACTCTGAGTACACGTAGCAATGCTGCGTTGGCTGATGACCGCATGGCCTTGGTCTCAGGGATCAGTCTGGACCCAGAAGCTGCCGTCGGAGTCACCAAGAGACTGCCGCCCAAGTGGGTAGATGGGGTCGTTGAGATTCAGTATGAAATCACACGGGTCCGGCAGAAAATGAAGGAGCTGGCCGCCCTCCATGACAAGCACATGAACCGCCCTACCCTCGATGACAGCAGTGAAGAGGAGCATGCCATAGAGATCACCACTCAGGAGATCACACAGATGTTCCACCGGTGTCAGCGTGCAGTGACAGGTCTGCAGACTCGCTGTGGCCACTGcacagagcaggaggagaggctGCTGAGAAATGTGGTGTCCTCGTTGGCAGGGAGCCTGCAAGAGCTGTCCACCAACTTCAGACACACGCAGTCCAGCTATCTGAAACGCATGAAGAATCGTGAGGAGAGATCCAAACACTTTTTTGACTCTGGTCCTCTAATGGAGGAGGATGAAGACCTGGCACTATATGAAATGGGGTTTACAGATGACCAGCTGGTCCTGGTAGAGCAGAACACAGTGATGGTGGAGGAACGTGAGAGAGAGGTCCGACAGATAGTCCAGTCCATCACCGACTTGAATGAGATTTTCCGAGACCTGGCAGGAATGGTGGTGGAACAGGGCACAGTACTTGACAGAATTGACTTCAATGTGGAGCAATCGTGTGTCAAAACAGACGAGGGGTTAAAACAGTTACAAAAGGCTGAACAGTATCAGAAGAAAAACCGAAAGATGCTGGTTATTTTAATTCTTACTGTTATAGTTGTTGTTCTAATACTTATACTATTTGGGACCAAGTTCTAGTGATGCATTCCTTTGCTTttggtatgtctgtgtgtatgtttggtgtGCATCTATGTGTGCTTGTGTGAGGAGTGTCTGTCAGTATCGTTTAAAGTACAATCTGTCCAACTTTCCAATCACCCTTCCCGAATCTCTCTCTGTATGGCTCATGAAGATGTATTGAATGCATGATCCCTAAGAGAGGACAGCCAGGGAGAGTTCCTATTTCACTTTTCAACTGGCCTGCACACATGGCCACTGTCCGCCCCAATACCCTCTTAAACATGACCGTACCGTACCCTACATCTGTCATGGTTACtgctgcaaacaaacacagaaaaaAACACTCCTTAAATTCACTTGTGGAAGACTACTGATTAATTGTCATGGCCACACATTTAGCTTGTTTTTCAAGCAAATAAGTGGTTTGCTTGTGTGAGCATATCATatgtccagttttattgtaagcTATAGCTGCTGTAAGCCCTGCCCTCCAATGTCTGTTTTCAAGAGAAGAATCCTGACAACTCAACTAGATGAATATTGAATGTCTATGAACAAGGAACATTTGTGTCTCGTGGCGATTCTACACGACCCTGGTCATTTTTGCATTTGATTTTTCACTTTATCATGGTTACTTTTTTAGAGAGAGAAATGACAAGGTTTGCAATCAGTGGCTGAAAAACTACAATAGCTAATTCATTGAATACCAAAAACAACCTTTTGGGTTAAGAGCTGTAGTTGACCATCCTAAATTCATGTATCTACCAAGAGTAGTGTCTTTAATGAATTTGCACATTTAGATCACTTGATGACTGCTTTCTTTTGTTTCATGACCTTCTATTGTCTGATATCGCTAACTAACACATCAGTTCAGTTTGTTCTTGTCTTTTATCCCTCACAGTTTGCACATATCGAAAGACTGATGGGTTTGGTTTCATGGCTGTGAAACggtctcctgtataatatgaaattataattatttattttgaatTTAAATTGTATAAAAGTTCAACGTTTTTTTGTCTAATATGACAAAGATGTATTGAGTAGCCTACATTGTGTCTTTGGCCTAAAGTATGGGGATGAAAATTGTGATCAAGCCTTGATCTCAGAAATGACTTTGCCCATTCCACTACAAAATCAATTAAAAATTGAGTACCTTTTTCTCACACTA

Function

NR:

description
syntaxin-16-like isoform X2

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K08489 STX16; syntaxin 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569013.2 False 2557 mRNA 0.43 9 57132997 57145294
XM_021569011.2 False 2609 mRNA 0.43 9 57132997 57145295
XM_021569012.2 True 2598 mRNA 0.43 8 57132997 57145296
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110493226 npepl1 coding downstream 10290 57121443 ~ 57122707 (-)
cathy cathy coding downstream 16287 57113006 ~ 57116710 (-)
olfml3b olfml3 coding downstream 160365 56966942 ~ 56972632 (-)
LOC110493224 LOC106565414 coding downstream 212223 56900273 ~ 56920774 (-)
LOC110494176 LOC106565415 coding downstream 243285 56886866 ~ 56889712 (-)
hig1a hig1a coding upstream 84144 57229440 ~ 57233433 (-)
LOC118940479 NA coding upstream 148940 57294236 ~ 57308483 (-)
LOC110494192 LOC106565510 coding upstream 184825 57330121 ~ 57332994 (-)
LOC110494193 LOC106565432 coding upstream 212082 57357378 ~ 57460651 (-)
si:ch1073-456m8.1 LOC106565433 coding upstream 335168 57480464 ~ 57492399 (-)
G1467714 NA non-coding downstream 21023 57111128 ~ 57111974 (-)
G1467785 NA non-coding downstream 104022 57028504 ~ 57028975 (-)
LOC110494175 LOC106583348 non-coding downstream 260016 56827756 ~ 56883416 (-)
G1467620 NA non-coding downstream 334365 56770049 ~ 56798632 (-)
LOC110494170 LOC106565409 non-coding downstream 380599 56747847 ~ 56786071 (-)
G1467816 NA non-coding upstream 2015 57147311 ~ 57148712 (-)
G1467823 NA non-coding upstream 16354 57161650 ~ 57161886 (-)
G1467830 NA non-coding upstream 28252 57173548 ~ 57173797 (-)
G1467831 NA non-coding upstream 29212 57174508 ~ 57174798 (-)
G1467898 NA non-coding upstream 160546 57305842 ~ 57310683 (-)
elmo2 LOC106565399 other downstream 632672 56494856 ~ 56530610 (-)
dnai1.2 dnai1 other downstream 965660 56130667 ~ 56167366 (-)
LOC110494137 LOC106565384 other downstream 1162283 55954473 ~ 55971001 (-)
G1464954 NA other downstream 2405102 54726796 ~ 54727895 (-)
G1464950 ccdc36 other downstream 2415507 54716104 ~ 54717490 (-)
G1470802 NA other upstream 2529245 59674541 ~ 59676694 (-)
LOC110494253 LOC106565590 other upstream 2845679 59990975 ~ 59999740 (-)
LOC110494257 LOC106565586 other upstream 2961373 60104033 ~ 60110249 (-)
G1471219 srgap3 other upstream 3230450 60375633 ~ 60376864 (-)

Expression

stx16(LOC106565427) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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stx16(LOC106565427) Expression in each Bioproject

Bar chart with 21 bars.
stx16(LOC106565427) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network