LOC110494189 (LOC106565429)


Basic Information

Item Value
gene id LOC110494189
gene name LOC106565429
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 57238260 ~ 57274001 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569015.2
CCCCAAAATCCTCagaagagcaaaaacaaagcgtCATCCAATATACTAAAACAATCATTTATTAATCAGACATATACACATTGTTCATTTGGACCAAGATAAGGAATTATTTGACCAACATATTTTCAGTTTTCTTATAGTGGATTATGATCACTCAAGGTTGTTTATCAGTATTAAGGGGGACTTGAAACCGCACCCTGCCCCATTTCCTCGGTTGTTTTGCTTTTTTCGCCTGGATTCTCCATGTTGGAGTATTAGCGAGGTCTTTCctagtgttagctagctatcagAGGGGACCGCAGCGTTACACTAATACACTTCATGTTGAACGCATGAAGCACACTGCCTAGCTTGAACTAGGAAAGATAGCGGAAGCTATAATTGATACAAGAAAAACCAAGAAGCTGTTTTTATTGGAATATTTTCGGATACCAAACGCAACGGGTTGGTAAACGTGATTGCTAACCAGCTAGCTGAATGTTGAAAGTACCTGCAAATTGGGGTAACGGATTGGACTTTGAGGGGCTGTGCATTTGTTAGATGGAAAGTTCTATTATCACTCAAGTGCAGAAAGAAGATAGTCAACTGCCGTCCAAAACAGGCCAGGTGAACAAATCTTCCCCAAAGAAGCCTCGGAGCCGAAATATCTTCAAAGCGCTCTTCTGTTGCCTCCGAGCACAGGATGTCTCTCAGCCTCCACCCCCTGCCCAGGATACCTTACTTCCTCCTGAGGACAATGGGACGATCGCCAAGGTCCCAGAGACCAGTCTACTGCCAGAGGTAACCCCTGAGGATGAGGGCAAGATCTGTGTGGTCATTGACCTGGACGAAACGCTGGTGCACAGCTCattcaagCCCATCAGTAATGCTGACTTCATTGTACCTGTGGAGATTGAAGGAACAACACACCAGGTTTTCGTCCTGAAGAGGCCACATGTCGACGAGTTCCTCCAAAGGATGGGAGAGCTGTTTGAGTGTGTTCTCTTCACTGCAAGTCTTGCAAAGTATGCAGACCCAGTGACCGACCTTCTAGATCAGTGTGGTGTGTTCCGGACGCGTCTCTTTCGGGAGTCCTGTGTGTTCCATCAGGGCTGCTACGTCAAGGACCTGAGCCGCCTGGGCCGCCAGCTCAACAAGACCCTTATCCTGGACAACTCCCCCGCCTCCTACATCTTCCACCCTGAGAATGCTGTGCCTGTGGTGTCCTGGTTTGACGACCTGGAGGACACAGAGCTGCTGAGCCTCCTGCCTGTCTTTGAAGAGCTGAGTGAGGCGGAAGACGTCTATGCCAAACTGCAGCAGCTACGGGCCCCCTGACACGACACACCCCCTCTTATAAGCCAGAATCTCCCCCTCCCAGCCAGACCACACCCATCAACCGACGGAAAAAGACCAAACCTtacctacatacacacactgtgtgCGGTGTTAGTATCCTAGACACACACTCTGTGTTTGTTTGGCCCCTGAACTGTGTGTCTGGACGGCTGTCCACTTTTCCTACTATTTTCCTCCTCAGTATGTTAGCTGGTGCTGCAAAACTGCTGTTCTGGAAAAAATCCAACAAACACAATGCAAAGTGGCTCACTCTTTTCTCATTTTAAATGTACTCAAACGCATACTAGTACTCCAATCATTTAAACTGACTGGCCAGATCTTTGTTTCTCCAAAAACGAGACTTAGATTTTATAGCACTAATTGCGACACAAAACAATTGACTGTACACACAACATCTCTGCTTCGACAATAATCTCTGTACAAACACTTTGAAGGGGGACTCTAAAGCATTGCAAGGAATCTACAAAAACCACATAGTGATTTTAATTTCCATTTCGTAGTACAACGGCCTGTATAAAGGCGTTTTTTAAGGAAGTTTCTCCTGAATGGATTGAGTCCTTCAGGAAATTAATTTTAAAAGCTAAACCCAGTGGTCTTTCTGATCCAAGGCCAGCATGACATGACATTACAGTGCATGACATGACCTCATTTGAGCAGACCTTACATGGGGAGCAAGGGATCTCCATCTTTGTGCCTTCTGAAAAGAAAAATATATTAATTCTGTTTTGGTTTTGTTTTTGAAGTAAGAAAAAATTGCGTTCTTTCCAGAAAATAGTTCTTTTTCAATTTAGGTTTTTCTATACATTTTTGAGATGTCTTTTAAATGTTTGATATGGTAAGAAGTGTAGATGACTTTTGTAATGTCTTGGATGTTGAGGAAGAACAGCCATACGTTAACAGCCTCTGTGTATGTTGTATTTACATGAAATCCTCCATTCTCATTAGCTGAAGATAACCTAATCCTCGGCCAATTGGGACCATTACAAACCAAGGGTCACACCATTGTGTAAAGGCAGGGCTGTAACATAAACCCTGCCTCTTTATGCAGATTCACCCTGAGATGCATCAGGTACAGGACACTTGAACTGGTTTCCCAAAATTTTTGGCACCCCCTTAAAAAATGCCCTTTAAATGAACAGACTAATTTAGACTTTAAAGTTCGGTAGCAAATTTGGAGTGATTCTCTGCTGGTGTATAGTCTGCTAAGGATGCCATATTGGTTAAACCGAGGCCTTTTTGTTACATTTTGTGTCAAGCCTTCTGGGTGCCATATTTGGGTCGCGTGAGGGACTTGTGATAAGTAGGCTGCTAAGAGTGAACACAATGCACACTAGTTTACCCCCTACCGGTTGCCCTTTATCCATAGTTTGCCAAGTCATTTCCACTCAACTTTTACTATTTTTAAATGTATCCTATTTAAGGTAAGATATTTcggtttgtaaaaaaaaaaaaaagacaatactGAGAAGTAAAAGTATGTGTTTTACAAATTCTCTGCGTTATTGCCTGTTCTAGAAGTTCTACAGTACTCACACTGACATATCTTAGGTGTTGTACACATTGTGGGGTGGCAGTGGTTTTGTGGTGGCAAAATATGGATTGATTTAGCAAGATATGTTCTATTGCTCAAATTGTAACTGTAAGCACACACAGGCATGCCCAATCCTGACTAGTCACTGTATCCCAAAGAGATTTGTTTTGTGGTTGTTTTATTCACAAGATAAAGCACCGCCTTATACTATTACACTTTATGAAGTGCCTACGGTTTCTTTCTGCGTTGAAAGCTTTAGAATAAAACATCAAGGGTCTCCATCATCCCCATTTTTCATTTTAGAATTTTACAACTGATAACCTGTTTAGTGTTGGTCGGAAATTGAGTAATCCACAAATCGCTCTTTGCCAAGTGATCCTACTCCGCTGTTTCATTGGGATTCAAAGAAAGGGCAGTGTGTTATAATGTTGTGGACCCCACATCCACGCTGTCAGAAATGTATCTACTGCATGTTTGTCATGTGTTTTGTAGATATTTATAAGCGTGTTAATCCCTGGCTGCATtgcaaatggcactctattccgtatatagtgcactacttttgaccagaactatgggctctggttaaaagtaaaAACTAAAAaaggttttattgtcacatacaccggataggtacagtaaaatgtgttgttttacaaggtCAGCCATAGTATTACGGTGctcctggagcaaattagggttaagtgccttgctcaaaggcacatcgACAAATTTCTCACATTGCCGGCTCGGGTATTCGAACCAACAACCTTTCagtgactggcccaacgctctaaccgctaggcagtgcactatatagggaatagattaCCTTTTGGGACGCACAAGAATCCTCTTCTTTTGTCAGTTGGATAGGATGTTAAGTTTTGTCTTCTGGTGGTGGGATTTGGTGGAGGGTGCACAAGGTGTGACCTGACTGTGTTATTGTTATGTCTGAAACACGAAAGGTAAAGTGGGGTCATAGACATCAGTATTTACCAAAGCTCAACACTTTTATTTTGTGGAGGTGGGTTGTAGGAGGTGAGGGGTGTGGGCACTAAATATTCACACTACAATTTTAATTAAAGCATTCTTGCGCCAGTTTCCCTTCTAGTCGAAAGAACCAGTATTGTTGCATTAAACATGCAGCACTTCACTGTCAGTAATGGTGAATCCTACATGATACCTGGTATATTTAGTCAAAATGTCTGCTGACATGAAATTACTAATGTAGTGAAAGATATTGAGATTCAAATCAGAGGTAACATGTCAAATGCTAATTACAGTCATGTTATGGATCATGGTTTCAGGAGAAAGTTTATCGTCTATGATTGTGAGGTAATATGTAACGTCTATGAAATGCATGCTATGGCCCTCAACAAATGCGACTTTAAAAATGTCCTGTGTTTGATTCAGATATAGTTTACTCTTAAGTGAGAAATACAAGATTTCATGATCCCTTTGTTCCTATGCATCGGAATGATGCAATTATAATTGAGATCATACTATTGATTTTATCTTCCacatatacattttattttctcaAAGACCTGGAGAGAAAAAATGTAAAGAACTAGAGTGTTATGTCCTTGAAATTAGTTTGTCCTAAACAGTCcaattgttaaaaaaaataaaaaataattcttGGTACTTGGTAATTCTTTTCTTTTTTGATATGAAATATTACAAACAAATAATGGATTGAAATATAGCTCTAAAAAGCTTTGTGTTCTCTTGTTTTGGACATGGATAATTCCTATTTGGATTATTTTGTCATTTCTAACATATATGGAGATCTTTCTGCAATCTCTTTATTTTAAGTGTTCAGTTGGTTTACTTACTGTGCGGCTTCTTAGATGCCAACCAACGATCAGAACAAAATAAGGTATGATTCAGAGGGTACAATCTATTGATGCCTGTATGTCTATTGATCAATCTATTGAATAGATTGTCATGGTGACCAATGTAGTATTTTCTGATAAGTGATGGGAAAAATTTCAGCAAGTAAGTTCTGTTTGGATCAAATTATTTTctcattttagatttttttgttaaCTGGATTCTTTAATGGATTGATTGTGTGGTTGGGTCAGGATTTGTGTACCATGAACAAACTGCTGATCTTACACAGAAACTATGCAGAAGGAGATAcagaaatacatacagtatattgctaAAATGATCAACCCAccgggcacagacgtcaattccacattggttcaatgtaattttgttgaaatgacgtagaaacaacgttgattcaaccagtatgtgcccagtgggaactTTTACTCTTGAAAATATGTTTTGTACAGCTATTTTCTGAAAACTTTAACGTAAGATTCCTGCAATATATTTTTGGGGGCTTTTTTGTTAAACTAGCAATTCTGAAAATTGTTTTTCAAAGATGGAATAAAAACATTGATTATAGTGA

Function

NR:

description
carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2-like

GO:

id name namespace
GO:0030182 neuron differentiation biological_process
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569015.2 True 5303 mRNA 0.40 7 57238260 57274001

Neighbor

gene id symbol gene type direction distance location
nramp-alpha nramp-alpha coding upstream 12574 57176451 ~ 57225686 (+)
nelfcd nelfd coding upstream 126698 57105818 ~ 57111562 (+)
LOC110494185 LOC106565423 coding upstream 133082 57073921 ~ 57105178 (+)
rabif LOC106565422 coding upstream 171198 57065044 ~ 57067062 (+)
adipor1a LOC101268928 coding upstream 177809 57051596 ~ 57060451 (+)
LOC110494190 LOC106565431 coding downstream 1276 57275277 ~ 57304551 (+)
tegt LOC100196653 coding downstream 31803 57305804 ~ 57329727 (+)
LOC110493228 LOC106583273 coding downstream 194752 57468753 ~ 57474567 (+)
LOC110494206 LOC108254821 coding downstream 224304 57498305 ~ 57548178 (+)
LOC110494197 LOC106565496 coding downstream 381948 57655949 ~ 57665568 (+)
G1467054 NA non-coding upstream 25673 57194474 ~ 57212587 (+)
G1467041 NA non-coding upstream 64295 57173549 ~ 57173965 (+)
G1467030 NA non-coding upstream 91119 57146488 ~ 57147741 (+)
G1467001 LOC106565426 non-coding upstream 121516 57113017 ~ 57116744 (+)
G1467009 NA non-coding upstream 167984 57069563 ~ 57070276 (+)
G1467113 NA non-coding downstream 65440 57339441 ~ 57340388 (+)
G1467121 NA non-coding downstream 74463 57348464 ~ 57349023 (+)
G1467123 NA non-coding downstream 75963 57349964 ~ 57351358 (+)
G1467122 NA non-coding downstream 77519 57351520 ~ 57353653 (+)
G1467124 NA non-coding downstream 85388 57359389 ~ 57359636 (+)
G1467031 NA other upstream 87917 57149303 ~ 57150343 (+)
G1467020 NA other upstream 119374 57117702 ~ 57118886 (+)
LOC110494160 LOC105017078 other upstream 655539 56575737 ~ 56584088 (+)
G1466224 gem other upstream 1017314 56219242 ~ 56220946 (+)
G1467159 LOC106565433 other downstream 204796 57478797 ~ 57554480 (+)
G1467219 NA other downstream 315864 57589865 ~ 57614300 (+)
G1469076 NA other downstream 1233296 58507297 ~ 58507885 (+)
G1470607 NA other downstream 2827891 60101892 ~ 60104007 (+)

Expression


Co-expression Network