LOC110494190 (LOC106565431)


Basic Information

Item Value
gene id LOC110494190
gene name LOC106565431
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 57275277 ~ 57304551 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950256.1
cactaaaGTGTCTTTTCAGCCTGTGGTCTTTTGAATAGGAGTCGTGTCTGCTTTATCCTCATTTGCCTGCTGGTTTGTGTATCTTTCCCTTTCTCTAATCAGCGATTGGACGGAGCGATAGGAGGTCCTGGAACATGCAAACTCAGGCAAATCTCTCAGGGGGCGAGggccaggaggaggaagaggagaaggatgcTTTGATGCTCCAGTGACAGCCCTAAATCGTCTGGTTCTCTCCTGGGGGTTGCACTGCTGTGTCCAACCTTGAGTCAACGGAAGAACcatccagacacacacagagacacttacTCCTACAAGCAAGCAACTCTCTAGCTGGACACGCTTGTCTTCTGTCTCCGCAGCCGCAACTCAAGGAGGTGGGCCAAGGAACTCTTTCCAACATCAGATTGAGATTGCCTGAATCTGAGAAACATGGAGTACACATTCCGCGCAGTAACCCACAATCCTGGGATTATAATCTGGCGAATCGAGAAAATGGAGCTGGTGCAAGTCCCTGAAAAATCCCTTGGCAATTTCTACGAGGGTGACTGCTACATCCTACTCTCTaCCCAGAAAGTGGGCAGCTCTCTGATCTATGACATCCACTACTGGATCGGCTCCCAGTCCAGTCAGGATGAACAGGGTGCGGCCGCCGTCTACACCATCCAGCTGGATGAGTTCCTGGGATCAGGGCCTGTCCAGCACCGTGAGGTCCAGAACTATGAGTCTGATGCCTTCCGAGGATACTTCAAACAAGGGGTCATCTATAAGAAGGGTGGGGTGGCGTCAGGaatgagacacacagagactaaCAGTTATGACATCCAGAGACTGCTCCATGTGAAAGGGAAGAAAAGGATAAGCGCCATGGAGGTAGAGATGAGCTGGGAAAGCTTCAATCTTGGGGATGTCTTTCTGTTGGACTCTGGTAAGACCATCATTCAGTGGAATGGACCAGAGAGCAACAGACAGGAGAGGCTCAAGGGCATGCTGTTGGCTAAAGACATTCGGGACCGGGAGCGAGGGGGTCGGGCGGAGATAGGAGTGATAGAAGGGGACACAGAGGGGAACTCCTCTAAACTGATGGAGATCCTTATTAGCATCCTGGGGCAACGGACCTCCAAGCTTCTCAATGGAATGCCTGATGAAACAGCGGACCAACAACAGAAAGCTCAGCTTACTCTGTACCATGTGTCTAATGCTGAGGGCCAGATGAAAGTCACGGAAGTTGCCACCAGGCCACTGGTTCAGGACCTGTTAAATCATGATGACTGTTACTTCCTAGACCAGGGAGGGGTGAAGATCTTTGTGTGGAAGGGGAAGCGAGCCAACAAGGCCGAGAGACAGGCTGCCTTTTCCAGAGCTTTGGAGTTCATTAAGCTGAAGAACTACTCCACCACCACCAACGTGGAGACAGTGAATGACGGGGCCGAGTCGGCCCTCTTTAAGCAGCTGTTCCAGAGCTGGAGTGTGAAGGACCAGACTGTAGGCCTGGGAAAGACACACAATGTGGGGAGAGTGGCCATTGTGACTCAGGAGAAGTTTGATGCCACACAGATGCACGTGATGCCAGAAGTAGCGGCACAGGAGCGCATGGTGGACAATGGCACTGGTCAGGTGGAGGTGTGGCGTATCGAGGACCTGGAGTTGGTCCCAGTGGAACCCCAGTGGCATGGCTTCTTCTATGGAGGAGACTGCTATCTGGTGCTCTACACTTATGAGGTCCACAGCAAGCTAAACTACCTCCTCTACATGTGGCAAGGGCGCCATGCCTCTCAGGATGAGATAGCAGCGTCTGCCTTCCAGGCCGTGGCCCTGGATCAAAAGTATGGCAACCAGCCTGTACAAGTGAGGATCACCATGGGCAAGGAACCCAGACACTTTATGGCCATGTTCAAGGGTAAAATGGTTATCTTTGAGGGCGGTACCTCCAGAAAAGGCGTGTCTGacccagagccaccagtcagatTGTTCCAGGTCCGCGGTTCTGACGCCTCCAACACCAAAGCCATCGAGGTGCCTGCCCTGGCAGCCTCGCTCAACTCCAACGATGTATTTCTGCTGAGGAGCCAGTCAGGGATTCACCTGTGGTGTGGCAAGGGATCAAGTGGGGATGAGAGGGCCATGGCTAAAGAGGTCAGCTCTGTGATTGGACAGCACTCGACTGCTGAAGAGATCATGGCAGAGGGTCAGGAGCACATTGAATTCTGGAATTTACTTGGAGGGAAGGCCCCTTATGCCAACAACAAGAGACTACAGCAGGTTGCTCTGGATCATCAGCCGCGTCTCTTTGAATGCTCCAATAAAACTGGTCGTTTCATCGTTACCGAGGTGACCCAGTTCACCCAGGATGACCTCAGCGAGGATGATGTCATGTTGCTAGACACGTGGGACCAGGTCTTCCTCTGGGTGGGGAACGAGGCCAATGAGGTGGAGAGGAAGGAAGCGGTGGTCACCAGTCAGGAGTACCTCCGTACCCACCCAGGGTCCCGGGACCCTGACACCCCTATCCTCCTCATCAAGCAGCGGTATGAACCCCCCACCTTCACCGGCTGGTTCACCGCCTGGGACCCCTCCAAATGGAGTGGTGGGAAAACGTACGAAGAGCTGAAGAAAGAGTTGGGTGAGGTGACATCCCTCGTAAGGATCACAAATGGGCAGAATGGTGTTGAGACCAGGAAGAGCTTCCAGTCTTACCCACCAGAGGACTTGATCAACAAACTAGCCAATGAGCTGCCTGAGGGTGTCGACCCCACCCAGAAGGAGAAACATCTCTCAGACTCAGACTTCACTGCCATATTTGGAATGTCTAAAGACCACTTTGCCAGCCTGCCTCAATGGAAGCAGCTGAGCATTAAAAAAGGCAAAGGCTTATTTTAAGGGGAATTCATCTCTGATGAATTGATGTCTTATTATTTAAATCTAATGACAGTCGGTCTAAAAAAAACCTGCACTTGTCTGTTCCTAATTGTGCATTTAAAAAAGATGTTCCTATatcatactatatatatactgtatgtctgcctCTCAATTAAGTAAATAGATGTCCATGTTGAA

Function

NR:

description
advillin-like

GO: NA

KEGG:

id description
K08017 AVIL; advillin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950256.1 True 3057 mRNA 0.51 20 57275277 57304551

Neighbor

gene id symbol gene type direction distance location
LOC110494189 LOC106565429 coding upstream 1276 57238260 ~ 57274001 (+)
nramp-alpha nramp-alpha coding upstream 49591 57176451 ~ 57225686 (+)
nelfcd nelfd coding upstream 163715 57105818 ~ 57111562 (+)
LOC110494185 LOC106565423 coding upstream 170099 57073921 ~ 57105178 (+)
rabif LOC106565422 coding upstream 208215 57065044 ~ 57067062 (+)
tegt LOC100196653 coding downstream 1253 57305804 ~ 57329727 (+)
LOC110493228 LOC106583273 coding downstream 164202 57468753 ~ 57474567 (+)
LOC110494206 LOC108254821 coding downstream 193754 57498305 ~ 57548178 (+)
LOC110494197 LOC106565496 coding downstream 351398 57655949 ~ 57665568 (+)
LOC110494203 LOC106565438 coding downstream 379294 57683845 ~ 57688188 (+)
G1467054 NA non-coding upstream 62690 57194474 ~ 57212587 (+)
G1467041 NA non-coding upstream 101312 57173549 ~ 57173965 (+)
G1467030 NA non-coding upstream 128136 57146488 ~ 57147741 (+)
G1467001 LOC106565426 non-coding upstream 158533 57113017 ~ 57116744 (+)
G1467009 NA non-coding upstream 205001 57069563 ~ 57070276 (+)
G1467113 NA non-coding downstream 34890 57339441 ~ 57340388 (+)
G1467121 NA non-coding downstream 43913 57348464 ~ 57349023 (+)
G1467123 NA non-coding downstream 45413 57349964 ~ 57351358 (+)
G1467122 NA non-coding downstream 46969 57351520 ~ 57353653 (+)
G1467124 NA non-coding downstream 54838 57359389 ~ 57359636 (+)
G1467031 NA other upstream 124934 57149303 ~ 57150343 (+)
G1467020 NA other upstream 156391 57117702 ~ 57118886 (+)
LOC110494160 LOC105017078 other upstream 692556 56575737 ~ 56584088 (+)
G1466224 gem other upstream 1054331 56219242 ~ 56220946 (+)
G1467159 LOC106565433 other downstream 174246 57478797 ~ 57554480 (+)
G1467219 NA other downstream 285314 57589865 ~ 57614300 (+)
G1469076 NA other downstream 1202746 58507297 ~ 58507885 (+)
G1470607 NA other downstream 2797341 60101892 ~ 60104007 (+)

Expression


Co-expression Network