sarnp (LOC106565436)


Basic Information

Item Value
gene id sarnp
gene name LOC106565436
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 57549738 ~ 57617300 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569047.2
CGAGTATAAGCGGCGTATAGCCAATCATCGGTCGTTTTATTGCGCCTTTCACTAAAACGCATTACCATTGGATAATTTTCTTCCGCGCTTTCCCTATACAAACAAGATGGCTGGGGTTGTTGAACTCCAGAAATTGAAGTTGGCTGAGCTCAAGCAGGAGTGTGCTGTGAGGGGATTGGCCGTGAAAGGAAACAAAGGTGACCTTATTGGCCGGTTGCAGGCGTACCTTGAGGAGCACGAAGATGAGGTGAACGAAGAGGAGGTTTTGGGAGAGTTGGAGGACAATCCTAAAGAGGAGGAAATCAGTGAAACACCTGCAGAAGTGGCAGTAGAAAAGGCAGCTGTACCTGAAAAGGATGCTGAGAAGAAAGTTGTAAAAATCACTGCCCCATCAGTTGCGGATGAGAGGCTGCAGAAGAGGGCAGAGCGTTTCAACCTGCCTGCTACTGCTGATAGTAAGAAAGAGGCCCGCGCTGCCAGATTTGGTTTACCGGCTCTATCACCAGCTTCCAAACCAGGTGCATCAGTTGCAAATAGTAAACTAACTGTCAGCGTTGAGGTCCTGAAGAAGCGGGCAGAGCGCTTTGGCATGAATGTGTCCTCTGTCGCCAAAACGGTTGAAGTCGACGAGAAGCTGaaaaagaggaaggagaggtttGGGATTCTCACTGCTGCTGCTGTAGTTGGGGCCGAAGATAGCGAGGTAAAGAAGAGGAAACGAGCAGACCGATTTGGAAATAATTGATTCAATTTTATATTTGTACTTTTTTAAtgatttaattttgtatttttttttacttgttgctcttgttttacagtggtaaaatGCCAACCTGTGCTGTTCAGTAAGAAATAATCTTTACACTATGTAAAAGTTGGAAATTAAAGATCTTATCCAATTTCCCACAAGTGTCCTAACAACCCTTGAGTAAACTTGTCCTATTGCTGTTGGGAAATAAGTCTGTGTACCCCTTCAGGTGTTAAAGGAACTCCTCCAAGGGAGGGATGGTCCTGCTGTATCTGCTCTGCTACTTTTCAGTTGGGAATTCATTGTTATATCAGATACGCACTTCAATAGTTTGCCAGTTTGGATTCCTGGCTGCACACTTATGCTAACTTCATAATGATAAATGCATCATCTTACAGTAATTTAATAGTGCTACAAAATACATTTCAGACACTTTGGGATGATTTAGGCATAGCATTTCAAACATGAAGTATTGACTTGGCATTgatttttgaacagaaatgctAGTTGGCATTTGGGGATGTGAGCCAGGGTAAACAAAAGCATGGACTTTTCCAAAGACTACTTTCATATTGTTTTCCTTACACTGTGATTTTTAATTtggatgaactatccctttaacacgTTTGCTGAGTGGGTTTGTAAACAGTTAATAATGAATAGATCGTTTCTAGATCTGTAATAAAACGTGACTGTTATTGGA

Function

NR:

description
SAP domain-containing ribonucleoprotein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569047.2 True 1451 mRNA 0.42 11 57549738 57617300
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Neighbor

gene id symbol gene type direction distance location
si:ch1073-456m8.1 LOC106565433 coding downstream 57339 57480464 ~ 57492399 (-)
LOC110494193 LOC106565432 coding downstream 89087 57357378 ~ 57460651 (-)
LOC110494192 LOC106565510 coding downstream 216744 57330121 ~ 57332994 (-)
LOC118940479 NA coding downstream 241255 57294236 ~ 57308483 (-)
hig1a hig1a coding downstream 316305 57229440 ~ 57233433 (-)
LOC110494209 LOC106565437 coding upstream 4016 57621316 ~ 57636564 (-)
LOC110494204 LOC106565439 coding upstream 52444 57669744 ~ 57679619 (-)
mmp19 LOC106565443 coding upstream 168363 57785663 ~ 57790549 (-)
LOC110494200 mcrs1 coding upstream 196040 57813340 ~ 57825289 (-)
LOC110494198 LOC106565446 coding upstream 217451 57834751 ~ 57841824 (-)
G1468019 NA non-coding downstream 90630 57458896 ~ 57459108 (-)
G1468018 NA non-coding downstream 91761 57457639 ~ 57457977 (-)
G1468011 NA non-coding downstream 98466 57451059 ~ 57451272 (-)
G1468008 NA non-coding downstream 100647 57448606 ~ 57449091 (-)
G1468002 NA non-coding downstream 108445 57441057 ~ 57441293 (-)
G1468102 NA non-coding upstream 1809 57619109 ~ 57619323 (-)
G1468124 NA non-coding upstream 37055 57654355 ~ 57662247 (-)
G1468151 NA non-coding upstream 82157 57699457 ~ 57699820 (-)
G1468158 NA non-coding upstream 95056 57712356 ~ 57712590 (-)
G1468160 NA non-coding upstream 95718 57713018 ~ 57713248 (-)
elmo2 LOC106565399 other downstream 1049413 56494856 ~ 56530610 (-)
dnai1.2 dnai1 other downstream 1382401 56130667 ~ 56167366 (-)
LOC110494137 LOC106565384 other downstream 1579024 55954473 ~ 55971001 (-)
G1464954 NA other downstream 2821843 54726796 ~ 54727895 (-)
G1470802 NA other upstream 2057241 59674541 ~ 59676694 (-)
LOC110494253 LOC106565590 other upstream 2373675 59990975 ~ 59999740 (-)
LOC110494257 LOC106565586 other upstream 2489369 60104033 ~ 60110249 (-)
G1471219 srgap3 other upstream 2758446 60375633 ~ 60376864 (-)
G1471564 NA other upstream 3020880 60638180 ~ 60639335 (-)

Expression

sarnp(LOC106565436) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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sarnp(LOC106565436) Expression in each Bioproject

Bar chart with 21 bars.
sarnp(LOC106565436) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
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Co-expression Network