LOC110494203 (LOC106565438)


Basic Information

Item Value
gene id LOC110494203
gene name LOC106565438
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 57683845 ~ 57688188 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569038.2
GCCTCTGAAAATTTCTGTCAAGCATCTTCAACTTCtcatctttttatttatttttatttttatggaatCCTATTTTGGTAACCTTTTTTCCATTTTATGTTAAATTGGCATGAAAGTCTTTTCATGCACTTGAATGAACATGCTGTCTTTTGTGAGATTTTATACTGGTTTGCATCCTCTCCATCTCAGTACATTTCATTTGTATTTGAATGGCATCAAATGACAGAGGCGATATGTCTAATGTGGTGCTAGATATTCTGCTCCACATTGTATAACAGGGCTGTATTGTTGGCACAGAATTTAGTTCAGCACCCTAAGCTTAAAGAGATTTGGGACTAAATGATTAATTGAATTACAAAATAGAGTGCATGTGGCGcaatgtgtgcctgtgtgtgtctttgttttgAACAGGTTAGATTTGACCATTCAGCACCTTACTCAAGCCTGTcttcatttctttattttttacatgggATATGCAATAtagatatagaatatatagaatagaatatagaccTATGTGCAATGTCATCCAGCAAAAGGCACTCTATAAACGGTGTGTCCATTACTGCTATTTAGACCTTTGTAATGGCTTAAGAGactacaaaacatattttacataacATTTTATAACCCTCATAATGTTTTTCATGAaagcaaaaataataatattcacaTAAACAAATAATTTTCAGTCACCACAGACTGGTCAACGCCAATTGTCACTTAATCACTCTCATTGAGCTAAATTCCATCTACAATGTTTATTAGGCCTACATATTTCATTTCGACTtcaaaattataataatatagtaataaaaCTAAAAACAACGTAATTATCTGCAAACATGCTTTGTCTTTTGTCATCGAATCTGGGCTGTGGCTGTGTGTCGCTGTCTGGTTCATTGAGTGAGAAAGCACCGCCTCCGCCTCCTCCCGCAGTGGCCAGCGCACTCTGAAGCTGTCTAGAGAAGTGTGCACTGTTCGTCTTTCCGGCGCCTCTATCCCAGCATCATACCTTTCCTCATAAAGCAATCAAAATGCGTGAATGTATCTCAGTACACGTGGGTCAGGCTGGAGTCCAGATGGGCAATGCATGCTGGGAACTCTACTGTCTGGAGCACGGGATCCAGCCTGATGGTCAGATGCCCAGTGACAAGACCATTGGAGGAGGAGACGACTCCTTCAACACCTTCTTCAGTGAGACTGGAGCTGGCAAGCACGTCCCCAGGGCTGTGTTTGTGGATCTGGAGCCCACTGTCATTGATGAGGTGCGCACAGGAACTTACCGCCAACTCTTCCATCCTGAGCAGCTGATCACTGGGAAGGAGGATGCAGCCAACAACTACGCCCGTGGTCATTACACCATCGGCAAAGAGATCATAGACATGGTTCTGGACAGGACTCGCAAGCTGgcTGACCAGTGCACTGGCCTCCAGGGCTTCCTGGTCTTCCACAGCTTTGGAGGTGGCACCGGTTCCGGTTTCACCTCCCTGTTAATGGAACGCCTGTCTGTTGACTATGGCAAGAAGTCCAAGCTTGAGTTCTCCATATACCCAGCTCCCCAGGTATCCACAGCTGTTGTTGAGCCCTACAACGCCATCCTGACCACCCACACCACCCTGGAACATTCAGACTGTGCTTTCATGGTAGACAATGAGGCAATCTATGACATCTGCCGTAGGAACCTTGATATTGAGCGTCCGTCCTACACTAATCTTAACAGGTTGATTGGCCAGATTGTGTCCTCCATCACTGCTTCCCTCCGATTCGATGGTGCCCTCAATGTGgatctgacagagttccagactAACTTGGTGCCCTATCCCCGTATCCACTTCCCCCTGGCCACCTATGCCCCAGTGATCTCAGCAGAGAGGGCTTACCATGAGCAACTCTCTGTGTCTGAGATCACCAATGCTTGCTTTGAGCCATGTAATCAGATGGTAAAATGTGACCCACGTCACGGCAAGTACATGGCCTGCTGTCTGCTGTACCGTGGCGACGTTGTTCCCAAAGATGTTAACGCTGCCATTGCCACCATCAAAACAAAACGCTCCATCCAGTTTGTAGACTGGTGCCCAACTGGTTTCAAGGTTGGTATCAACTACCAGCCCCCAACTGTGGTACCTGGTGGAGATCTGGCCAAGGTCCAGAGGGCAGTGTGCATGCTTAGCAACACCACTGCTATTGCAGAGGCCTGGGCCCGCCTTGACCACAAGTTTGACCTGATGTATGCCAAGCGTGCTTTCGTGCATTGGTACGTAGGTGAgggtatggaggagggagagttcTCTGAGGCCAGGGAAGACATGGCTGCCCTGGAGAAAGATTATGAGGAAGTGGGTGTCGACTCcattgagggagagggagaggaggagggagaggagtatTAAATACCCTGCCAAATTCACACATTCCTATGTGACCCAGAGCTGAGAATGACTGAATTGTTtccactacactcttagaaaaagggttccaaaagggttcttcgaccgtccccataggataaccctttttgcttccaggtgaatcatttttggttccaggtaaaacccttttgagttccaaaagggttcaaccgtgaaccaaaaagggttcttcaaagggttctctaacagggacagccaaagaacccttttaggttctagatagaacctttttttctaagagtgtatgattCTGTCTTGATCAACCAATATAATGAAGTAGCAGGATGGTAAGGTGTAGTCTACAAGTCTTAAAATATGCTCACTCACAAAGGCTGATGTCCTTGCTTAATCTGTGCTTTTGTAGCGAGATCCTAATAAAATTATCATCAATAAAGAA

Function

NR:

description
PREDICTED: tubulin alpha chain isoform X1

GO: NA

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569038.2 True 2832 mRNA 0.45 4 57683845 57688188

Neighbor

gene id symbol gene type direction distance location
LOC110494197 LOC106565496 coding upstream 18277 57655949 ~ 57665568 (+)
LOC110494206 LOC108254821 coding upstream 138363 57498305 ~ 57548178 (+)
LOC110493228 LOC106583273 coding upstream 209278 57468753 ~ 57474567 (+)
tegt LOC100196653 coding upstream 354118 57305804 ~ 57329727 (+)
LOC110494190 LOC106565431 coding upstream 379294 57275277 ~ 57304551 (+)
LOC110494205 LOC106565438 coding downstream 5988 57694176 ~ 57697563 (+)
LOC110494199 LOC106565440 coding downstream 17232 57705420 ~ 57712033 (+)
LOC110494196 timeless coding downstream 35483 57723671 ~ 57757730 (+)
LOC110494208 LOC106565442 coding downstream 72491 57760679 ~ 57784991 (+)
LOC118940480 NA coding downstream 215000 57903188 ~ 57918719 (+)
G1467315 NA non-coding upstream 34412 57649213 ~ 57649433 (+)
G1467308 NA non-coding upstream 42365 57641249 ~ 57641480 (+)
G1467307 NA non-coding upstream 43006 57640567 ~ 57640839 (+)
G1467159 LOC106565433 non-coding upstream 129365 57478797 ~ 57554480 (+)
G1467338 NA non-coding downstream 5462 57693650 ~ 57693953 (+)
G1468149 NA non-coding downstream 16615 57704803 ~ 57705010 (+)
G1468161 NA non-coding downstream 25480 57713668 ~ 57713907 (+)
G1468176 NA non-coding downstream 35878 57724066 ~ 57724291 (+)
G1468200 NA non-coding downstream 82390 57770578 ~ 57819910 (+)
G1467219 NA other upstream 69545 57589865 ~ 57614300 (+)
G1467031 NA other upstream 533502 57149303 ~ 57150343 (+)
G1467030 NA other upstream 536104 57146488 ~ 57147741 (+)
G1469076 NA other downstream 819109 58507297 ~ 58507885 (+)
G1470607 NA other downstream 2413704 60101892 ~ 60104007 (+)
G1471723 LOC100380707 other downstream 3284290 60972478 ~ 60999063 (+)
LOC110494283 LOC106565563 other downstream 3868131 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 5010315 62698503 ~ 62698815 (+)

Expression


Co-expression Network