LOC110494205 (LOC106565438)


Basic Information

Item Value
gene id LOC110494205
gene name LOC106565438
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 57694176 ~ 57697563 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569040.2
CGGACCGTCATAATCAGTAGCCTATATAAAGCCCCACCCTTACACATTACTGAAACTTCTCACATTAGACTCCTAAAGGTCCGTCTGTGAGAGTTGGTCTTTAATCTACTGCTTCTTATTTTATCTTTACTGCTCTTATAAAACTCCTCATCTTAGACATGCGTGAGTGTATCTCGGTCCATGTGGGCCAGGCTGGAGTCCAGATCGGCAATGCATGCTGGGAGCTGTACTGTCTTGAGCATGGGATCCAACCAGATGGCAAGATGCCCAGTGACAAGACCATTGGAGGAGGTGACGACTCCTTTAACACCTTCTTCAGTGAGACTGGAGCTGGCAAGCACGTCCCCAGGGCTGTGTTTGTGGATCTGGAGCCCACTGTCATTGATGAGGTGCGATCTGGAACTTACCGCCAGCTCTTCCACCCTGAGCAGCTGATCACTGGGAAGGAGGATGCAGCCAACAACTACGCCCGTGGGCATTACACCATCGGCAAAGAGATCATCGACTTGGTTCTGGACAGGATCCGCAAACTGgcTGACCAGTGCACTGGCCTCCAGGGCTTCCTGGTCTTCCACAGCTTTGGAGGTGGCACCGGTTCTGGTTTCACTTCCCTGTTGATGGAACGCCTGTCTGTTGACTATGGCAAGAAGTCCAAGCTTGAGTTCTCCATCTACCCAGCTCCCCAGGTGTCCACAGCTGTTGTTGAGCCCTACAACTCAATCCTGACCACCCACACCACCCTGGAGCATTCTGACTGTGCTTTCATGGTAGACAATGAGGCCATCTATGACATCTGCCGTAGGAACCTCGATATCGAGCGTCCTTCCTACACCAACCTGAACAGGTTGATCAGCCAGATTGTGTCCTCAATCACTGCTTCCCTCCGATTCGATGGTGCCCTCAATGTTgatctgacagagttccagaccaACTTGGTGCCCTATCCCCGTATCCACTTCCCCCTTGCCACCTATGCCCCAGTGATCTCAGCAGAGAAGGCTTACCATGAGCAGCTGACTGTTTCAGAGATCACAAATGCCTGTTTTGAGCCATGTAATCAGATGGTGAAATGTGACCCACGTCACGGCAAGTACATGGCCTGCTGTCTGCTGTACCGTGGCGACGTTGTGCCCAAAGATGTTAACGCTGCCATTGCCACCATCAAAACAAAACGCTCCATCCAGTTTGTAGACTGGTGCCCAACTGGTTTCAAGGTTGGTATCAACTACCAGCCCCCAACTGTGGTACCTGGTGGAGATCTGGCCAAGGTCCAGAGGGCAGTGTGCATGCTTAGCAACACCACTGCAGTGGCTGAGGCTTGGGCCCGCCTTGACCACAAGTTTGACCTGATGTATGCCAAGCGTGCATTCGTGCACTGGTACGTAGGTGAgggtatggaggagggagagttcTCTGAGGCCAGGGAAGACATGGCTGCCCTGGAGAAAGATTATGAGGAGGTGGGCGCAGATAGCGTggaaggagaggatgagggagaagaGTACTAAGAAGTATCAGGAAACTTCTGCCTGTCTCAACACATTCAACCATTCCTCATGGAACAATGCTTTTCTGTCCCTTTGTAACCTTGACTTTTAAATATTGCTCTATTTTCTTGCAATAAAAGTCAATTTCAATGTTT

Function

NR:

description
PREDICTED: tubulin alpha-1C chain isoform X2

GO: NA

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569040.2 True 1642 mRNA 0.51 4 57694176 57697563

Neighbor

gene id symbol gene type direction distance location
LOC110494203 LOC106565438 coding upstream 5988 57683845 ~ 57688188 (+)
LOC110494197 LOC106565496 coding upstream 28608 57655949 ~ 57665568 (+)
LOC110494206 LOC108254821 coding upstream 148694 57498305 ~ 57548178 (+)
LOC110493228 LOC106583273 coding upstream 219609 57468753 ~ 57474567 (+)
tegt LOC100196653 coding upstream 364449 57305804 ~ 57329727 (+)
LOC110494199 LOC106565440 coding downstream 7857 57705420 ~ 57712033 (+)
LOC110494196 timeless coding downstream 26108 57723671 ~ 57757730 (+)
LOC110494208 LOC106565442 coding downstream 63116 57760679 ~ 57784991 (+)
LOC118940480 NA coding downstream 205625 57903188 ~ 57918719 (+)
LOC110494214 LOC106565448 coding downstream 243340 57940903 ~ 57949816 (+)
G1467338 NA non-coding upstream 223 57693650 ~ 57693953 (+)
G1467315 NA non-coding upstream 44743 57649213 ~ 57649433 (+)
G1467308 NA non-coding upstream 52696 57641249 ~ 57641480 (+)
G1467307 NA non-coding upstream 53337 57640567 ~ 57640839 (+)
G1467159 LOC106565433 non-coding upstream 139696 57478797 ~ 57554480 (+)
G1468149 NA non-coding downstream 7240 57704803 ~ 57705010 (+)
G1468161 NA non-coding downstream 16105 57713668 ~ 57713907 (+)
G1468176 NA non-coding downstream 26503 57724066 ~ 57724291 (+)
G1468200 NA non-coding downstream 73015 57770578 ~ 57819910 (+)
G1468256 NA non-coding downstream 158607 57856170 ~ 57856473 (+)
G1467219 NA other upstream 79876 57589865 ~ 57614300 (+)
G1467031 NA other upstream 543833 57149303 ~ 57150343 (+)
G1467030 NA other upstream 546435 57146488 ~ 57147741 (+)
G1469076 NA other downstream 809734 58507297 ~ 58507885 (+)
G1470607 NA other downstream 2404329 60101892 ~ 60104007 (+)
G1471723 LOC100380707 other downstream 3274915 60972478 ~ 60999063 (+)
LOC110494283 LOC106565563 other downstream 3858756 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 5000940 62698503 ~ 62698815 (+)

Expression


Co-expression Network