LOC110494199 (LOC106565440)


Basic Information

Item Value
gene id LOC110494199
gene name LOC106565440
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 57705420 ~ 57712033 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569035.2
ATGAGCCACCCTTCAATGAACCACCCTTCAGGACGCGCCTCCACCTCCTACCGTCGCACATTCGGGGGCCCCAACCCCATCTCGATGTCCTCCTATTCGCCTTCATACTCCCGCATGCCAATGTCCAGCGGGCACTACATGCGCTCTATATCACCCGTGGTGCCCACTCGCTCCTCcaactaccaccaccagcagCGCCAGCGCTCCAGCACCCAGCCGCCCCGTCTCACCTACGAAAAGGTGGACTTCCAGCTGGCCGACGCGGTCAACGCCGAGTTCCTGGCCACCCGCAGCAACGAGAAGGTGGAGCTGCAGGACCTCAACGACCGCTTCGCCAGCTTCATCGACAAGGTGCACTACCTGGAGCAGCAGAACAGCGGGTTGCAGCAGGAGCTGAGCCAGTTCAAGGGTCAGCAGCAGGAGGGACAGCCCAACCGGGCCACCGAGCTCTTCCAGGAGGAGCTGAGGGAGCTGAGGCGCCAGCTGGACCACGTGGGAAAGGAGAGGGACCAGTACCAGGTGGAGAGGGACAACCTGGCAGAAGACATGAACCTTATCAAACAGAGACTGGATGAGGAGAATCAGAAGAGATCTGAGGCTGAGAGCAACCTGCTTGTCTTCCGCAAGGATGTGGATGATGCCACTCTGTCTCGCCTGGAGCTGGAGAGGAAGATTGAGTCTCTGATGGATGAGATTGAGTTCCTCAAGAAGCTACATGATGAGGAGATCCAGGAGGTGCAGGTGAGTTTCCAGACCCAGCAAATGAAGATGGAGGTGGACCAGACTGCCAGGCCTGACCTGACCGCTGCCCTCAAGGACATCAGGGCCCAGTACGAGAACATCGCCTCCAAGAACATGTATGAGTCTGAGGAGTGGTACAAGTCCAAGTTTGCTGACCTGACAGACTCTGCCAAGCGTAACACTGATGCTATGAGGCAGGCCAAGCAAGAGCAAAACGAGCACAGGAGGCAGATGCAGTCCCTCAGCTGTGAGATTGATGCACTGAAGAGCACGAACGAGGCTCTGCTGAGGCAGATGCGTGAGATGGAGGACCAGTTTGGCGTGGAGGCCAATAACTACCAGGACAACGTGGTCCGCCACGAGGACGAGATCCACCACCTGAAGGACGAGATGGCCCGACACCTGAGGGAGTACCAGGACCTGCTCAACGTCAAGATGGCCCTGGACATAGAAATCGCCACTTACCGCAAGctgctggagggagaggagagcagGATTACTGTTCCCATGCATCCCTCCCAGTATGGCCGTAGTGGTGATAGGGGCTATGACCATACCCCAGACATCCCTAGCAGGAAGCCTGTGGTGATTAAGACAGTGGAGACTCGTGATGGAGAGgtggtgaaggaatcaaagaaggagaaggagaggagtgagagggatGGCAAACATGATACTAATGACGGGGATCATGGCAGGGATGACCACGATGACTAGAATAGTTAGGTACCAATCACCTGTTCCAGATTCAAATGTAGCAATACAACAcaaaagaacaaaaaaaaataGTTAAGAGCTACATACTCCATAATTGCTGTTCACCTTTCACCCTTTAAGATCACATTTTTCTGTAGCGCAGAGGGACTGTAGTATATATTTGTGCAATGTTAAAAGTTGACGAAATCTCATTTAGATAGCAAACTTAGTCACAGGATGTGATCGTGGTGCTAGTTTCAATAACCGATCATTCCTCATTGAagataaaatacaaaacaaagacaGCCATACATGAGCATACCCAGACACGATAGTCCTATTTTTCCACGATAGGCAAATTTAACCTTTTTATCGATACACCACTTGAGGCCTTGATTTACAGTTAAATGATATACTTTTTTTTGTAGCTGAACTTATCATTCAATAAAATGGGTAAATGGAAAGTGGCAAAAACAAAGCAAAAGTTTTTTTTGTGATCCCTCCACAAAAACAAAACATCTCTGACATGGTACTCTCTCCAGTCGAAGGACATGATTTGATTTAGCTTTGAGAGACAGTGGACAACAATCAGTACAATTTAAAAAGGAGAGGGTCTTTGTATAGTGTCATGGAACTCTCAATGTAAAATATTCTGCCAGAGAGGGACCACCAATGGGATTTATTATCGACACATACAGAACAATCAAAGGCCACAGTAGCAGCACCACATACTCTGCTCACATTCCACTCACCTCAAAATAGAAGGGAAATGTGCTATGCGATTATATGAGAATGTGTGTTTCTGACagaaatagagaataaaaaagaAAATGAAAATGCTAATAAAGTAATCTGGGACAGAG

Function

NR:

description
plasticin-like

GO:

id name namespace
GO:0045098 type III intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07607 PRPH; peripherin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569035.2 True 2300 mRNA 0.49 9 57705420 57712033

Neighbor

gene id symbol gene type direction distance location
LOC110494205 LOC106565438 coding upstream 7857 57694176 ~ 57697563 (+)
LOC110494203 LOC106565438 coding upstream 17232 57683845 ~ 57688188 (+)
LOC110494197 LOC106565496 coding upstream 39852 57655949 ~ 57665568 (+)
LOC110494206 LOC108254821 coding upstream 159938 57498305 ~ 57548178 (+)
LOC110493228 LOC106583273 coding upstream 230853 57468753 ~ 57474567 (+)
LOC110494196 timeless coding downstream 11638 57723671 ~ 57757730 (+)
LOC110494208 LOC106565442 coding downstream 48646 57760679 ~ 57784991 (+)
LOC118940480 NA coding downstream 191155 57903188 ~ 57918719 (+)
LOC110494214 LOC106565448 coding downstream 228870 57940903 ~ 57949816 (+)
LOC110494215 LOC106565449 coding downstream 269119 57981152 ~ 58034780 (+)
G1468149 NA non-coding upstream 410 57704803 ~ 57705010 (+)
G1467338 NA non-coding upstream 11467 57693650 ~ 57693953 (+)
G1467315 NA non-coding upstream 55987 57649213 ~ 57649433 (+)
G1467308 NA non-coding upstream 63940 57641249 ~ 57641480 (+)
G1467307 NA non-coding upstream 64581 57640567 ~ 57640839 (+)
G1468161 NA non-coding downstream 1635 57713668 ~ 57713907 (+)
G1468176 NA non-coding downstream 12033 57724066 ~ 57724291 (+)
G1468200 NA non-coding downstream 58545 57770578 ~ 57819910 (+)
G1468256 NA non-coding downstream 144137 57856170 ~ 57856473 (+)
G1468270 NA non-coding downstream 176268 57888301 ~ 57888549 (+)
G1467219 NA other upstream 91120 57589865 ~ 57614300 (+)
G1467159 LOC106565433 other upstream 221831 57478797 ~ 57554480 (+)
G1467031 NA other upstream 555077 57149303 ~ 57150343 (+)
G1467030 NA other upstream 557679 57146488 ~ 57147741 (+)
G1469076 NA other downstream 795264 58507297 ~ 58507885 (+)
G1470607 NA other downstream 2389859 60101892 ~ 60104007 (+)
G1471723 LOC100380707 other downstream 3260445 60972478 ~ 60999063 (+)
LOC110494283 LOC106565563 other downstream 3844286 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 4986470 62698503 ~ 62698815 (+)

Expression


Co-expression Network