LOC110494208 (LOC106565442)


Basic Information

Item Value
gene id LOC110494208
gene name LOC106565442
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 57760679 ~ 57784991 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950264.1
TGGTCTGTTGGCGTTGGCTATGATGTCAAGCGTTTTCAGCTGTTGGCTGGAcgttggaggggagagagagactcgtGGAGAAAAATACTATTTTAAAATAAAGTAGTTTAGAGCTCTAGAGAACTAGACCCCCTTGGGTATCGATATACAGTCCAcgtcagagagagggaaagaggaggtgtgtAAAGGGAGAGACATTTGGCTCGCTGTAGCCAACTTTTTACAGACGTGACTAGCTCGCCAACTGACAAACCGCCTGTTAATACAATGCCATGGGATTATGAATAAACATGATCAACCAAGAGCTCAAGTTCACGCAAACTCATCCGTTGAGAGTGCAAATAACGCCCGACCGATTTAATTTTGGACACCGTTTTTAAAGAAGACGAGAACGTGGCTGATTCCTTTTGAATAGCCGACTTTTGTTGTAAAAACAGTGAAGGACTTTTTTTGTGCTCACTGTATGTGCATAGGAACCTGTTTTTCCGCCGCTGCTTCGATGTTCTGTTGTTTTCCGTTGTGTTCATGCCTGACAATTCTCACGGAAACAGACCCACATAGCCGCTCGCAGTAGGCACACAAGCTGTTCTGATGGACTCCAGATAACAGCACCACTCCTCATCCTCCTGTCCCAACCTTTaacccccacctcctcctcctccttgtctgGTTGGTCTATTGGAGCCCCAGGATGACAGACCCTAATGGGTCTGTGGGAGAGGGCTTGGCCGAGGTGGATGCCTGCAGCCTGGAGATCGAGAGGCAGTATGAGGTCATCCCTGCCGTCATCTGCTCCATGTGCTGCCTGTTCGGCATCATCTACTGCTTCTTCGGCTACCGCTGCTTCAAAGCTGTCATGTTCCTGTCGGGCCTGATGTTTGGCTCGGTCATCATCTTTCTGCTGTGCCACAAGGAGCGGGTGCTGGACACCCAGCTGAGCGTGGAGGCCTCGGCAGGTATTGGCCTGGGCATCGGCCTGCTGTGTGGCCTGGTCACCATGCTGGTGCGCTCAGTGGGCCTCTTCATGACAGGCCTCCTGCTGGGCCTGCTGCTTGCCCTCGCCGCCCTTCTGGTCACCCACCAGTTCTACACCCCCACCACCGTCTGGGTGCCCCTGGGGGCACTGCTGGGCACAGGCATGCTGTTCGCCGTGCTCACCCTGCAGTGGCAGAAGCTCTTCACCGTATTGTCTACGTCCGTGTTCGGGGCAGCCATCATGACGGTGTGCGCTGACTACTTTGTGGAAATGCTGGCGCTTGCCAGCCACGTGTACGAGTGCCTGAGACTTTCGCCGCCGCCGCCGCTCTGCTGGTACAGCTGGGTGATCCTGGGTATCTGGCCGACACTCAGCTTTATGGGGGTGCTGGTGCAGTGGAAGCTGACGGCTGAAGGCTTCTCACACACTGAGGtCATCATCAGCAGGAGGCAGAAGCGGGTCCAGTTGATGCGGATCAGGCAGAAAGATGCCAAGAAGCGGCAGCAGAGCGGTGGACAAGAGGGCACTTACCGTCGCAAGCCTACCCCCGTCAAACGCTACGCAGGAGACCTGCTGGCAccgAGTTACCTGCAGAGTctgagggacagacagatggGCACAGGCAACTCCCTCAGCAGCCTGGGCACTGCCAACCACACCATGATTGACTTTGACTACGAGACTGGCTCCACCGTGCCCCTCACCGCCACTACACCAGTCATCAGGGTCTGACGCACCGAGGGACAAGCAGGAGAACAACCACTTGTTTCTTGTCCCTCCTCCACAGTCCTCCTCCCCTACAGACTGTTATTTTAGGGCCTCAGCTCTTATTTAGGCAATGTTCGAGTCTATTGAATAGTGAATCTACCTTCCATTGAGCTGGAATAGGGCCTTGAATGCTGTCCAAGTGAAGATCATTACACCAATAGTTCCTAGCACAACTCCAGTGTAACTCTCAGCCTATCATTGTTGGACGTTTGGAATGGCCGACTTGAGAGTGATGGAATGGTTCCTCTGTCTGTGAGCTGTTCCCTAAGAGTTGTTGGGAGGGACGTTTGGCCTCTTGTTTGATGTGTGCTGTAACCACTCTGTGTCAATAGACTGTGCCTGTGTGGCCTCTCCCTGTGTTGTCTGCTCTGAGCGTGGGAGGTCCATGTGAAAAGTCAGAAGGCCActgaagagggaaggagagagggagggagagagggagaaagagcagaAATAATCTCATCTGACTTCTTATGTCATATGCTTTTTTTGGTGCcgttatgattgattgattatatATGGGAAAAATCACTTGACTGATGAAAACAGACTATTTTTGCTGTTCGGGAACCAATAATGGGGATGGAAATGGCTATGAATAGCACGAGAGCTACCTCCTCGAGTAATATCAACTTTTACAATTGGAGTTATCTGTGCTTTAATGACTTGAAATTAACCAGTGGCATGTAACTTCTGGTCACCTGACTTCCTCAAAGAATAGGAGAGCAGCTGTTGTTGAGGATGCACTGTGACTGGACAAAGACGAGGACAAGTCAAGACACATTTCTCTGatctgtgtttgttgtctgtgcgagtgtgtgtgcgtttgtaatGTTATGGTGTGTGTTGATGTTTACTTGTCCCTTTTTGTAGGTAAATGCCTGTATAGTTGGGTGTAGAAGATTCAGGTCCAGAGAGATacacggcagccattttgtgcctCAATACATTGAAGATTATTACATGGGCAACTGTTACAAGTGAAATGTTTTTACAGTGCCTTTTTTTAGAGGTAGCAATACTGCAATACTATATATACAATGTTTCAAACCACACTCATTATGTCATTtattttggagcagtagcttgtTTCATGACAACTTATGGGCAGTTTTACCTGTGCAGTACCTGTATTCAGTAATTTATATGATTAATAACGTTGAAGGACTATGCTATGGTAAAATTAGAGTACACATTTGCCAAATTCTAGGTTACTAAAGAATTATCTGTGTTTTTTGAAAATGGTAATTTACTGTTGTTTTAGAATTTTAGAGGGATAGTACTCTGACTATTCTGAATCTGTACAGAATTGTCAATAGGAAATGTAAAAGATAAACCATTAAATTAGTTTAAAAACAAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950264.1 True 3105 mRNA 0.48 5 57760679 57784991

Neighbor

gene id symbol gene type direction distance location
LOC110494196 timeless coding upstream 2949 57723671 ~ 57757730 (+)
LOC110494199 LOC106565440 coding upstream 48646 57705420 ~ 57712033 (+)
LOC110494205 LOC106565438 coding upstream 63116 57694176 ~ 57697563 (+)
LOC110494203 LOC106565438 coding upstream 72491 57683845 ~ 57688188 (+)
LOC110494197 LOC106565496 coding upstream 95111 57655949 ~ 57665568 (+)
LOC118940480 NA coding downstream 118197 57903188 ~ 57918719 (+)
LOC110494214 LOC106565448 coding downstream 155912 57940903 ~ 57949816 (+)
LOC110494215 LOC106565449 coding downstream 196161 57981152 ~ 58034780 (+)
LOC110494218 LOC106565452 coding downstream 285074 58070065 ~ 58128942 (+)
LOC110494220 LOC106583293 coding downstream 412091 58135834 ~ 58249425 (+)
G1468176 NA non-coding upstream 36388 57724066 ~ 57724291 (+)
G1468161 NA non-coding upstream 46772 57713668 ~ 57713907 (+)
G1468149 NA non-coding upstream 55669 57704803 ~ 57705010 (+)
G1467338 NA non-coding upstream 66726 57693650 ~ 57693953 (+)
G1467315 NA non-coding upstream 111246 57649213 ~ 57649433 (+)
G1468256 NA non-coding downstream 71179 57856170 ~ 57856473 (+)
G1468270 NA non-coding downstream 103310 57888301 ~ 57888549 (+)
G1468273 NA non-coding downstream 107067 57892058 ~ 57892275 (+)
G1468278 NA non-coding downstream 113433 57898424 ~ 57898760 (+)
G1468334 NA non-coding downstream 204258 57989249 ~ 57989457 (+)
G1467219 NA other upstream 146379 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 212501 57498305 ~ 57548178 (+)
G1467159 LOC106565433 other upstream 277090 57478797 ~ 57554480 (+)
G1467031 NA other upstream 610336 57149303 ~ 57150343 (+)
G1467030 NA other upstream 612938 57146488 ~ 57147741 (+)
G1469076 NA other downstream 722306 58507297 ~ 58507885 (+)
G1470607 NA other downstream 2316901 60101892 ~ 60104007 (+)
G1471723 LOC100380707 other downstream 3187487 60972478 ~ 60999063 (+)
LOC110494283 LOC106565563 other downstream 3771328 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 4913512 62698503 ~ 62698815 (+)

Expression


Co-expression Network