LOC110494238 (LOC106565465)


Basic Information

Item Value
gene id LOC110494238
gene name LOC106565465
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 58716072 ~ 58728214 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110494238
ATGACTAAGGGAAAGCAAAAGGAAGTTGAGTTGAAAGAAGTTGAGTTGGATGAaCTGTCTCCAAGGACAGGCAAAGAACACCCACCCAGCTATGAAGAGGCTACTGCAGATTATGAGGAGATGCAAACCCAGTTCTCTTGGGATGACCAGGCCATCAGGAGGATCTTCATCAGAAAGGTCTATGCCATCCTGATGATCCAACTCTGTGTGACTGTGGCCATTGTTGCACTCTTCACATTCTGTGCACCAGTGAGGTTCTACATTCAGACACACCCCCTCCTGTACATGTGCTCCTACATGATGTTCTTGGCCACCTACATCGCATTGAACTGCTGTGGTGAACAAATCAGGAGACAGTTTCCCTGGAACCTTGTTCTGCTGGCTCTCTTTACTCTCAGCCTGGCCTGCATGATGGGCTTTGTGTCCAGCTTCTACAACACCAAGTCAGTGGTCCTGTGTCTAGGCATCACTGCTCTGGTGTGTATGTCTGTCACCATCTTCAGCTTCCAGACCAAGATTGACTTCACCTCCTACCAGGGAGTCCTGTTTGTCCTGACCATGGTCATGCTGTTCTGTTGCATCATACTCTCCATCGTCATCCCCTTCGGACATGTGTCCTGGTTACAAGCCATCTACGCTGTGATAGGAGCTATCCTCTTCACTCTGttTCTGGCGTTTGACACCCAGCTGCTGATAGGCAACAAGCGCTACACTATGAGTCCAGAGGAGTACGTCTTTGCCACCCTGAACCTCTACCTGGACATAGTAAACCTGTTCAGCTTCCTACTGTCATGTTTTGGAGGGGGCCGTGACTGATAAATCTGTCTGTTGGGAAACATAAAAACATCTATCAAACTAGATGTCTGTCTATTTCTCATTTGGACCACATGGGTGTTTTGGCTCCCTGCACTCCCTCAGCCCAATCTCCCTCAACCTTATAACTTAAAGTGGCTCTCCAGTttccttttcacctcatttaacaccCAATTATCtgaacaaaaggcacatctcaataggttGTCCAGTTATGTCCTACTCCTTGATATTTGTCTAAAAAAACACTATTTTTCTCAAAACGTTTTTGTTTTTACCCTTTAttgtgtgtactttactgtatttatacttgggatatcgcttttcaacagtaaaagtttaaaaaaataataactgTAGGACGTCTTTAAGAGCTTCTTTCATTTCTGTCTTCTTCTCAAACAACCCTGGTTCTtctgtgataaaaaaaaaataggataTTTCTCACGTCTCATAGTCTCTCGTCCTGACAGGCTGTTTACCTTTAAATTGAGCAGCTGGCCAGTGAACACACaagatttggttctgggtgccGAGATTGCATACCTCACCTTGTTTATGGCGAACAGTTGGAGAGCAGGTCAGCTTTGGGAAACAACAAACCTGGCCATTACTTAGAAGGGCACTTACAGTAAGTAAGTAGTGTGTTTGTCGTCTGCTCTGTGTTAGGAAACGAGGGTTACAGAAGCACATAACGATAAATAGCATTAACATTTTGAGTCACAGAATGTTGAGGACACTGATCTAATACTAAAACAGTATAATACTTTAACTTATTGTTCTTTCTAGTTCTTTTTAGTTTCTGGTTCTTGTCTGTCATCAACTCAGCACAAAGAAGACAAAAACAAGTAACCATTGATACTGTATCTTTCAAGCATGCTATCTTTCTGTAAATATACCTGTTTCCTGTTTTCCTAAACTATCATATTGATTCAGGAAATCTTTGGAACTCAGCAGGGTTGAGTTTAATTGTCTTAACTGTAGTTTTGATATGACAGAGTATCTTCAGATGCGTTTCCTAGATTACATTTTATTGTCAGTTATTTTGTACTTATTTTACAGATTCTGATCTGGATCAAATACATTGCTACGGTTCCAGCTTGGAACTACATACTGGAACTTCCAGGTATGGCAAGATAATATTTTCCAAACTACAATGTGATTAGAGTAGTTTCTATATGGTCATGAAGGCTCTGTATCTTGTACGGATTGCTTTTATGCACGTTTAGCTACACAGATACATACCCAGACACATACAGAATGACTTCAAATCCAAAGGGAAGAAGTTTCATGAACAATCCTATTAGATCCTACAATTGGTTTATCAGTTGCCAGTTCTATTGTGACTCCTCTGTAAAGGTTCATGTATAGCCTTTTGAATGCAGTATCATTATTACAGTGTCAAGGCTTGGTCAATAAAGTTGTGTTTGGATGTTACTATGATCAGCCAAAGGGAAAGGAGCTTACACCTTTTCGATGGATATCAATCACCTTGGTTACCACATTGAAAAAATGTATATTGAACAAACATAATACGATTCGCTCAACACTAAAATAA

Function

NR:

description
PREDICTED: protein lifeguard 2-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110494238 True 2371 mRNA 0.41 13 58716072 58728214

Neighbor

gene id symbol gene type direction distance location
LOC110494235 LOC106565463 coding upstream 8878 58696691 ~ 58707194 (+)
trnar-ucu-6 NA coding upstream 370408 58345575 ~ 58345664 (+)
LOC110494225 NA coding upstream 407052 58305759 ~ 58309020 (+)
LOC110494220 LOC106583293 coding upstream 466647 58135834 ~ 58249425 (+)
LOC110494218 LOC106565452 coding upstream 587130 58070065 ~ 58128942 (+)
LOC110494239 LOC106565466 coding downstream 104680 58832894 ~ 59011079 (+)
LOC100136832 lrrn1 coding downstream 482463 59210677 ~ 59245106 (+)
LOC110494244 NA coding downstream 530265 59258342 ~ 59266492 (+)
LOC110494246 LOC106565476 coding downstream 554585 59282799 ~ 59438025 (+)
LOC110494249 LOC106565477 coding downstream 733100 59461314 ~ 59465333 (+)
G1469113 NA non-coding upstream 179257 58536537 ~ 58536815 (+)
G1469111 NA non-coding upstream 181279 58534525 ~ 58534793 (+)
G1469087 NA non-coding upstream 198573 58517300 ~ 58517499 (+)
G1468596 NA non-coding upstream 222426 58493405 ~ 58493646 (+)
G1468593 NA non-coding upstream 226426 58489385 ~ 58489646 (+)
G1469217 NA non-coding downstream 133 58728347 ~ 58731402 (+)
G1469237 NA non-coding downstream 29296 58757510 ~ 58839482 (+)
G1469374 NA non-coding downstream 204799 58933013 ~ 58933298 (+)
G1469394 NA non-coding downstream 313362 59041576 ~ 59041883 (+)
G1469405 NA non-coding downstream 341060 59069274 ~ 59069515 (+)
G1469076 NA other upstream 208187 58507297 ~ 58507885 (+)
G1467219 NA other upstream 1101772 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 1167894 57498305 ~ 57548178 (+)
G1467159 LOC106565433 other upstream 1232483 57478797 ~ 57554480 (+)
G1467031 NA other upstream 1565729 57149303 ~ 57150343 (+)
G1470607 NA other downstream 1373678 60101892 ~ 60104007 (+)
G1471723 LOC100380707 other downstream 2244264 60972478 ~ 60999063 (+)
LOC110494283 LOC106565563 other downstream 2828105 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 3970289 62698503 ~ 62698815 (+)
G1473177 NA other downstream 3982125 62710339 ~ 62711136 (+)

Expression


Co-expression Network