LOC110494244


Basic Information

Item Value
gene id LOC110494244
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59258342 ~ 59266492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569161.2
actttttgccccactgtatatactgtactcgataccatctactatatcttgcctatgccgttctgtaccgtTCTGTACTCATTCATTattctttatgtacatattctttatccctttacacttgtgtgtataaggtagtagttttggaattgttaggttagattactcattggctattactgcattgtcggaactagaagcacaagcatttcgctacactcacattaacatctgctaaccatgtgtatgtgacaaataaaatgttattttattttactggTATGAGACTCTCACCACCTCTTTCCCTGTCAAAACAGACACCATCAAGCTGCTTGGGGTCACCTTCCAGAGGGATGGAGATGGCTCCGTCAGCTGagaggagaccatccgccatgTCCAAGACTGTGAATGAAGCGCATGATCCCTCACAATGACGGGTCAGGTCTGCCCTCGGCTGGTCTGGCGTCCTGGAAGTACAAGGACATCATGACCCACATCCGCTCCAAGGACACCATTGCACACCTTTGAGCCAGCTCAGCCGTGGACCCACAACAGGCATGGTTAAACATCAATCACCATGGCATTACAAACTTACAGAAAGAACTCTCATGGAAAGCTGTTCATAGTTGCCTCCCCACTAGGAAATGAATGTATAGACAGCACATAGCACATACAGAGAGCTGCCCCCATGGATGTACTGATACTGAAAACATCTACCACCTGTTTGCTGAGTGTACCATGGCCAGTCGGGTTTGGGCCCCGTTTGTTCTATCTCCCTCAACAGGTTGCTGACCATACCTCACTTGACAGCGAAGAACATCCTGAACGGTCCACCTGGTGGATGCACCACCACTCAGCTCCGCCAGCAGTGAAGGATCATCGGTACCATCAAGCAGGTCCTGTGGGAGAAAAAGTACAACAGGTTCTACCAGCAACAAACTGTGGAGCGAACGACCCTGAGGTGGAGGATCACCATCCTTCCAGCCGACCAAGACAAACCCCAGACCCGTCCTCCTGTCTTCATTTCCAGCCTCGCGGGACCAAAGGGGAATGCCACAAATGACCTCTGGGTCTAGGGCTCCTCTCCGCTCCCCTCTGCAGACTCAGCACTAGCCCAAGCACCAGTCCAGATCCCGGTTTCCAGCATAAACCCACCAAACGAGGTGTGGAGACACAACACCAAACCTTCACCCGGAGCGAGCGGACCACAGGGAAGTACCACCATTGACATCTCAGTCTAGGGCCCCTTTGTGTGTCTGCTTGCTCCTCCTGTTGTCCTTCCTCCCCTCTACAGACCCAGATCCCGACCCAGCACTTGCAGCAGCCCCAGTTCCCGGTACCTGGTTCCTTTTCCCCCCGGTCCCAGCACAATTCCCGGTCCAAGCCACAACACCAGCACCAACTCTGGGCACAGCCCCCACCAACCATAACTGCCAATTCAGCAATTGCCAGCCCAGCCCCCACCACGTCCTCCCCCAACAAAAAGACACAGACACATTGTAGCCAACTTTAGCCTGTTAGCtagggtgcttgactgccgttgtgaggtcagaacgctcggatcaaccctactcctcggccagagatctctgaacgctccgagagcaaAATGCTCAGAATTTACGAATGCCAAGAGCACACtttggcactccagattgaattaaCAAACACACCCAATTATTGATTTATTTAAATACTCCATATTTAGGCAAATTTAGTATGACAtctgggaacttttggcatactaactatatccatactatgaccgaTAAGCATTCTACATACTCAAATTACATCTCAAATAGTATGGTTAGAATGAGAATTCGAACACAGCTAATGTCTTTCGGGACTGCCTGTCGGGCACTACTTTCCCGCATTTTTGTTAACAACGGTGAGGGCAGGCGGGATCGAAGGACACTGGAATCCGGTACACATCAGGCGGGAGGCGGGATACGTAGCTAGCTAGGACATCAGTAGACAGTGTTCTGACATAGAAATTATATAAGTTAAGGACAAAAAGTTAAAACAACCACTCAATGTATTGTGACATCTGTGAAACTGAGAACAGGAAGGGGGGTCTCCTCACCCACAGAGGGAAAGAGCCATTAGGCTTGTTGTAGATTAGGAAACATGTTGAAGAATATGATAAGCAATGACCAGTTAGAGAAGACTTGTACAAAAGCATTCATTTATTGAGTGAACGCCAAATAATAGAAAGGGACAtttaacatgtgtgtgtgtgtattcaaagTAGATTAGAGAAATATTAACAATTCTAGGATGGAACATGTCTGTAAGGATTTGATCTTATAGACTAGACTGTGTCCCGAGAAGAGAAGTAAGTCAGGCACTGAGTAACCGCAGAGGTTTCCTGTTTAGAGCTCGACCTGTCAGTTGCAGACATATAGAGGAACCCAGTTTAACCGAAGGAGCTATCGAAGTTGAACATTGTGACAGAGTTAGATGAGAGGAGGGGCATTTATAAAGTGTATGTTATGACCAAATGTGAGGTAGAAAAGGCCATgtgcattgtatgatttttagagctctcgtgaataaacattttgactattTTAAGCTGGgactctgtctgtttcattcaaccaGAATCTTACAAACTCTGGGTTGCTGAGTAGTTTAATTGAAGTTCAGTTTAAGAACATTGAGAACAAAATTCTCGTAACATCTTCGCGCGGGTGCCTGTCGGGCACTGCTTTCCCACACTTGTGTTAATGCAGAGGGCAGGTGTTCGGCAGGCGGAAGTGAAGgacactgtgtgctagctagctagcatggagGTCTCCAGTACACAGCAGGCGGGAGCGACATCGGTAGtgtcatatatacatatattcatacacatagctcatatattatACAGCGCCAAACTTATCCGCTTGACTCCAGTCATTGCACGCACCCCTGTccaaacaggaagcaccctaCCCCCAGCCATAAACTGCCAGTTTCAGTTCCCCTTATCTCACGactcctggacacacacacactccacccccctctactggtcgggtgccaagagcagaggactctgctgtgcaccattggggctcctgctctggctggagcaggcccgcctccaactcttcgggaccagtcagaagaccaccacgacaagactccacctacattattctatgtataaaaactgTTGTAACCTTTGTTTAGGTCCCTTTTTCAGCTAACTCCATTTTGAACTATATGAATCAGGTCCGTGCACGTTAAACTGCTaggacaagatatctttgacCTTAATAAACTGCCTTTTTGCTATACTTgattccactctgtccagcgtccatgatttggtctcacTCTCCTGTAAGTTAATCATCAACAAAACttggtagcagaggatggtttaaACATCTGAATTCTATCTAGGACAAGTGGATGTGAGAGGAGACAAATCATTGGGTGCAAACCAAACGGAAGGGTGACCTCTCGCTAGGAGTATTCGGCTATTCAACTTGCCTCAGGAAACTGATCAGAGCGCACGACATAAAAGGTAAGCAGAGCCTGTTAAATCAAAAATCTGCATATTATATTTTAGTCAATTGCCAAATTTTGATCAGTAGTACTGAGCGTGAGTATGAATTGCTGTTAAATTGCTTTTAAGAAATCAAGGCATGGTTAAACAGATAATTAACTGAATCTGCATGTAAAAGATCCTATTAAATAAGTGGTATATTGTTTAATTGGTTGTGTTAGAGGTGTAGTTAATTAATAGATCGACTGAATCTGCATGTAAAAGATCCTATTACATAAGTTgtaaactgtttaattggttatGTTAGAGGTGTAGTCGAATAGATATAGTACATGTAAATTTAATTAATAGATCGACTGAATCTGCATGTAAAAGATCCTATTAAATAAGTTgtaaactgtttaattggttatGTTAGAGGTGTAGTCGAATAGATATAGTACATGTAAATTTGGCGTTCCACAAGACAGAGATCGAGAATGATGTGACCATTGCACATCAAACTATATTTAATATAACCAGATTTGACGTTCCGCGAATTTGTTGTGCCCAATTCAGACAAAACAGTTGTTGGGGAATGATTGCCATACTGTGAATAGATAAACGGTGTAATATTGACGGACACTGAGCTGAATACTGTTCTTACCAGTCGCCGAGCTGTGAATTAACCCAGCCGCCGTGCTAAAATATTGACTGTTTCTTTTTTCCCTCTTTCCGCTGTTGGTATTCCTACAGAGatagaattattctgacaattgttaTAGAATCGCCTAAATTCACTGATACATCGTTCCAAAAGGAAATCACCGAATCATTTCTAGAAAATACCTAAATaaatcgctgaacaaattcaaataaaataccggaGAAACACACACGTGGTTGGGCGTcacatactgataaccccctttgtatgcgagggtgggggtggaagagATAAGCCTGAGCCAGCACCGCAGTACATCCCTGGTCTCGACCAGGGACGggctaagcatacaacgatagaaataaacaccacatagtaaggattgaatatacctaaataacgcattatacacattatcagacgaactagataaaatgtctgcagccacCACCCCAATACCCTCCCCCACAGCAGTATATCCTGCAACAGCAACAGTCACAATGGGCTCAACGGGGCACCTATACCGGTCCACCCAGAGGGGTGTGCTACAACTGTGGAACTCCTGGCCATTATTCACGGGATTGTCAACAGCCACTCTCCACTCAGCAACACCTATGGAGAGGTAGGGGACGTGGAAGAGGAAGTGGGGGACACCCACCCCTGCAACACCCTCAACCAGGACCCAGTCACCTGCAGCAGTCAGCACCTGCATACAACCACCCCGGACCTACTCACATGCAACAGCAGCAGGGAGGATACAACCAACCGCAGTTCCAGGGAATGGCTGGGGACACCATGCCCTGGCCATGAAGATGCCCACCACCTGCGGCAGGAGGGAGAGCCAACATTTTCAACTACACACTGAACCAACTATGATATGTGAAGTTGAGGGTGTTCCCCATCAGTTCCTGGTAGACACAGGATGCACCTATTCTACTATCAAGTTCCCTCAAATGCTGTCATCTAATTCCATATCGGTGGTAGGGGTCACGGGATCACCTGAGGCTCAAAGCCGCACTATCCCTTTAACATTCTCCTGGGAGAAATGTCAGTTGAAACACCAGTTCCTGTACTGTCCAAAATGCCCGATCAACCTACTAGGACGGGACCTCTTATGCAAAATGGGGTGCACCATATATCTTACTGAAAGTGGAGTGGAAGTATCCACCAACCCTCCCTCTTCAACACCTGATCGCCCAGTAAGAATTATGATGATGCCACTCCTGCCGACGCCCACGCTGTCTGAAACCCAAGAAGTCCACTggctaaaatgcctacccacagggcctgccacccctcacatccagcttaagttcaaccaactgaaagctcaaatctacactctgcacccgtataagactccccaagctgagaCACTGATGACTGCCCCTACACTGaagactgggacgaagacatgatgcacctgaccccacctatcaggtgttgtaccattgtgtgtggcccagagggggtggcagcaccgaTCATCCTACGACCAAGGGacctccatgcacccctggcctggacggctgaagcCTCAACAGCCTTTGCACTCCTGAAaacagatctatcagcggcagcagcGCTGATTGCACCTGACTACAACATtaagttccatttggatgtttctgaaaAGGAAGGATTCACCTCGtccgtcctattccagaaacaagagggggagagaaaggtatTGATGTACCACTCCTCAaaacttgaccacattgaggtaggacagacaacatgttccagatacgttgctgcagtagcaaaagctattgaaaaaaaacagctcacctcgtgatgtGTCATCCATTGGAGATCCACACCCACCATGGCGTCGCTGCGTATCTGATGAGTAAAGAATAAACGTTCAGTGCTGAAAGAAAAACCAAGATCCAGAACTAATGCACACAGTCACATATCACGTTTGTGAACACCGACAAAAACATGGCAGATGCACTCAACGCAGAAGAAGGACTGCCCCACTCTTGTGCTGAAAGAGCGGCACAAGAACTAAAACTGAGACCAGACCTGAAGAATGAACCACTGACTAATCCCGACCAATGGCTGTACACTGATGGCTGCTGCTACAAAGGAGAAGAAGGAAACATAGCAGCCTATGCGGTGGTACAGCAACTCCCAGACGGCTCATATGTCACCCTTGAATCAGCCATCATCCTTCAACCAGCATCTGCccaattagctgaaatcatcggattgacgcaggcCCTCATCAGAGCAAAAGGAAAGACTGTGAACATGTACACAGACTCAGCGTATGCCCATGGAGCAGTCCACACGGATGGACCACAGTGGGTAAGAAGGAACTTCACTACAACAGGAAACCTCCCCatcaaacacaagacacagatggAGAAACTAATAGCATCGGTATCACTACCGGCGAAGGTAGCCATCATGAagtgtaaaggacaccagcaatTGAAAACCAGGATCAGTGCGGGAAATGATGCAGCCGATAAAGCAGCCAAGAAGGCTGGAGGTTACGCTCCCAAACAGATGATACTGCGACCACAGCTATCACAAACAGAGCATACCCAGCAAGACATAGTGGTGCTACAACACTCAGCAGGACCATATGAACACTCAGTCTGGGCACAGAAAGGGGCGACCAAAGGACCAGATGAACTATGGAGATGCCACGACGGCAGACTGGTAGCCCCAGCAAACCTTTGTCCAGAACTTTTACGAGAAGCACATGGCCCtacacacgaaggcaaactaaagaccctccaaaaggtctcgcacatctggtggcaccctcacatgaaagaaatgactgacttattttGTGAAGAATGCAACATATGTGGCAGccacaacccaaagaaaccatatcaaaaaccaatgggctcatacccagtacctaatgcatgttttcaggacattagtatagactacaccgacatgggccccgacAATGTATCTAAAGGCAAACGCTATCTCCTAGTTATggtagataggttctccaaatgggtagaaGCAATACCAACAGCAAAGGGGGATGCTAGGTCAGTCGttaagtggctacaaaccaaactaatacccaggtatggcatcccaagacaaatcaaatttgacaaatggctcaCATTTCAGTAACAAACACCTAtgacaggtggaagaaagatttggcataacacacagatttggatctgtgtacaggccccaatcTCAAGgtctggtggaacgtcaaaccaaaagttgaaagctaagatagctaaagtgTGTGCAGGTTCAAAGTTGACATGGGTTGAAGCCCTGCCTCTGGCGTTGATGGCCATGAGAGCCTCACCAGGAGCAGGCACCCATCTCTTTCCTCATGAGATAATGACTGGAAGAGTCATGCctggtccaccaagggagggaggtcatatgcccgcccttgatgtacaacaaattgtaatgtctgattatgtgaaaaaactgacggttctctctgcagcactctctacccaga
>TU1681195
aaaaatcctacaatgtgattttctgattttttttcttctcattttgtctgtcatagttgaagtgtacctatgatgaaaattacaggcctctcaactttttaagtgggagaacttgcacaattggtggctgactaaatactttttgccccactgtatatactgtactcgataccatctactatatcttgcctatgccgttctgtaccgtTCTGTAC
>TU1681198
CATCGTTCCAAAAGGAAATCACCGAATCATTTCTAGAAAATACCTAAATaaatcgctgaacaaattcaaataaaataccggaGAAACACACACGTGGTTGGGCGTcacatactgataaccccctttgtatgcgagggtgggggtggaagagATAAGCCTGAGCCAGCACCGCAGTACATCCCTGGTCTCGACCAGGGACGggctaagcatacaacgatagaaataaacaccac
>TU1681199
GAACTCCTGGCCATTATTCACGGGATTGTCAACAGCCACTCTCCACTCAGCAACACCTATGGAGAGGTAGGGGACGTGGAAGAGGAAGTGGGGGACACCCACCCCTGCAACACCCTCAACCAGGACCCAGTCACCTGCAGCAGTCAGCACCTGCATACAACCACCCCGGACCTACTCACATGCAACAGCAGCAGGGAGGATACAACCAACCGCAGTTCCAGGGAATGGCTGGGGACACCATGCCCTGGCCAT
>TU1681200
TCTTCAACACCTGATCGCCCAGTAAGAATTATGATGATGCCACTCCTGCCGACGCCCACGCTGTCTGAAACCCAAGAAGTCCACTggctaaaatgcctacccacagggcctgccacccctcacatccagcttaagttcaaccaactgaaagctcaaatctacactctgcacccgtataagactccccaagctgagaCACTGATGACTGCCCCTACACTGaagactgggacgaagacatgatgcacctgaccccacctatcaggtgttgtaccattgtgtgtggcccagagggggtggcagcaccgaTCATCCTACGACCAAGGGacctccatgcacccct

Function

NR:

description
uncharacterized protein LOC110528531

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569161.2 False 7635 mRNA 0.46 2 59258479 59266492
TU1681195 False 215 lncRNA 0.37 1 59258342 59258556
TU1681198 False 233 lncRNA 0.46 1 59263151 59263383
TU1681199 False 252 lncRNA 0.58 1 59263568 59263819
TU1681200 True 340 lncRNA 0.54 1 59264190 59264529

Neighbor

gene id symbol gene type direction distance location
LOC100136832 lrrn1 coding upstream 13373 59210677 ~ 59245106 (+)
LOC110494239 LOC106565466 coding upstream 247400 58832894 ~ 59011079 (+)
LOC110494238 LOC106565465 coding upstream 530265 58716072 ~ 58728214 (+)
LOC110494235 LOC106565463 coding upstream 551285 58696691 ~ 58707194 (+)
trnar-ucu-6 NA coding upstream 912815 58345575 ~ 58345664 (+)
LOC110494246 LOC106565476 coding downstream 16307 59282799 ~ 59438025 (+)
LOC110494249 LOC106565477 coding downstream 194822 59461314 ~ 59465333 (+)
LOC118940562 NA coding downstream 251088 59517580 ~ 59517708 (+)
LOC118940599 NA coding downstream 252346 59518838 ~ 59518979 (+)
LOC118940610 NA coding downstream 253617 59520109 ~ 59520250 (+)
G1469851 NA non-coding upstream 8975 59249205 ~ 59249504 (+)
G1469850 NA non-coding upstream 9930 59248265 ~ 59248549 (+)
G1469849 LOC106565475 non-coding upstream 10868 59247141 ~ 59247611 (+)
G1469761 NA non-coding upstream 140944 59117285 ~ 59117535 (+)
G1469749 NA non-coding upstream 145720 59112540 ~ 59112759 (+)
G1469871 NA non-coding downstream 138682 59405174 ~ 59405793 (+)
G1469990 NA non-coding downstream 184270 59450762 ~ 59451182 (+)
G1470277 NA non-coding downstream 229335 59495827 ~ 59496126 (+)
G1470290 NA non-coding downstream 239542 59506034 ~ 59506337 (+)
LOC118940527 NA non-coding downstream 346364 59612856 ~ 59613886 (+)
G1469076 NA other upstream 750594 58507297 ~ 58507885 (+)
G1467219 NA other upstream 1644179 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 1710301 57498305 ~ 57548178 (+)
G1467159 LOC106565433 other upstream 1774890 57478797 ~ 57554480 (+)
G1467031 NA other upstream 2108136 57149303 ~ 57150343 (+)
G1470607 NA other downstream 835400 60101892 ~ 60104007 (+)
G1471723 LOC100380707 other downstream 1705986 60972478 ~ 60999063 (+)
LOC110494283 LOC106565563 other downstream 2289827 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 3432011 62698503 ~ 62698815 (+)
G1473177 NA other downstream 3443847 62710339 ~ 62711136 (+)

Expression


Co-expression Network