LOC110494249 (LOC106565477)



Basic Information


Item Value
gene id LOC110494249
gene name LOC106565477
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59461314 ~ 59465333 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021569175.2
GCCGTCCAAAACGTGAGACTCATGTGACAGAGATAGGTCATTGCGAGCGAGAGTCAGGGGTTTATTTAACACGTAGCTCTGTCCTCCCCCACTTTCCCAACGCGCAACCAAGACTAGTGCATCTGCGGGACTCCCTCTTGACTGACTACGTGGAGATCTCCGGGACACTGCTCCCATTATGCGATATATAATCATAACAATGCAAATGTAAAATAGATTACTTATCTCTACAAATTGGAGGAAATACTTAAATATTTTTGTGAAAAATTTCAAGGACTATTTACTTTCATTCAATTTCATTTGCGTTCTTGAGTGAAAACATTGGGGGGAAAAAGCTTGCCCTTTCCTGCGTCATTTGGAGTAGCTTAAAGAGAATGGAAATGGAAAGGATTCCAAGTGCGCAACCCACCCCCAAGCACCAGCAGGCTGAGCTGCCTGACATGCAAGGGATGGATTTCCCTATGTATGTATACAAATCCCGTCGGGGAATGAAACGAGGAGATGATAGCAAGGAAACCTACAAACTGCCTCACCGACTTATCGAGAAGAAAAGGCGTGACAGGATAAACGAGTGCATCGCTCAGTTGAAAGATTTATTGCCCGAGCACCTGAAACTTACAACTCTTGGCCATCTGGAGAAGGCTGTGGTTTTGGAGCTCACACTTAAGCATGTGAAAGCTCTAACCACTCTACTGGAAAACCAGCAGCAGAAAATCCTCAGTCTGCAGAATGGCATGCAAATCgAGCAGTCCTCTCCCAGCcaggagaacagtgaggagatCTTCcgctcaggcttccatgtctgtGCCAAGGAGGTGCTGCAGTACCTGGTCAACCAGGAGGGTCACGGTGACCTTACACCCTCCCACATGGTCAACCACCTGCACAAGGTGGCCACTGAGGTCCTCCAGGGTCCTCCCTGTAGCCCCTGCAAACCCCGGTCTGAAGagaccaccatccactaccaacATCATCAGGCCCACAGGGAGAAGCCTGCAGACCAGCCCCCCAAGCCCAGTGAAGGCCATGGGAAGAACTGCGTTCCCGTCATCCAGCGGAGGTATGCCCATGCGGGCGGTGAGCAGAGCGGCAgcgatacagacacagacagcggctACGGTGGCGAGCAGGTTGAGCATCTGGCGTCGCATGCAGGGTATTACGGCCAGGAGAGACAGCTGAAGAGGGCACTGGGAGAAAAGAGGGCGTCATTTTGCATTAAGCAGGAAGATGAGGCGTGCCACAAACGCAGCCGGGTCGAGTCATCCGAGGACGAGTCTCTCTCAGGCGGAGagtcatcctcatcctcctccagcGGCCACGGCAGCTACATGAGCGCCTACTCCCCTCACCAGGCCCAACCTCATCCCCTTTGCATGCCCTTCTACCTCATCCCCCCCTCTGCCGCCGCCTATCTGCCCATGCTGGAGAAGTGCTGGTACTCAGGGGCCATGCCCATGATTTACCCTGGCCTGGGAGGCTCCGCGCAGGGCATGCCTAGTGACAGGCATGCCCCCTCTCCCTCGATCATGATGTCCCCCAGGGggcgctctccctctccccctaccgtAGCCCAAAGCCCCATGGACTCCCCGGCCTTCCTCCAAGTGTTAAAGCAGGTACTTCCCATGAACCTGGAAACCAAAGACTGAGAGACCACTGAGCACTTACACAGAAAAGTGTTATTGAACATAGACTGCTATGCTGAGAGGATACATGGAGGAGAACATGACCAGACAGTCAGAtcacccaccaccacccctctcccctcatcccagAAGTCAGAATACagaagggagacagatagagcgCATGCAGAAggtctggtcccagatcggtGAGGCATAATCCACAGCTGCAAACAGAAAAAGAGAATAAAAGAAAGAGGGAATGTGTGGATGGAAGACAGCTCAACCTGTTTCCTAATCCTCTCTGAATGTTTGACTTTATACCCCCACCAGAGTGCTGAGTGCAACATTGACCCCACTGatctggatacacacacacacacacacacacacccacacacacacacacacacacacacacacacacacacacacacacacacggttgaaTGTATAAATGTAAAAAAGTGGCAGTCCCGTAGATGTTGCTGCTGTTGAGGTTTCTACATGCTGTGGACACTGACAGGGCTCAGCTGTACACACACCGTCCTTGTAAACCATGTCACACCAAATGTCAATAGTCACCATTCACCCAAAGGTTGCTGTCTATTTACCTTAGGTCACCATTGCCATCACTGACACTGCGCTTTGCCCCATTCCCTATGACAACAACAAACATCCTGAGTGAAATAATTTCCTTACTGTATGGAGTTAGTGAGGCCATCATGTGACCATGTCAAGTTGGGAATTCACTGACAGTTTAGAGGGACTTTTTGTAATTATTGTTTATACTTCTTGTACATCTCTATTTTTGATACGTGTCCTAGCGCTCGAACCAGAGAGAAAGGTTGGACAGTCGTTTTACCACATAATAACTAATGTACATACTGTAGCCCTGCGCTGACCCTGATCTGCAATCTGACTCTGCTCAAGTCAAACCTGGAGTTTATCATCCTGTTGCCTTTTACTTGTGAAACACTGATAAAAGAAAACATCAGATGTTTATGAAATGTATTTGGGAGTTGGCGAGAAGTGAATGTATATGTTTTAACAGAAGATTAGTTTTCTATAGAAAGAGGTACTTTGATATTTTGGGAcctaccagaaagatgtttgatGTACATATTTTGTCTATAAATGTTGACATACATTATATAAGCGTATTAATAAAGTATTTTATCTGCTATGTT

Function


NR:

description
class E basic helix-loop-helix protein 40-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021569175.2 True 2818 mRNA 0.49 5 59461314 59465333

Neighbor


gene id symbol gene type direction distance location
LOC110494246 LOC106565476 coding upstream 23289 59282799 ~ 59438025 (+)
LOC110494244 NA coding upstream 194822 59258342 ~ 59266492 (+)
LOC100136832 lrrn1 coding upstream 216208 59210677 ~ 59245106 (+)
LOC110494239 LOC106565466 coding upstream 450235 58832894 ~ 59011079 (+)
LOC110494238 LOC106565465 coding upstream 733100 58716072 ~ 58728214 (+)
LOC118940562 NA coding downstream 52247 59517580 ~ 59517708 (+)
LOC118940599 NA coding downstream 53505 59518838 ~ 59518979 (+)
LOC118940610 NA coding downstream 54776 59520109 ~ 59520250 (+)
LOC118940552 NA coding downstream 56052 59521385 ~ 59521526 (+)
LOC118940621 NA coding downstream 57324 59522657 ~ 59522798 (+)
G1469990 NA non-coding upstream 10132 59450762 ~ 59451182 (+)
G1469871 NA non-coding upstream 55521 59405174 ~ 59405793 (+)
G1469851 NA non-coding upstream 211810 59249205 ~ 59249504 (+)
G1469850 NA non-coding upstream 212765 59248265 ~ 59248549 (+)
G1470277 NA non-coding downstream 30494 59495827 ~ 59496126 (+)
G1470290 NA non-coding downstream 40701 59506034 ~ 59506337 (+)
LOC118940527 NA non-coding downstream 147523 59612856 ~ 59613886 (+)
G1470301 NA non-coding downstream 148732 59614065 ~ 59618582 (+)
G1470331 NA non-coding downstream 173873 59639206 ~ 59639439 (+)
G1469076 NA other upstream 953429 58507297 ~ 58507885 (+)
G1467219 NA other upstream 1847014 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 1913136 57498305 ~ 57548178 (+)
G1467159 LOC106565433 other upstream 1977725 57478797 ~ 57554480 (+)
G1467031 NA other upstream 2310971 57149303 ~ 57150343 (+)
G1470607 NA other downstream 636559 60101892 ~ 60104007 (+)
G1471723 LOC100380707 other downstream 1507145 60972478 ~ 60999063 (+)
LOC110494283 LOC106565563 other downstream 2090986 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 3233170 62698503 ~ 62698815 (+)
G1473177 NA other downstream 3245006 62710339 ~ 62711136 (+)

Expression



Co-expression Network