XLOC_003333 (atp5f1b)


Basic Information

Item Value
gene id XLOC_003333
gene name atp5f1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 13207898 ~ 13213059 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006525
CGCATGCGCAGTGCGAGGTTCAAGCGGCACTATATATAAGCTCCTCAGCCTCTACCCGATTCCACCTTCAGCCATTTTAACAATGTTGGGAGCTGTGGGACGCTGCTGCACTGGGGCTTTGCAGGCTCTCAAGCCCGGGGTTCACCCCCTGAAGGCTCTCAACGGAGCTCCATCTCTGTTTTCACGCAGGGATTATGCTGCTCCTGCCGCTGCTGCTGCCGCCGCCAGCGGGCGTATTGTCGCGGTCATCGGTGCCGTTGTGGACGTCCAGTTCGACGAGGGTCTGCCACCCATTCTCAATGCCCTGGAAGTAGCCGGCCGTGATTCCAGGCTAGTCCTGGAGGTGGCTCAGCATTTGGGGGAGAACACTGTCCGCACAATCGCTATGGATGGTACCGAGGGACTGGTTCGTGGTCAGAAGGTTCTTGACACTGGTGCCCCCATCAGAATCCCTGTGGGACCTGAGACGCTTGGCAGGATCATGAATGTCATCGGTGAGCCCATTGACGAGAGAGGACCAATTTCCACAAAACAGACTGCCCCCATCCATGCGGAGGCTCCAGAATTCACAGACATGAGTGTCGAGCAGGAGATTCTGGTCACAGGAATCAAGGTCGTAGATCTGCTGGCACCCTATGCCAAGGGTGGCAAGATTGGTCTTTTCGGTGGTGCTGGTGTGGGAAAGACTGTGTTGATTATGGAGCTGATCAACAACGTGGCTAAGGCTCATGGTGGTTACTCCGTGTTTGCTGGTGTGGGAGAGAGGACCCGTGAGGGAAACGATCTCTACCATGAAATGATTGAGTCTGGTGTCATCAACCTGAAGGACACCACCTCAAAGGTGGCACTGGTGTACGGACAGATGAACGAGCCCCCAGGTGCCCGTGCCCGTGTGGCTTTGACAGGACTGACCGTTGCTGAGTATTTCCGTGATCAGGAGGGACAGGATGTGCTGCTCTTTATTGACAACATTTTCCGCTTCACCCAGGCTGGATCAGAGGTGTCTGCCCTTCTGGGTCGTATCCCCTCTGCTGTGGGTTATCAGCCAACTCTGGCCACTGACATGGGTACCATGCAGGAAAGAATCACAACCACCAAGAAGGGTTCAATCACATCTGTGCAGGCTATCTATGTGCCCGCTGATGACTTGACTGATCCAGCCCCTGCTACCACCTTTGCTCACTTGGATGCCACCACTGTGTTGTCTCGTGCCATCGCTGAGCTGGGTATCTACCCCGCTGTGGACCCCCTGGATTCCACCTCCCGTATCATGGACCCCAACATTGTGGGAACTGAGCATTATGATGTAGCCCGTGGTGTGCAGAAGATTCTCCAGGACTACAAGTCCCTGCAGGATATCATTGCTATTCTGGGTATGGATGAGTTGTCTGAGGAGGATAAGCTGACTGTGGCTCGTGCACGTAAGATCCAGAGGTTCCTGTCCCAGCCCTTCCAGGTTGCTGAGGTCTTCACTGGACACTTGGGCAAACTGGTGCCCCTTAAAGAGACCATCAAGGGCTTCAAGTCAATTCTTGGTGGTGAGTATGATGCTCTGCCTGAGCAGGCCTTCTACATGGTGGGCCCCATCGAGGAGGTTGTCCAGAAAGCAGAGAAACTGGCTGAGGAACATTCGTAAATGAGTCTGTTTAGTTGTCAGGGTGGGATGAAATGAAAGGCAGGAGCACTTGGTTTGTAATGTCACATTCAAAAAAACTAATTGTATCTTTATCGCTGGTCATTCTGAGGTTCTATTTAATGTTTCCGATTCATGAAGATGGAAATAAAAACTGTCTTTACCATGAACTGTCTGTTATGGTCTTGCTATTTACTTCCACTTTATAAATTGGTTCTCCAACTCTATAAAGA

Function

symbol description
atp5f1b Predicted to enable ATP binding activity and proton-transporting ATPase activity, rotational mechanism. Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in mitochondrial ATP synthesis coupled proton transport. Predicted to act upstream of or within ATP synthesis coupled proton transport. Predicted to be located in membrane. Predicted to be part of mitochondrial proton-transporting ATP synthase complex and proton-transporting ATP synthase complex, catalytic core F(1). Is expressed in brain; female organism; and liver. Orthologous to human ATP5F1B (ATP synthase F1 subunit beta).

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0042776 mitochondrial ATP synthesis coupled proton transport biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0005524 ATP binding molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-124 Predicted to enable ATP binding activity and proton-transporting ATPase activity, rotational mechanism. Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in mitochondrial ATP synthesis coupled proton transport. Predicted to act upstream of or within ATP synthesis coupled proton transport. Predicted to be located in membrane. Predicted to be part of mitochondrial proton-transporting ATP synthase complex and proton-transporting ATP synthase complex, catalytic core F(1). Is expressed in brain; female organism; and liver. Orthologous to human ATP5F1B (ATP synthase F1 subunit beta).

Ensembl:

ensembl_id ENSDARG00000070083

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006525 True 1866 mRNA 0.52 10 13207898 13213059

Neighbor

gene id symbol gene type direction distance location
XLOC_003332 NA coding upstream 13301 13193723 ~ 13194597 (+)
XLOC_003331 mknk1 coding upstream 18147 13176568 ~ 13189751 (+)
XLOC_003330 mob3c coding upstream 33421 13159988 ~ 13174477 (+)
XLOC_003329 CR847923.1 coding upstream 55513 13151919 ~ 13152385 (+)
XLOC_003328 zfyve9b coding upstream 119719 13058613 ~ 13088179 (+)
XLOC_003334 abcb11b coding downstream 10566 13223625 ~ 13272085 (+)
XLOC_003335 si:dkey-13m1.2 coding downstream 153714 13366773 ~ 13413971 (+)
XLOC_003336 homer3b coding downstream 210717 13423776 ~ 13505942 (+)
XLOC_003337 si:dkey-13m1.5 coding downstream 293994 13507053 ~ 13517846 (+)
XLOC_003338 arrdc2 coding downstream 311445 13524504 ~ 13533782 (+)
XLOC_003318 CR450764.6 misc upstream 495902 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 513635 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 522299 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 527870 12679732 ~ 12680028 (+)
XLOC_003314 CR450764.9 misc upstream 584047 12623555 ~ 12623851 (+)
XLOC_003369 CR854846.2 misc downstream 2909727 16122786 ~ 16123082 (+)
XLOC_003322 NA non-coding upstream 422839 12782215 ~ 12785059 (+)
XLOC_003319 NA non-coding upstream 489496 12718109 ~ 12718402 (+)
XLOC_003307 NA non-coding upstream 684869 12522770 ~ 12523029 (+)
XLOC_003341 CR555295.2 non-coding downstream 604510 13817569 ~ 13817684 (+)
XLOC_003342 AL928649.1 non-coding downstream 651787 13864846 ~ 13864964 (+)
XLOC_003344 CT956066.1 non-coding downstream 868481 14081540 ~ 14082177 (+)
XLOC_003353 BX571942.1 non-coding downstream 1218214 14431273 ~ 14640317 (+)
XLOC_003355 CU019562.3 non-coding downstream 1649227 14862286 ~ 14863542 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_07367270_07370738 ATP5B coding CI01000051 null 7366852 ~ 7370878 (+)
bowfin (Amia calva) AMCG00000991 atp5b,LOC102199207 coding CM030137.1 CM030137.1 11741361 ~ 11746181 (-)