LOC110494250 (LOC106565597)


Basic Information

Item Value
gene id LOC110494250
gene name LOC106565597
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59657801 ~ 59670107 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569176.2
ggagagcagagagagaagggtagggtCCCAGAAGTGAAAAAGAGGGATGGCCATATGCACCACTGCTCTACACTGCCTTACCGTGTGGGTTATTCTATTGGCTTCCACATAGGACGCATGATATCAAGGAAATAAAGCATGAGCAGtcgttagtgtgtagtggagggtacTGAGGCTAGCAATGGAGTGGTGTATGATAACAAACACTAACAGACCCACTCAGATGGCCAGCAGCGTGGGACCAGCCAGCAGCAGAAAGTGTAACGTGTGTCCCCGCTTCCACCAACACTGAGTGgactcagtcctctcctctttaccaaGGAGCAGGGCGGCAGAATGCCCAGTCCTGTCACCCTCCACAgtCTGTTGAAAATGCATTGGTCTCCGGAGCACGTGGCCCCCCTGTCCCAGTGGCCTGAGCAGCACCTAGATGtgtcctccaccacctccccccCCTCCGTCCACAAACACGATCCCTACGCCACCGCAGGTCGCTGCGGTTACACCCCTGCAGCCGGCTACCCCTGGGCCAGTGATGACATCTCGGCCCTCACTGCCTCCTCCTTGTTAAAACACTATGCCGAGAAGTACTCAGGTCTGGAGTTGCCCTATGAGAGACCTGCCCCAGGGGCATATTCAGAGCCTGGGTCTTTCCTGAAGAGTGAGGCTGAGCCGTGGTCCCTGGGGCAGGGAATGGAGTGTTACTCTGGGCTGGAGGCCCTGGCTGCAGGGGCCAAAGTGGGCTCAGTGTCAGTGGGCCTCACTGGCACGGGCAGTGTGACGGTAGTGAGCAGTAACTTGACCTCTGATCCCGGATATAGCAGCAGTGGCTCCTGTAATGGGCCTCCCTCTCAGGACTACCCACCCTCCTACAACAGCAGCTACCTCTCCTCTGGATACTACCCACAGACTGGCTCAGCACTTCCCCCAGCCTCTCTACACTCTCTGCATACCACCCCCACCTTGGTGCCCAGCTACAACCTTAACAATCCAGTCTACAACTACCTGCCAGGCTGCTACCCCCACCCCCAGACCAGCCTGGCATCTGGCTACAGCCACCCCAGTGCCTCCTACCTCCCCTCAGGGCTGAGCACCTCTACCTCCCTGACCCCCCGGCCCACCGTGGTGGGGAGCAGCTATGGATACCCCAGCCACAGCCTAGGGGCCAGCTCTGAAACAGGAGGGCCACTGAAACGCAAGGCCGTTGAgatggtggaagaggaggaggagggaggaggagagggggagggctcCCAGTACAGGAAGTACGGCAATGTCCATGGAAATGGCCACAGCAAGAGCCACTGCAACAGCTACGCCATGGCGGGCTCAGAAGGCCAGGCTTACAAGCCTGGCAAGCCATTGGTGTTGCCTCCTTATGGTGGGCAGAGGGAGTACAGCCCCTCCTCAGGCCTAGgtggggagagcaggggaggaggggAACACGGCTTCCCCCATCAGAGGCTGGCCATGAAGATGCCTGCGTCACGTGTGCGATCTGATGACCCCACTGGAGGACGCTAGGTCAGGCACTTGAGAAGACAGCTTTCTGGGGGTCCCTCCTTTGTATTGGCATTTGAAAACCAAGTAGAGTACTTACTCAGCCAATAACTGGGGGGAAACAATCGTTGGATTTTGCAAAGAAAGGTCATGTGATCTAACCAGTCAGGAGAGAAAATGGCAAATGACTTGTATCCTCCTCTTACATCTTTATCATTTTAATTATTTGATTTTCTCCAAAGAGTCAATGGGCACTTTGTCCTGTAGGGGTGTGGATTGgatg

Function

NR:

description
putative fidgetin-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569176.2 True 1783 mRNA 0.57 3 59657801 59670107

Neighbor

gene id symbol gene type direction distance location
LOC118940557 NA coding upstream 35315 59622361 ~ 59622486 (+)
LOC118940556 NA coding upstream 36365 59621304 ~ 59621436 (+)
LOC118940560 NA coding upstream 37432 59620247 ~ 59620369 (+)
LOC118940559 NA coding upstream 38490 59619189 ~ 59619311 (+)
LOC118940547 NA coding upstream 39743 59617917 ~ 59618058 (+)
LOC110494251 LOC106565596 coding downstream 187118 59857225 ~ 59887042 (+)
LOC110494255 LOC106565587 coding downstream 393143 60063250 ~ 60078437 (+)
LOC110494256 LOC106565588 coding downstream 408643 60078750 ~ 60095370 (+)
LOC110494259 LOC106565584 coding downstream 574678 60244785 ~ 60247910 (+)
srgap3 srgap3 coding downstream 595372 60265479 ~ 60383800 (+)
G1470341 NA non-coding upstream 9805 59647740 ~ 59647996 (+)
G1470335 NA non-coding upstream 13970 59643235 ~ 59643831 (+)
G1470331 NA non-coding upstream 18362 59639206 ~ 59639439 (+)
G1470301 NA non-coding upstream 39219 59614065 ~ 59618582 (+)
LOC118940527 NA non-coding upstream 43915 59612856 ~ 59613886 (+)
G1470383 LOC106583170 non-coding downstream 46502 59716609 ~ 59718373 (+)
G1470431 NA non-coding downstream 240301 59910408 ~ 59911460 (+)
G1470533 NA non-coding downstream 309953 59980060 ~ 59980665 (+)
G1470538 NA non-coding downstream 320897 59991004 ~ 59993399 (+)
G1470549 NA non-coding downstream 329955 60000062 ~ 60000432 (+)
G1469076 NA other upstream 1149916 58507297 ~ 58507885 (+)
G1467219 NA other upstream 2043501 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 2109623 57498305 ~ 57548178 (+)
G1467159 LOC106565433 other upstream 2174212 57478797 ~ 57554480 (+)
G1467031 NA other upstream 2507458 57149303 ~ 57150343 (+)
G1470607 NA other downstream 431785 60101892 ~ 60104007 (+)
G1471723 LOC100380707 other downstream 1302371 60972478 ~ 60999063 (+)
LOC110494283 LOC106565563 other downstream 1886212 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 3028396 62698503 ~ 62698815 (+)
G1473177 NA other downstream 3040232 62710339 ~ 62711136 (+)

Expression


Co-expression Network