LOC110494251 (LOC106565596)


Basic Information

Item Value
gene id LOC110494251
gene name LOC106565596
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59857225 ~ 59887042 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569177.2
ttggttgccagCAGTCATAAAAAAATACACAGAAGAAGACGAAGAGCTTGAAACAAAACATTCTTTCGACTGTATCAACTTCTGCAGCTCAACATACGCAAAATGACTTGTTTTATGAATTTCTTTACGTTTATTTTCAAGGTAGTAACGTTGCCACTACAATTAATGGAAGTGGTTGGCATATATGGCATCTACAAGCGTTTCTTTCCATTTCTAATTTACAAGATATCTTTCACCTACAACAAGAAAATGAACGACAAAAAGAAGGATCTTTTCAGCAATCTCTCAGAGTTCACCAAAGGCAATGGCCCGCTTCGCATTTTGGAGATCGGTTGCGGAAGCGGGGCTAACTTTGAATTCTACCCGTCTGGTTGCAAGGTGGTTTGCACCGACCCCAATCCTCACTTCGAGAAGTATCTACAAAAAAGTATGGCTGTCAATGATCACCTAACATTTGAAAGATTTGTGGTCGCTTCCGGAGAGGACATGGGGGCAGTGAAAGATGACTCTGTGGACGTTGTCGTCTGCACGCTGGTGCTGTGTTCTGTCAACAACATACCGCGAACATTGCAGGAGGCGCATCGCATATTGAGGCCTcataaACCTGCTCTCCGCCCCCAGTACAAGGAGATGAACGAGGGTGAACAACCAACATTTCAGGTATTTTGTCTTTGTACTTTGAGCTTATTGCTTGAACTTCGGGTCAAGGAATGTTATTGCTGGCGTGCAATGTCTATTTTTGTCTGCTTTCTTCCATTACAGCTTCAATtgtctggagcctggtgttgttgcAGCCAAGGCACTTTCACTCAGCtgggaccaggtttcagctgctgtgCAACATTGATGTCCTTCCTCCCAGAGATGTGCAACCATCCCCCATGCATGTATTTTTTAGAAAATCAGGACTTTTGCACAGAAAAGGCTATGGGCATTACATGTCCTGCTCCAATGCACAGGACAGAAAtatgctattttcaggtctctccaaagatgttagaccgggttcaagtccgggctctggctgggccactcaaggacattcagagacttgtcatgCCTGTGTGCTTagcgtcattgtcctgttggaaggtgaaccttctacCCAGtttcaggtcctgagcgctctggagcaggtttacatcaaggatctctgtacttttctctgttcatctttgccatGATCCGGAATAGTCTTCCAGTCCgtgcccctgaaaaacatccccacagcatgatgctgccaccactattctcccatcgccacatagaaactctggagctgaccaaggctcttctccacCGATTACCGTTTAGATTTTTTTAATTCATTTGctaaaatttccaaaaaactgttttcgctttgtcattgggtattgtgtgtagattgaggaggataaatatttattcaatctattttagaataaggctgcaaggtaacaaaatgtggaaaagtaaaagggtctgaattatttctgaatgcactgtatgatataccattttgaagCTCTGAGTCGGTACTTTTACCTAATGTAAAAAGTAACATTTAAAATGTTGGAACGTAACACCAAAAAGAGAAGGTGGTGGGGTCACAAATCAGGTGTTAAACTAGGTGAAAAGGTGACTTGATCACCACCAATATTCCAGTCCATCACCAGCATAGACCTCTGCAGTCTGCACACACTTCTTTCCACCACTACATGGACAGGTTAAGATGGTGTTTAATACAACAGCGCCGTGGCAGGTACCTGTAG
>XM_021569178.2
ttggttgccagCAGTCATAAAAAAATACACAGAAGAAGACGAAGAGCTTGAAACAAAACATTCTTTCGACTGTATCAACTTCTGCAGCTCAACATACGCAAAATGACTTGTTTTATGAATTTCTTTACGTTTATTTTCAAGGTAGTAACGTTGCCACTACAATTAATGGAAGTGGTTGGCATATATGGCATCTACAAGCGTTTCTTTCCATTTCTAATTTACAAGATATCTTTCACCTACAACAAGAAAATGAACGACAAAAAGAAGGATCTTTTCAGCAATCTCTCAGAGTTCACCAAAGGCAATGGCCCGCTTCGCATTTTGGAGATCGGTTGCGGAAGCGGGGCTAACTTTGAATTCTACCCGTCTGGTTGCAAGGTGGTTTGCACCGACCCCAATCCTCACTTCGAGAAGTATCTACAAAAAAGTATGGCTGTCAATGATCACCTAACATTTGAAAGATTTGTGGTCGCTTCCGGAGAGGACATGGGGGCAGTGAAAGATGACTCTGTGGACGTTGTCGTCTGCACGCTGGTGCTGTGTTCTGTCAACAACATACCGCGAACATTGCAGGAGGCGCATCGCATATTGAGGCCTcataaACCTGCTCTCCGCCCCCAGTACAAGGAGATGAACGAGGGTGAACAACCAACATTTCAGCTTCAATtgtctggagcctggtgttgttgcAGCCAAGGCACTTTCACTCAGCtgggaccaggtttcagctgctgtgCAACATTGATGTCCTTCCTCCCAGAGATGTGCAACCATCCCCCATGCATGTATTTTTTAGAAAATCAGGACTTTTGCACAGAAAAGGCTATGGGCATTACATGTCCTGCTCCAATGCACAGGACAGAAAtatgctattttcaggtctctccaaagatgttagaccgggttcaagtccgggctctggctgggccactcaaggacattcagagacttgtcatgCCTGTGTGCTTagcgtcattgtcctgttggaaggtgaaccttctacCCAGtttcaggtcctgagcgctctggagcaggtttacatcaaggatctctgtacttttctctgttcatctttgccatGATCCGGAATAGTCTTCCAGTCCgtgcccctgaaaaacatccccacagcatgatgctgccaccactattctcccatcgccacatagaaactctggagctgaccaaggctcttctccacCGATTACCGTTTAGATTTTTTTAATTCATTTGctaaaatttccaaaaaactgttttcgctttgtcattgggtattgtgtgtagattgaggaggataaatatttattcaatctattttagaataaggctgcaaggtaacaaaatgtggaaaagtaaaagggtctgaattatttctgaatgcactgtatgatataccattttgaagCTCTGAGTCGGTACTTTTACCTAATGTAAAAAGTAACATTTAAAATGTTGGAACGTAACACCAAAAAGAGAAGGTGGTGGGGTCACAAATCAGGTGTTAAACTAGGTGAAAAGGTGACTTGATCACCACCAATATTCCAGTCCATCACCAGCATAGACCTCTGCAGTCTGCACACACTTCTTTCCACCACTACATGGACAGGTTAAGATGGTGTTTAATACAACAGCGCCGTGGCAGGTACCTGTAG
>XM_021569179.2
gttgccagCAGTCATAAAAAAATACACAGAAGAAGACGAAGAGCTTGAAACAAAACATTCTTTCGACTGTATCAACTTCTGCAGCTCAACATACGCAAAATGACTTGTTTTATGAATTTCTTTACGTTTATTTTCAAGGTAGTAACGTTGCCACTACAATTAATGGAAGTGGTTGGCATATATGGCATCTACAAGCGTTTCTTTCCATTTCTAATTTACAAGATATCTTTCACCTACAACAAGAAAATGAACGACAAAAAGAAGGATCTTTTCAGCAATCTCTCAGAGTTCACCAAAGGCAATGGCCCGCTTCGCATTTTGGAGATCGGTTGCGGAAGCGGGGCTAACTTTGAATTCTACCCGTCTGGTTGCAAGGTGGTTTGCACCGACCCCAATCCTCACTTCGAGAAGTATCTACAAAAAAGTATGGCTGTCAATGATCACCTAACATTTGAAAGATTTGTGGTCGCTTCCGGAGAGGACATGGGGGCAGTGAAAGATGACTCTGTGGACGTTGTCGTCTGCACGCTGGTGCTGTGTTCTGTCAACAACATACCGCGAACATTGCAGGAGGCGCATCGCATATTGAGGCCTGGTGGTGCTCTGTACTTTTTAGAGCATGTAGTGGCAGACCCATCCTCTTGGACATACTTCTTCCAGCACGTCCTCCAGCCGATATGGTACTACTTTGGGGATGGATGTGAAGTAGTCAGGGCGACATGGAAACATCTGGAGACTGCCGGGTTCTCTGAGCTCAAACTGAGGCACATCGAGGCACCACTCAACTTCATGATCAAACCACATATTATAGGCTATGCTGTCAAGTAAAgtttgacaaaaaaaatcaaaaaagcaCTTGCACATCTGAGTTATCTCCTTGCAAGTGTGTGGGGAATAATGTGATGACGATTTAAAGAAAAAATAAACTTTTGTATCACTTGTTCCTATGCAGGCTTTAATATAATACGTCATAAGCAAGAGTGCGGGCTTCTCTTTTCTTTACAGTAAAGTTTGATAAAAATCTCTGGTCTTAGGCCTATCCCAGCAACTGTTTAAAAATAATTGTTGACACTTTTATGTATTCAGTGTAATTTTATAACccatattttaccaggtaagttgactcaGAACACGTTATTATTTAACTTGGGGAATAGCTAttggggatgaatgagccaattggaagctagGCATGATTAGATGGCCATGAcagtcagattgggaatttagccaggacactggggttaacatcACTggtcttacaataagtgccatgggagtcaggacacctgtttaacgtcccatccaaaagaccacaccctacacagggcaatgtccatAATCGCTGCCCTGGGATATTTTTATTGACCAGAGGatagagtgcctcctactggccctccaacacaacTTCCAGCAGCaactggtctcccatccagggaatGACCAgtccaaccctgcttagcttcagaggaaagccagcagcataccactaaGTGTTATTTTGGTTTTGTGCACTTTTCTTAAAAAGAGTTAAAAAAAAGTACTTAAAATGGCATATACAGGGAGTGTGTATTAATCTGAAGAGATCACCTCTGTGTAACCAAATGGGGCAACAAGCTGTTTTTTCTTTAGGGAGAGTGGAGGCTCAGAATGCTAGGAGAAGAGGACCGCTGTCATCTAGTGGATATAAACTCTAACCAATAGGCCACCACCTGATCAGATAAACTCTGGGTCTGAGACATGTTCCatagggagaatctcaattggatACTCaagtcctcctctctaccttctcaaAATCCATTGAATGAGAAAGCTAGATGTCCCGCCACTCAAACATTCTCCTCCAACAGGTtttgaggagagggagaaaggatgtGAGGAGTATGCAATTCTCCCATAGTTTAGTTTGGCATTTCCTCAATTCCTCCTGGCATTACAGTGTTTTCATAAAGTAttcttgacttttttcacattttgttgtgttacagtctgaatttaaaatggattaacttGAGATTTTGtgccactggcctacacataataccccataatgtcaaagtggaattgttttttgAAATTTGTTcacattaattaaaaatgaaaagct

Function

NR:

description
methyltransferase-like protein 7A isoform X3

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569177.2 False 1751 mRNA 0.44 2 59857225 59887042
XM_021569178.2 False 1649 mRNA 0.44 3 59857225 59887042
XM_021569179.2 True 2110 mRNA 0.42 2 59857228 59861016

Neighbor

gene id symbol gene type direction distance location
LOC110494250 LOC106565597 coding upstream 187118 59657801 ~ 59670107 (+)
LOC118940557 NA coding upstream 234739 59622361 ~ 59622486 (+)
LOC118940556 NA coding upstream 235789 59621304 ~ 59621436 (+)
LOC118940560 NA coding upstream 236856 59620247 ~ 59620369 (+)
LOC118940559 NA coding upstream 237914 59619189 ~ 59619311 (+)
LOC110494255 LOC106565587 coding downstream 176208 60063250 ~ 60078437 (+)
LOC110494256 LOC106565588 coding downstream 191708 60078750 ~ 60095370 (+)
LOC110494259 LOC106565584 coding downstream 357743 60244785 ~ 60247910 (+)
srgap3 srgap3 coding downstream 378437 60265479 ~ 60383800 (+)
rad18 rad18 coding downstream 546884 60433926 ~ 60508595 (+)
G1470383 LOC106583170 non-coding upstream 138852 59716609 ~ 59718373 (+)
G1470341 NA non-coding upstream 209229 59647740 ~ 59647996 (+)
G1470335 NA non-coding upstream 213394 59643235 ~ 59643831 (+)
G1470331 NA non-coding upstream 217786 59639206 ~ 59639439 (+)
G1470301 NA non-coding upstream 238643 59614065 ~ 59618582 (+)
G1470431 NA non-coding downstream 23366 59910408 ~ 59911460 (+)
G1470533 NA non-coding downstream 93018 59980060 ~ 59980665 (+)
G1470538 NA non-coding downstream 103962 59991004 ~ 59993399 (+)
G1470549 NA non-coding downstream 113020 60000062 ~ 60000432 (+)
G1470550 NA non-coding downstream 113922 60000964 ~ 60001173 (+)
G1469076 NA other upstream 1349340 58507297 ~ 58507885 (+)
G1467219 NA other upstream 2242925 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 2309047 57498305 ~ 57548178 (+)
G1467159 LOC106565433 other upstream 2373636 57478797 ~ 57554480 (+)
G1467031 NA other upstream 2706882 57149303 ~ 57150343 (+)
G1470607 NA other downstream 214850 60101892 ~ 60104007 (+)
G1471723 LOC100380707 other downstream 1085436 60972478 ~ 60999063 (+)
LOC110494283 LOC106565563 other downstream 1669277 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 2811461 62698503 ~ 62698815 (+)
G1473177 NA other downstream 2823297 62710339 ~ 62711136 (+)

Expression


Co-expression Network