LOC110494254 (LOC106565589)


Basic Information

Item Value
gene id LOC110494254
gene name LOC106565589
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 60008004 ~ 60028651 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569186.2
CACcatcccacttggttatgaaagCAGCATGAGACCCACTAGAGACAAGGTCAAGTTGTATGTTGGTTCAACACGCGGAGAATTGTCAGTGGCGCTTAGCTAAACTTCGAAAGGTGTAACGTTATGCCGCCATGAGAACGATTTGGTTTGTAACCGATAAATAATAGACGATTGATTATTCTATTTCCTTTTTATTGTGCCATTTGCTCCATTGATTGCAATCCGCTACAAAACATCGCAAGTTGAGCTGCGAGTGATAGCTTTCActtggggggtggggtgggattgTCAGGAGCGGTCCGGATGAGTTCGGAACAGTGTCTGGCTCTACAGCAGAAGGAGGTCAAGTCGGGATCGGACGAACGTGTGCAAGGGGAGATAATATCGAAAGATCAAGGCGGAATGGTAACCACAAAGGGAGCAGGTCTGAACCCCAATGCCAAAGTCTGGCAGGAGATCTCTGCGCCCCAGAGCCAAGTCCCAGATGAGGGCATAGAGGGCCCCTACTTGCTCCAGATGACCCCTAACTCTGCTGATGTCACTGAGGgTTACTCAGAGGTCCCTCCTACTGGGGCTAAGGGGTATGGCATGGGGTACTCGGACCCATCCTTGGACAGCAGTGCCCCTGCACCCACAGAGGGGGTATTGAACGGCATGGACCCCCCTGAGCTGGGATACCCTCTCTATGACCCTGTGACTGGTTCAGCAGTGGAGGAAAAGCAGCCGCTCTTAGAGGTGAGCATCAGAGAGTGTCTGAAGAAACAGATGGAGTTCTGCTTCTCCAGAGAGAATCTGTCCAAGGACTTGTACCTGATGTCCCAGATGGACAGTGACCAGTTTGTCCCCATCTGGACCATCGCCAGCATGGAGGGCGTCAAGGTTCTCACCACTGACATGGACCTGATTCTGGAGGTGCTACGAGCCTCGCCCATGGTGCAAGTTGACGAGAGTGGGAAAAAGGTTCGGCCCAACCACAAGCGCTGCATCATCATTCTGAGGGAGGTGCCCGAGACCACACCGGTGGAGGAAGTGGAGACCCTCTTTAAGAATGAAAACTGCCCTGAAGTGCTTAGTGTTGAATTTGCGGCCAATAACAACTGGTACATCACGTTCCGGTCGGACACTGATGCACAGCAGGCCCACAGATATCTAAGGGAAGAAGTGAAAACATTTCAGGGAAAACCCATCATGGCTCGTATCAAGGCCATCAACACATTCTTTGCAAAGAATGGCTACCGTAGCGTACTGGACTCCAGTGTGTACAGCCAGCAGGGCCAGTCTCAGTCCCAGTACACCTCTACACACCACTATATGCAGCAGGTGTTCAGCCCCCAGCAGCAgtaccctctctaccccctggTGCCCCCCACCTGGAACCCATCGCCTGCCCCTTATTTCGAGACCCCACTGGCCCCGTTCCCCAACAGTGGCTTTGTGAATGGCTTCAGCGCCCCTGGGAACTACAAGACTGGCACCTGTCCCCTGGGCCTCGGACGATCGCCCTTCAACAGCAACCGTGTCCCCCTCTATTCCAGAAAGTATGTAATCAATGCCTTCAGGAACCATGTGAAGAGCCAGCCCCAGCCATGTGATGAAACCCTACCTCCATCTGTGACCCCCGTACCCCCCCTGGTGGATGGCCTGTCTGGCCCCTCCAGCCCTCAGCCACCCCGCATGACTGGGGCTCCCCTGGTTAGCACCCCTGAACCTGGCCCTGCTCTCACCTCTTACTGCCTCAGGGACACCCTCCCACTGGCTTCAGAGGGGATGTCTAACGGAGACCTGGGCATTGCTGGCAGAAGCAGGAGAGGCAGCTACCGAGGGATGCGCAGAAGGAGAGAGGACGAGCGGCTCATGAGGCCCATCCCTCTGAGCGAGGTTAAGGTTCCACAGCCCAAGTTTGACTTGGCAACCTCCAACTTCCCTCCGTTGCCTGGGTGTACGGTCAGCATGCAGGGAGAAGAGCCCGTGCTGGAGACGCGCATGTCTGACGTGGTGCGGGGTGTTAAGGTGGTGACCAGTGACAAACCTGAGGTGAATAAGGAGTCTGTGGCCCCTCCTGTTAGTACCCAGGAGGGAACTGGGAGCGTGCCCAGTCCTGTCATGCCAGCCCTCAAACCCCCCACCCCTCTAGTTGTGCAGCCCCCTGTTCCAAGTGTTGCTCACCCGGTAGAGAAGCCTGAGCCTCATGTCCAAAGGGAGGCTGCTAGAACCCCCACACCACCCTCTTCTTTGCCAACCCCATCACAGCCCGCTGCTGCTACCAAACCCACCCCTATCCCCACCAGCAGTCAGTCCATCTCCACGACAACACCAGTCCCCGCTGCCCCCACTACCGCACCGGAGCCAAGGAAGCTGAGCTATGCTGAGATGTGCAAGCGGCCAGCCACCCAGCTCCCAGCCCCCAGCACCCCCAACCCTCCCATCACCTCTGCCAGCCAACCCCTGCAGGAGCTTCGGGTCAACAAGGCGGACGAGCCTGCCGCCTCCAGCAGCAGCAATGGCGATAGGCCAGAGAAACCTGAGGGGTCTGGAGAAGGCCTGTCCCTTCGTGACCCCCTGGGCACATACCGTTCGGGTAACGGCCCTTCCCGATCCGGAGGGATGGGCCTAAAGTACCGGGATCAACAGCGTGGTGCCTCTATGAGACGACGGATCTCCCCCCACAGCTGGGCTAGAGGGAGTGGGAAGGAACAGAACATTCCACCCCGGTCGCCGAAGTAGTTTAAACCACAACCAATAGACTAAAAGGAAAACAAACAGATCTATGTTAAGACagaaatatatgaatatatattatTGGATGAAAGAACATGTGCGTTCTTAATCTAGAAGACCCTCCTGGAGCTCAGTCGGACACACTGACCTTTGTTTGGGAAAACACTGAAAGCGGTAATCATTTTAAGTGGGGGTGAACATGAGTGTCACAAAACAAACTGAAGGACTTGTTTGAAAGAACAGTGAGATGCTGACATGTGGCCTCACCTTGGTTAGCTTGAAGAATGGGCCCTCCGCTAAATCGATGAATTTTATTTTTATGTGAAAGTGGGGTTTGAGAGAGGGGGGACAAATGTATGGTAAGTAAAGCCTTGTATCTCAAAAATACCAGTAGTTgcaaaataaaaaacaacagttGAGCTGTTAGCAAATCTAGTTTATATGCAACTAAGCAAAAGATGTGGATATCCACCGATATGACAACTGAGTTGATACTACTTCCTTATAAAAAATTATATTGAGGGAGGGGTTAGTAGGGTATTGTTCATTAACTGTGTGGAAATGTGCTTTTATGAAGGTTGGAAGCAAGAGATGGCCACATGGTTCAGGAGTTGTTCTGAGAGTTGGGAAGCCTGTCAAGTCAAGCTGCACATTCATTTAGGTGAAGAAACCGTCTTCGACATGTCTGCTTTTAGtctggaatttaaaaaaaaagctttAACCAGTGGGGAAATGTGAA
>XM_021569187.2
CCACcatcccacttggttatgaaagCAGCATGAGACCCACTAGAGACAAGGTCAAGTTGTATGTTGGTTCAACACGCGGAGAATTGTCAGTGGCGCTTAGCTAAACTTCGAAAGGTGTAACGTTATGCCGCCATGAGAACGATTTGGTTTGTAACCGATAAATAATAGACGATTGATTATTCTATTTCCTTTTTATTGTGCCATTTGCTCCATTGATTGCAATCCGCTACAAAACATCGCAAGTTGAGCTGCGAGTGATAGCTTTCActtggggggtggggtgggattgTCAGGAGCGGTCCGGATGAGTTCGGAACAGTGTCTGGCTCTACAGCAGAAGGAGGTCAAGTCGGGATCGGACGAACGTGTGCAAGGGGAGATAATATCGAAAGATCAAGGCGGAATGGTAACCACAAAGGGAGCAGGTCTGAACCCCAATGCCAAAGTCTGGCAGGAGATCTCTGCGCCCCAGAGCCAAGTCCCAGATGAGGGCATAGAGGGCCCCTACTTGCTCCAGATGACCCCTAACTCTGCTGATGTCACTGAGGgTTACTCAGAGGTCCCTCCTACTGGGGCTAAGGGGTATGGCATGGGGTACTCGGACCCATCCTTGGACAGCAGTGCCCCTGCACCCACAGAGGGGGTATTGAACGGCATGGACCCCCCTGAGCTGGGATACCCTCTCTATGACCCTGTGACTGGTTCAGCAGTGGAGGAAAAGCAGCCGCTCTTAGAGGTGAGCATCAGAGAGTGTCTGAAGAAACAGATGGAGTTCTGCTTCTCCAGAGAGAATCTGTCCAAGGACTTGTACCTGATGTCCCAGATGGACAGTGACCAGTTTGTCCCCATCTGGACCATCGCCAGCATGGAGGGCGTCAAGGTTCTCACCACTGACATGGACCTGATTCTGGAGGTGCTACGAGCCTCGCCCATGGTGCAAGTTGACGAGAGTGGGAAAAAGGTTCGGCCCAACCACAAGCGCTGCATCATCATTCTGAGGGAGGTGCCCGAGACCACACCGGTGGAGGAAGTGGAGACCCTCTTTAAGAATGAAAACTGCCCTGAAGTGCTTAGTGTTGAATTTGCGGCCAATAACAACTGGTACATCACGTTCCGGTCGGACACTGATGCACAGCAGGCCCACAGATATCTAAGGGAAGAAGTGAAAACATTTCAGGGAAAACCCATCATGGCTCGTATCAAGGCCATCAACACATTCTTTGCAAAGAATGGCTACCGTAGCGTACTGGACTCCAGTGTGTACAGCCAGCAGGGCCAGTCTCAGTCCCAGTACACCTCTACACACCACTATATGCAGCAGGTGTTCAGCCCCCAGCAGCAgtaccctctctaccccctggTGCCCCCCACCTGGAACCCATCGCCTGCCCCTTATTTCGAGACCCCACTGGCCCCGTTCCCCAACAGTGGCTTTGTGAATGGCTTCAGCGCCCCTGGGAACTACAAGACTGGCACCTGTCCCCTGGGCCTCGGACGATCGCCCTTCAACAGCAACCGGAACCATGTGAAGAGCCAGCCCCAGCCATGTGATGAAACCCTACCTCCATCTGTGACCCCCGTACCCCCCCTGGTGGATGGCCTGTCTGGCCCCTCCAGCCCTCAGCCACCCCGCATGACTGGGGCTCCCCTGGTTAGCACCCCTGAACCTGGCCCTGCTCTCACCTCTTACTGCCTCAGGGACACCCTCCCACTGGCTTCAGAGGGGATGTCTAACGGAGACCTGGGCATTGCTGGCAGAAGCAGGAGAGGCAGCTACCGAGGGATGCGCAGAAGGAGAGAGGACGAGCGGCTCATGAGGCCCATCCCTCTGAGCGAGGTTAAGGTTCCACAGCCCAAGTTTGACTTGGCAACCTCCAACTTCCCTCCGTTGCCTGGGTGTACGGTCAGCATGCAGGGAGAAGAGCCCGTGCTGGAGACGCGCATGTCTGACGTGGTGCGGGGTGTTAAGGTGGTGACCAGTGACAAACCTGAGGTGAATAAGGAGTCTGTGGCCCCTCCTGTTAGTACCCAGGAGGGAACTGGGAGCGTGCCCAGTCCTGTCATGCCAGCCCTCAAACCCCCCACCCCTCTAGTTGTGCAGCCCCCTGTTCCAAGTGTTGCTCACCCGGTAGAGAAGCCTGAGCCTCATGTCCAAAGGGAGGCTGCTAGAACCCCCACACCACCCTCTTCTTTGCCAACCCCATCACAGCCCGCTGCTGCTACCAAACCCACCCCTATCCCCACCAGCAGTCAGTCCATCTCCACGACAACACCAGTCCCCGCTGCCCCCACTACCGCACCGGAGCCAAGGAAGCTGAGCTATGCTGAGATGTGCAAGCGGCCAGCCACCCAGCTCCCAGCCCCCAGCACCCCCAACCCTCCCATCACCTCTGCCAGCCAACCCCTGCAGGAGCTTCGGGTCAACAAGGCGGACGAGCCTGCCGCCTCCAGCAGCAGCAATGGCGATAGGCCAGAGAAACCTGAGGGGTCTGGAGAAGGCCTGTCCCTTCGTGACCCCCTGGGCACATACCGTTCGGGTAACGGCCCTTCCCGATCCGGAGGGATGGGCCTAAAGTACCGGGATCAACAGCGTGGTGCCTCTATGAGACGACGGATCTCCCCCCACAGCTGGGCTAGAGGGAGTGGGAAGGAACAGAACATTCCACCCCGGTCGCCGAAGTAGTTTAAACCACAACCAATAGACTAAAAGGAAAACAAACAGATCTATGTTAAGACagaaatatatgaatatatattatTGGATGAAAGAACATGTGCGTTCTTAATCTAGAAGACCCTCCTGGAGCTCAGTCGGACACACTGACCTTTGTTTGGGAAAACACTGAAAGCGGTAATCATTTTAAGTGGGGGTGAACATGAGTGTCACAAAACAAACTGAAGGACTTGTTTGAAAGAACAGTGAGATGCTGACATGTGGCCTCACCTTGGTTAGCTTGAAGAATGGGCCCTCCGCTAAATCGATGAATTTTATTTTTATGTGAAAGTGGGGTTTGAGAGAGGGGGGACAAATGTATGGTAAGTAAAGCCTTGTATCTCAAAAATACCAGTAGTTgcaaaataaaaaacaacagttGAGCTGTTAGCAAATCTAGTTTATATGCAACTAAGCAAAAGATGTGGATATCCACCGATATGACAACTGAGTTGATACTACTTCCTTATAAAAAATTATATTGAGGGAGGGGTTAGTAGGGTATTGTTCATTAACTGTGTGGAAATGTGCTTTTATGAAGGTTGGAAGCAAGAGATGGCCACATGGTTCAGGAGTTGTTCTGAGAGTTGGGAAGCCTGTCAAGTCAAGCTGCACATTCATTTAGGTGAAGAAACCGTCTTCGACATGTCTGCTTTTAGtctggaatttaaaaaaaaagctttAACCAGTGGGGAAATGTGAA

Function

NR:

description
la-related protein 4-like isoform X2

GO: NA

KEGG:

id description
K18763 LARP4; la-related protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569186.2 False 3457 mRNA 0.53 17 60008004 60028650
XM_021569187.2 True 3416 mRNA 0.53 16 60008004 60028651
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110494253 LOC106565590 coding downstream 8264 59990975 ~ 59999740 (-)
LOC110493230 LOC106565592 coding downstream 17179 59911534 ~ 59990825 (-)
atf1 LOC106565593 coding downstream 102815 59878319 ~ 59905189 (-)
LOC110493229 LOC106565594 coding downstream 175469 59710337 ~ 59832535 (-)
LOC110494248 LOC106565478 coding downstream 516466 59478400 ~ 59491538 (-)
LOC110494257 LOC106565586 coding upstream 75382 60104033 ~ 60110249 (-)
LOC118940153 LOC106565586 coding upstream 163074 60191725 ~ 60193447 (-)
LOC110494258 LOC106565585 coding upstream 168969 60197620 ~ 60223564 (-)
thumpd3 thumpd3 coding upstream 207224 60235875 ~ 60244818 (-)
LOC118940555 NA coding upstream 228197 60256848 ~ 60257008 (-)
G1470932 NA non-coding downstream 3427 60002642 ~ 60004577 (-)
G1470937 NA non-coding downstream 96559 59910406 ~ 59911445 (-)
G1470934 NA non-coding downstream 97713 59905729 ~ 59910291 (-)
G1470824 NA non-coding downstream 301707 59706044 ~ 59706297 (-)
G1470805 NA non-coding downstream 327032 59680752 ~ 59680972 (-)
G1470998 NA non-coding upstream 1475 60030126 ~ 60030325 (-)
G1471009 NA non-coding upstream 21659 60050310 ~ 60050549 (-)
G1471016 NA non-coding upstream 29162 60057813 ~ 60058023 (-)
G1471029 NA non-coding upstream 69194 60097845 ~ 60098185 (-)
G1471038 NA non-coding upstream 85560 60114211 ~ 60114423 (-)
G1470802 NA other downstream 331310 59674541 ~ 59676694 (-)
hig1a hig1a other downstream 2775297 57229440 ~ 57233433 (-)
elmo2 LOC106565399 other downstream 3507679 56494856 ~ 56530610 (-)
dnai1.2 dnai1 other downstream 3840667 56130667 ~ 56167366 (-)
G1471219 srgap3 other upstream 347095 60375633 ~ 60376864 (-)
G1471564 NA other upstream 609529 60638180 ~ 60639335 (-)
ccdc174 NA other upstream 2217728 62246379 ~ 62250654 (-)
G1473866 NA other upstream 2701502 62730153 ~ 62730503 (-)

Expression

LOC110494254(LOC106565589) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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LOC110494254(LOC106565589) Expression in each Bioproject

Bar chart with 21 bars.
LOC110494254(LOC106565589) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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Co-expression Network