LOC110494256 (LOC106565588)


Basic Information

Item Value
gene id LOC110494256
gene name LOC106565588
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 60078750 ~ 60095370 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569189.2
AACTTATTTTGCGCATGCCCTGTACACATACCGCGCAGTCAGTGGCTTGAGATTTCTTTAAACAAGCTAACGTTAGTCAGGCAGCAGCGAATCATACAACAGCACATACCGGCTGAGAGACAACTCAAAGCAAGATAAGGGCACCATGGAGCTAAATGATGGAAACCTTCAGACCCTCACAGAATTTATGCGCAAAACTCTGGACCCAGATCCATCCGTAAGACGTCCAGCTGAAAAATTTCTTGAGTCAGTTGAAGGGAACCAGAATTACCCAATATTGCTGCTTACATTGTTGGAGAAATCCCAAGACAATGTGATCCGGGTGTGTGCAGCTGTCACCTTCAAAAATTACATCAAGAGGAACTGGCGCATAATTGAAGATGAACCCAACAAAATCTCAGATCCGGACCGAACCACGATCAAGGCCAACATTGTAAATTTGATGCTGAGCAGCCCTGAACAGATTCAGAAACAGTTGAGTGATGCCATCAGCATCATCGGTAGAGAGGACTTCCCTCAGAAATGGCCGgacctcctgacagagatggtgaccCGCTTCCAGAGCGGAGACTTCCACATCATTAACGGAGTGCTCCGAACCGCACACTCACTTTTCAAGAGGTATCGACATGAGTTTAAGTCAAATGAGCTATGGCTGGAGATTAAGCTGGTGTTGGACACATTTGCGAATCCACTGACTGAACTCTTCAAGGCCACCATTGAGCTGTGTCAGACCCATGCGACGGACATCAATGCTTTGAAGATCCTCTTCTCGTCCCTTACTCTGATCTCAAAGCTTTTCTACAGTCTCAACTTTCAGGACCTTCCAGAGTTATTTGAGGACAACATGGAGACCTGGATGTCTAATTTCCATAACTTGTTGACCTTGGATAACAAGCTACTACAAACAGATGATGAAGAGGAGGCAGGTCTTCTGGAGCTGCTCAAGTCTCAGATCTGTGACAACGCTGCTCTGTACGCCCAGAAGTACGATGAAGAATTCCAGCCTTACCTGCCTCGGTTTGTCACCGCTATCTGGAACCTGCTGGTCTCCACTGGCCAGGAGGTCAAGTATGACCTGCTTGTGAGCAATGCTATTCAGTTCCTGGCATCTGTGTGTGAAAGGCCCCATTACAAGCATCTGTTTGAGGACCAGAACACACTCACCAGCATCTGTGAGAAGGTCATTGTGCCCAACATGGAGTTCAGAAGCGCTGATGAGGAGGCCTTTGAGGATAACTCTGAGGAATATATCCGAAGAGATCTTGAAGGAtcagACATAGACACTCGGCGCAGGGCTGCTTGTGACTTGGTGAGAGGCCTGTGTAAGTTCTTTGAGGGCCCGGTCACAGCCATCTTTTCTGGCTATGTCAACTCCATGCTTGGGGAGTATGCCAAGAATCCAGGGGTGAACTGGAAGCACAAAGACGCTGCCATCTACCTGGTCACATCTCTGGCCTCAAAAGCCCAGACAGCAAAGCATGGTATCACGCAAGCTAACGAGTTGGTGAACCTTACAGAATTCTTTGTGAACCACATTCTCACAGACCTCAAATCCCAGAACGTCAATGAGTTCCCAGTGTTGAAGGCTGATGCCATCAAATATGTCATGATCTTCAGGAGTCAGCTGCCCAAAGAGCAGCTGCTGCAGGCTGTCCCTCTGCTGGTGGCCCACCTGCAGGCAGAGAGCACGGTAGAGCACACCTACGCTGCCCATGCACTGGAGAGACTCTTCACCATGAGGGGCCCCAACAACTCTACTCTTATCACTCCTGCAGAGATGgcccccttcacagaacagctgcTAAACAACCTGTTCAAGGCTCTGGCTCTGCCTGGCTCCTCAGAGAATGAATATATCATGAAAGCCATCATGCGCAGCTTCTCCCTCCTGCAGGAGGCCATCGTGTCTTACATCCCCACTCTGATTGGCCAGCTCACTCACAAGCTCCTGCTGGTCAGCAGGAACCCCAGCAAGCCTCACTTTAACCACTACCTGTTTGAGTCCCTGTGCCTGTCCATCCGTATCACCTGCAAGGCCAACACAACTACTGTGGGCAGCTTCGAGGAGGCCCTCTTCCCAGTCTTCACTGAGATCCTACAGAATGATGTACAGGAGTTTGTGCCGTACGTGTTCCAGGTGATGTCCCTTCTTCTGGAGATCCACACCAGCTCCATCCCCAACTCCTACATggcccttttcccccacctgctGCAGCCTGTACTGTGGGAACGCACTGGCAACATTCCCCCTCTGGTGCGCCTGCTTCAAGCATATCTGGAGAAGGGGGGAGCCACCATAGCCAGCTCTGCTGCTGACAAAATACCTGGCCTGCTAGGAGTCTTCCAGAAGCTCATAGCCTCCAAGGCCAATGACCACCAAGGTTTCTACCTGATGAACAGTATCATAGAGCACATGCCGACGGAGTCCATTGTTCAGTACAGGAAACAGATCTTCATCCTGCTCTTCCAGAGACTGCAGAGCTCCAAAACCACCAAGTTCATCAAGAGCTTCATGGTGTTTATCAATCTTTATGGTGTCAAGTACGGAGCCATTGCTCTGCAGGAGATTTTTGACAGCATACAGCCAAAGATGTTTGGCATGGTGCTGGAGAAGATAGTCATTCCAGAGGTGCAGAAAGTGTCTGGACCAGTGGAGAAGAAGATCTGTGCTGTGGGCATCACCAAGATCCTCACTGAGTGCCCTGCCATGATAGATACTGAGTACACCAAACTCTGGACCCCCCTGCTTCAGGCCCTCATTGGGCTATTTGAGCTACCAGAGGATGATAGCATCCCTGATGACGAGCACTTCATTGACATAGAGGACACACCCGGTTACCAGACTGCTTTCTCCCAGCTGGCCTTTGCTGGGAAGAAGGAGCACGACCCCATCGGCGATGTGGTCAGCAACCCCAAGATCCTGCTGGCGCAGTCTCTCCACAAGCTCTCTACTGCATGTCCCGGACGGGTACCCTCTATGCTGAGCACCAGCCTGAACGCTGAGGCCCTCCAGTACCTGCAGGGTTACCTGCAGGCTGCCTCTGTACAGCTGGTGTGAAGATGGACACAGAAGCTTCCTCACTGACGCATAAGACACCACACTGCACAATAACTGGGCACTGTCGCCCATGGGCCACACTGGGACTGACTCATCAGGATTGAATGGACAAAACGAAGACTGATCAATTGACTTCTCATGGTGGATACTTGGACAATGGGTCAACATGTTCATCTACGAATTGGGATTTTTAAGGGTTTTTAAATGGTGTTAAAAGAAATGGAAGAGCAAtagtttttttgtgggggggtggAGTTGTCTTTGTCCTTTATTGGCATGCTGTGCAGTTATGGAAGGTTGGCTTCACCAACACTCAACTTTGTGAATGTTATGCTTTGATATGACCAATATATCTGCTTGTTTGTCGATTTTGCCATAATAACGACCTGTCATTGAACATACATTGACAACCCCGACCAACATCGACAGCACTCTGGAGTTAACTGGCTGAATTGGACTTCATGACTCTTTGCAGAATCAAATGAGAAGTATTTTTTTTCTTTGTCCATTTTTTTCAATAGTTGGATTTCCATTGTTTTTACTCTTATGGAGGACTGGTGGTCATGACCTCAAAATATAGGACTTAAAATGTTTCTCTGCATGTAGTTGCGCCTAGCATTGTCTTGGTTATGTCTGGTCTTGGTGCAGAAACGGTCTATAAATGTGAGTAAAGAGGATCTTGTATAAAACCTGAGGGGTTTTGCACTTTCAGTGAAAGTCATTGTGTACAGCCTCTTGATTAGCTGTGGCACCCAAATAAAAGAAAATCACACTTAA

Function

NR:

description
exportin-2

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K18423 CSE1, CAS, XPO2; exportin-2 (importin alpha re-exporter)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569189.2 True 3838 mRNA 0.49 25 60078750 60095370
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110494255 LOC106565587 coding upstream 313 60063250 ~ 60078437 (+)
LOC110494251 LOC106565596 coding upstream 191708 59857225 ~ 59887042 (+)
LOC110494250 LOC106565597 coding upstream 408643 59657801 ~ 59670107 (+)
LOC118940557 NA coding upstream 456264 59622361 ~ 59622486 (+)
LOC118940556 NA coding upstream 457314 59621304 ~ 59621436 (+)
LOC110494259 LOC106565584 coding downstream 149415 60244785 ~ 60247910 (+)
srgap3 srgap3 coding downstream 170109 60265479 ~ 60383800 (+)
rad18 rad18 coding downstream 338556 60433926 ~ 60508595 (+)
LOC110494264 oxtr coding downstream 480308 60575678 ~ 60599614 (+)
LOC110494272 gpx1 coding downstream 874954 60970324 ~ 60971719 (+)
G1470595 NA non-coding upstream 17980 60060570 ~ 60060770 (+)
G1470586 NA non-coding upstream 28516 60049848 ~ 60050234 (+)
G1470585 NA non-coding upstream 29283 60049213 ~ 60049467 (+)
G1470575 NA non-coding upstream 39568 60038891 ~ 60039182 (+)
G1470557 LOC106565589 non-coding upstream 65228 60013230 ~ 60013522 (+)
G1470607 NA non-coding downstream 6848 60101892 ~ 60104007 (+)
G1470608 NA non-coding downstream 8658 60104028 ~ 60105171 (+)
G1470609 NA non-coding downstream 9986 60105356 ~ 60105582 (+)
G1470610 LOC106565586 non-coding downstream 10223 60105593 ~ 60106359 (+)
G1470611 LOC106565586 non-coding downstream 11762 60107132 ~ 60107911 (+)
G1469076 NA other upstream 1570865 58507297 ~ 58507885 (+)
G1467219 NA other upstream 2464450 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 2530572 57498305 ~ 57548178 (+)
G1467159 LOC106565433 other upstream 2595161 57478797 ~ 57554480 (+)
G1467031 NA other upstream 2928407 57149303 ~ 57150343 (+)
G1471723 LOC100380707 other downstream 877108 60972478 ~ 60999063 (+)
LOC110494283 LOC106565563 other downstream 1460949 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 2603133 62698503 ~ 62698815 (+)
G1473177 NA other downstream 2614969 62710339 ~ 62711136 (+)

Expression

LOC110494256(LOC106565588) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 75.
End of interactive chart.

LOC110494256(LOC106565588) Expression in each Bioproject

Bar chart with 21 bars.
LOC110494256(LOC106565588) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network