LOC110494259 (LOC106565584)


Basic Information

Item Value
gene id LOC110494259
gene name LOC106565584
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 60244785 ~ 60247910 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569193.2
TGGGTAACAGAAGTACTTCCGGGTTACAGCAACGAAAATAAAAAGTTCCGCGTTTCATATTCCTTTCTGATTTATCACTTGTTGTGGATTAATACAAATAGGGGGAAGAATGCCACGTTTAGTATCAGATGTGTGGAAGCATTTCACCCCAGCCATTAATGACGATGGGAAGACTATGTACATGTGCAACTACTGTACAAAGCAGTATGTAAAGAATGCCACAAAGTTGCAGGTGCATTTAACCAAATGCAAAAATGCAACATTATATCAAAGTGCACAAGAACCATTGTTCTGCCATACAATGGAAGACCACAGCCAGAAGAATGCCGATGAGTGCCTGGCTCGAGCAGTATATGCCACCGGCTCACCCCTCATGCTCAGTGAGAATGTGTACTGGAAGAGATGTTTCAATGTTATTTGCCCTGGATACTCTCCTCCAAACAGAGATGCTCTGTCTACTAATTTACTGGAAGCTGAGTTCAACAGAGTGCAAGGAAAGGTGAAGGAAACAATAGAGAAGGCAGACAGTGTTGCTGTTGTCTCCGAAGGGTGGTCAAATGTACAAGGGGATGGCATCATAAACTACATAGTCTCTACTCCTCTACCATTGGTTTTCAAGACGACAGACAaaaaggacaacacacacacgagcacgcaCATTGCTGATGAGCTGAAGGCTGTAATCAATGACGTTGGACCACAGAAGGTGTTTGCTGTTGTTACTGATAGTGCTGCAAACATGAAGGCTGCCTGGGCACAAGTGGAGGAGGCCTACCCTCACATTACACCTATTGGGTGCATGGTTCATGGGCTTAACCTACTCATCAAGGACATCATGAGTTTGCAAACAATGGAAACACTATACAAGACAGCCAAGCAAGTTGTACAGGATGTCAGGAGCAAAGAGGAAGTGTCAGCAACCTACAGCAataaaaatacaaagaaaaataacTCCACACTGAAACTGACCTGCAACATTAGATGGGCTGGGGTTGTCACCATGTACAGCAGCCTTCTGAAAGACAAGGAGTCTCTGCAAGAAATGGCAAGATCACAGTCTGTGGAAATTGAAATCTCCATCAGGAAAATACTGCTTGATGATgtgttttgggagagagtggttcGCAATCTTATGCTACTCTCACCGATCGCATTTGCCATTGATCAGATTGAAGGAGAGGATGCTGTCTTGTCAGATGTTCTCAGGCTTTTTGCTGATTTAAAAGACAAAATCAGCACAGCCCTCCCTTCAGCCTTGCTACTCAACACAGAGGAGACGGCAGTTGTTCGATTTCTGGAGCTGTGTGGAGAGTTTTGTATCAAGCCAATTCACGCTGCAGCATACATGCTGGATCCAAAGCATATTGGGAAACAAATACTTTCTGGAGAACAGATCAACAGCGCATACTATGTGATTTCTACCCTCTCACACCACCTCAATCTTGATGAGGGCAAAGTTCTGGCAAGTCTGGCAAAGTTTTCTACCAAGCAAGGCCTTTGGAATGGGGATGGGATATGGCAATCATGCCAGCACATTTCTCCCTACACCTGGTGGAAGGGTCTCTGTGCATCTGAGGCCCTGTCACCCATCGCCTCTGTGATCCTTCagatcccaccaacatcagcagCTTCTTTGCGCCTCAGAGCATTCTTTGGGAAAACCAAAACAAAGGTGGGCAACAGTTTAACAAACAACAGAGTGGAGAAATTGGTGGCTATTAGGGCGAACCTTAACCTTTTTGAGCCAGGAACAGAACTAGGGTCCAGCACACAGCTTCAGAGTGACACAAAGGAGGACATGGACATTAAATCAGAGTCTGAGTGAACAACTAAGGATGAAAAAAGGACAAAATATGAACAACGAGCTTAATAAGTGGACAGGTCATTTATTTTTACAATGTACAATGTTAGGCTACTGTTGGATTCTAGCTTGAAGTATACTTATTCATGTTACCATACCAGAACCATACCAGAACTTATTGATTACTTTACATGTATAAGGAATGTGTCAATGAAGGGTACAGAGGAACTCTGTGTGTGGAAAGTTACTGAGTGATATGGAAAGTTAccgagagggaaaaggggaagtgCAAAAAGTTGATATTCTGTTCAAATATGTTATCGTGGAATATTAATGTTCCtaaggagggaggcagagggcaACAGTAGTCTAGTTTTAGTacctgataaggcaggccagttTCTGCGGAACCAGGACCACGAGGGATGTGGAACTCAACTCGAGATAAGGTCAACAGTTGAAGACAAAATACACTGCTGGGAGGTGGGCCACAGAGGCCCACCATGAAGGCCATCTGAACACAGTCCTATCTCACGCACACATATTTCCAAGCCCATGAGGGTCCTAGACTTAGGCAGGGCCATGACAATACCAGTAAGAGGAATCTACTATGTTTCTGCCTAACAACAGACACTACTTTCCTATCTTAGACATGCAAGGAGATGACTCTGCCTAGTTGGAAGGTATAAAGATGTGCTTGTGTGACTTGTATGTTGTCTTTGCAGCTGTATGAaccagtgggtgaataaacttggtttgagctttt
>XM_021569192.2
ttattattatattatcatgGATAAAGTTGCTTAGCGAACATTATATAGCTGTATTTACTAGCTTGTATAGCAGCTGGTGGCAAAAAGGTACATTTCCGGTAAATTTCCATGAAAATTTTCAACGGACTGTTTGTAATGTTGGGAATTTTAGAAGCACTTCTATATTTTTTATGTGGAGAAACACGGTACTCTTTTTGAAAGGAGCCATTCTTTATACTTCAGCAATACATATATTATATTTGCTACATCAGGGCAGGATCCCATTGTTAACGATATCCTCCCTAGTGAGTAAGGGGGAAGAATGCCACGTTTAGTATCAGATGTGTGGAAGCATTTCACCCCAGCCATTAATGACGATGGGAAGACTATGTACATGTGCAACTACTGTACAAAGCAGTATGTAAAGAATGCCACAAAGTTGCAGGTGCATTTAACCAAATGCAAAAATGCAACATTATATCAAAGTGCACAAGAACCATTGTTCTGCCATACAATGGAAGACCACAGCCAGAAGAATGCCGATGAGTGCCTGGCTCGAGCAGTATATGCCACCGGCTCACCCCTCATGCTCAGTGAGAATGTGTACTGGAAGAGATGTTTCAATGTTATTTGCCCTGGATACTCTCCTCCAAACAGAGATGCTCTGTCTACTAATTTACTGGAAGCTGAGTTCAACAGAGTGCAAGGAAAGGTGAAGGAAACAATAGAGAAGGCAGACAGTGTTGCTGTTGTCTCCGAAGGGTGGTCAAATGTACAAGGGGATGGCATCATAAACTACATAGTCTCTACTCCTCTACCATTGGTTTTCAAGACGACAGACAaaaaggacaacacacacacgagcacgcaCATTGCTGATGAGCTGAAGGCTGTAATCAATGACGTTGGACCACAGAAGGTGTTTGCTGTTGTTACTGATAGTGCTGCAAACATGAAGGCTGCCTGGGCACAAGTGGAGGAGGCCTACCCTCACATTACACCTATTGGGTGCATGGTTCATGGGCTTAACCTACTCATCAAGGACATCATGAGTTTGCAAACAATGGAAACACTATACAAGACAGCCAAGCAAGTTGTACAGGATGTCAGGAGCAAAGAGGAAGTGTCAGCAACCTACAGCAataaaaatacaaagaaaaataacTCCACACTGAAACTGACCTGCAACATTAGATGGGCTGGGGTTGTCACCATGTACAGCAGCCTTCTGAAAGACAAGGAGTCTCTGCAAGAAATGGCAAGATCACAGTCTGTGGAAATTGAAATCTCCATCAGGAAAATACTGCTTGATGATgtgttttgggagagagtggttcGCAATCTTATGCTACTCTCACCGATCGCATTTGCCATTGATCAGATTGAAGGAGAGGATGCTGTCTTGTCAGATGTTCTCAGGCTTTTTGCTGATTTAAAAGACAAAATCAGCACAGCCCTCCCTTCAGCCTTGCTACTCAACACAGAGGAGACGGCAGTTGTTCGATTTCTGGAGCTGTGTGGAGAGTTTTGTATCAAGCCAATTCACGCTGCAGCATACATGCTGGATCCAAAGCATATTGGGAAACAAATACTTTCTGGAGAACAGATCAACAGCGCATACTATGTGATTTCTACCCTCTCACACCACCTCAATCTTGATGAGGGCAAAGTTCTGGCAAGTCTGGCAAAGTTTTCTACCAAGCAAGGCCTTTGGAATGGGGATGGGATATGGCAATCATGCCAGCACATTTCTCCCTACACCTGGTGGAAGGGTCTCTGTGCATCTGAGGCCCTGTCACCCATCGCCTCTGTGATCCTTCagatcccaccaacatcagcagCTTCTTTGCGCCTCAGAGCATTCTTTGGGAAAACCAAAACAAAGGTGGGCAACAGTTTAACAAACAACAGAGTGGAGAAATTGGTGGCTATTAGGGCGAACCTTAACCTTTTTGAGCCAGGAACAGAACTAGGGTCCAGCACACAGCTTCAGAGTGACACAAAGGAGGACATGGACATTAAATCAGAGTCTGAGTGAACAACTAAGGATGAAAAAAGGACAAAATATGAACAACGAGCTTAATAAGTGGACAGGTCATTTATTTTTACAATGTACAATGTTAGGCTACTGTTGGATTCTAGCTTGAAGTATACTTATTCATGTTACCATACCAGAACCATACCAGAACTTATTGATTACTTTACATGTATAAGGAATGTGTCAATGAAGGGTACAGAGGAACTCTGTGTGTGGAAAGTTACTGAGTGATATGGAAAGTTAccgagagggaaaaggggaagtgCAAAAAGTTGATATTCTGTTCAAATATGTTATCGTGGAATATTAATGTTCCtaaggagggaggcagagggcaACAGTAGTCTAGTTTTAGTacctgataaggcaggccagttTCTGCGGAACCAGGACCACGAGGGATGTGGAACTCAACTCGAGATAAGGTCAACAGTTGAAGACAAAATACACTGCTGGGAGGTGGGCCACAGAGGCCCACCATGAAGGCCATCTGAACACAGTCCTATCTCACGCACACATATTTCCAAGCCCATGAGGGTCCTAGACTTAGGCAGGGCCATGACAATACCAGTAAGAGGAATCTACTATGTTTCTGCCTAACAACAGACACTACTTTCCTATCTTAGACATGCAAGGAGATGACTCTGCCTAGTTGGAAGGTATAAAGATGTGCTTGTGTGACTTGTATGTTGTCTTTGCAGCTGTATGAaccagtgggtgaataaacttggtttgagctttt
>TU1682097
ATGGCAATCATGCCAGCACATTTCTCCCTACACCTGGTGGAAGGGTCTCTGTGCATCTGAGGCCCTGTCACCCATCGCCTCTGTGATCCTTCagatcccaccaacatcagcagCTTCTTTGCGCCTCAGAGCATTCTTTGGGAAAACCAAAACAAAGGTGGGCAACAGTTTAACAAACAACAGAGTGGAGAAATTGGTGGCTATTAGGGCGAACCTTAACCTTTTTGAGCCAGGAACAGAACTAGGGTCCAGCACACAGCTTCAGAGTGACACAAAGGAGGACATGGACATTAAATCAGAGTCTGAGTGAACAACTAAGGATGAAAAAAGGACAAAATATGAACAACGAGCTTAATAAGTGGACAGGTCATTTATTTTTACAATGTACAATGTTAGGCTACTGTTGGATTCTAGCTTGAAGTATACTTATTCATGTTACCATACCAGAACCATACCAGAACTTATTGATTACTTTACATGTATAAGGAATGTGTCAATGAAGGGTACAGAGGAACTCTGTGTGTGGAAAGTTACTGAGTGATATGGAAAGTTAccgagagggaaaaggggaagtgCAAAAAGTTGATATTCTGTTCAAATATGTTATCGTGGAATATTAATGTTCCtaaggagggaggcagagggcaACAGTAGTCTAGTTTTAGTacctgataaggcaggccagttTCTGCGGAACCAGGACCACGAGGGATGTGGAACTCAACTCGAGATAAGGTCAACAGTTGAAGACAAAATACACTGCTGGGAGGTGGGCCACAGAGGCCCACCATGAAGGCCATCTGAACACAGTCCTATCTCACGCACACATATTTCCAAGCCCATGAGGGTCCTAGACTTAGGCAGGGCCATGACAATACCAGTAAGAGGAATCTACTATGTTTCTGCCTAACAACAGACACTACTTTCCTATCTTAGACATGCAAGGAGATGACTCTGCCTAGTTGGAAGGTATAAAGATGTGCTTGTGTGACTTGTATGTTGTCTTTGCAGCTGTATGAaccagtg

Function

NR:

description
uncharacterized protein LOC110494259

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569193.2 False 2567 mRNA 0.44 2 60244785 60247910
XM_021569192.2 False 2759 mRNA 0.43 2 60244917 60247910
TU1682097 True 1026 lncRNA 0.44 1 60246859 60247884

Neighbor

gene id symbol gene type direction distance location
LOC110494256 LOC106565588 coding upstream 149415 60078750 ~ 60095370 (+)
LOC110494255 LOC106565587 coding upstream 166348 60063250 ~ 60078437 (+)
LOC110494251 LOC106565596 coding upstream 357743 59857225 ~ 59887042 (+)
LOC110494250 LOC106565597 coding upstream 574678 59657801 ~ 59670107 (+)
LOC118940557 NA coding upstream 622299 59622361 ~ 59622486 (+)
srgap3 srgap3 coding downstream 17569 60265479 ~ 60383800 (+)
rad18 rad18 coding downstream 186016 60433926 ~ 60508595 (+)
LOC110494264 oxtr coding downstream 327768 60575678 ~ 60599614 (+)
LOC110494272 gpx1 coding downstream 722414 60970324 ~ 60971719 (+)
LOC110494274 brk1 coding downstream 766815 61014725 ~ 61019187 (+)
G1470666 LOC106565586 non-coding upstream 51566 60192910 ~ 60193219 (+)
G1470665 LOC106565586 non-coding upstream 51885 60192641 ~ 60192900 (+)
G1470664 NA non-coding upstream 52377 60192175 ~ 60192408 (+)
G1470655 NA non-coding upstream 67028 60177556 ~ 60177757 (+)
G1470652 NA non-coding upstream 71633 60172943 ~ 60173152 (+)
G1470701 NA non-coding downstream 2942 60250852 ~ 60251056 (+)
G1470689 NA non-coding downstream 12592 60260502 ~ 60261000 (+)
G1470713 NA non-coding downstream 16810 60264720 ~ 60264923 (+)
G1470773 NA non-coding downstream 119241 60367151 ~ 60367406 (+)
G1470607 NA other upstream 140778 60101892 ~ 60104007 (+)
G1469076 NA other upstream 1736900 58507297 ~ 58507885 (+)
G1467219 NA other upstream 2630485 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 2696607 57498305 ~ 57548178 (+)
G1467159 LOC106565433 other upstream 2761196 57478797 ~ 57554480 (+)
G1471723 LOC100380707 other downstream 724568 60972478 ~ 60999063 (+)
LOC110494283 LOC106565563 other downstream 1308409 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 2450593 62698503 ~ 62698815 (+)
G1473177 NA other downstream 2462429 62710339 ~ 62711136 (+)
G1474159 NA other downstream 2969038 63216948 ~ 63217594 (+)

Expression


Co-expression Network