rad18 (rad18)


Basic Information

Item Value
gene id rad18
gene name rad18
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 60433926 ~ 60508595 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569200.2
AGCTACTCCGCCCAACCCGTACATTTATGTGTGCCCATTGGTCACGAAGAGCAAACCGAGACAGGAATTGACATGATCCTCCCGGAAGGGTGCATTTGAGAACTATCACCATGGCCAATTTTAATGAAGCGGATTTACCACCAAATCTGACTTGCCTCAAAAATGTTGATACCCTTCTTCGATGTCCCATTTGTTTTGAGTTCCTGAGTATCGCAGTGATGACAAAATGCTCTCACAACTTCTGCTCTTTGTGCATAAGAACATTTATGTCCTACAAGTTGCAATGTCCAGTGTGTAATTCACCTACAACAGAACAGGACCTAAGAAACAACCGGATACTGGATGACCTGGTCACAAACTTTCAAACTGCAAGGCAGAAGTTGTCAAAAGCTCATTTCGACTCGCCTCCATTATCCCCGGAGACCCCAGCCTCTACTGTCAAGtgtaaaacacacagacagaccaggggCCCCAAGAAGAATGGCTCCATCCTCAGTCACTTTTTCCAGAGGGGGCCAATCACTTCCACATCATCTCTCACTACAGAGGCCCCGCCATCACTTCATACACAAACTGTGAAAGTAGACCCTGGTCATCAGGTCTCTGTGAATGAGGAGcccatggaggaggagataccGGCCCAGGTGCTGGTGTCTGTGAAGATTGAGAAGATGGACATCTCCATGACAGGGCTGTCGTCTCTGGCTGACTCGCCGTCCACATCACAGGACATGAAGCCTGTAGTTAAAGtGGAGTGTCCTGTGTGTTCTGTGGGCATCTCTGAACAGCTCATCAACAAGCACCTGGACACCTGTCTGACCCGAGGGGAGAAGAAGGAGAGCCTTAGGAGCTCCCTAGGTGCTAAGAGGAGGCCGATGGGGAAGCTGGTGTACACACTGCTGTCCATGCAGGAGCTGAAGAGGAGGCTGAAGGAGTGCCACCTCTCTGTCCAGGGTAACAAAGATCAGCTGGTCAGGAGGCACCAGGACTTTGTACACTTCTACAATGCCCAGTGTGACGCCCTGGAACCGAAATCAGCCAAAGACATTGCCAATGAAGTGGAGGCCAACGAGAAGGCCAGGAACCAACTTCAGGGGAAAACCAAACGTGTCATGGACTTCTCAAAGAATCAAAGTGTGGAGAAGATCGACGAGATGCATTCAACTTACAGGAAGCAGCATAACAGTGAGTTCTCCCGCCTTATCGCCCAGGTCCGGGGTCGCCTGGAAAAGACCAGGAAGAGGGAGATGAAACAGAAAGTGAGGGatgagggagtagaggaggaccGGAGAGCGGGCTCCAGCTCTGCAGATAAAGCAGCAGAACAGGAACAGAGGGATCCCAGTCCCAGTGACTCAGAGGCCTTCTGCATATTGATGACATCACCAGTACCGGAGCCCTCTGAGGAGCAGCAGCCTTCTGTTGTAGAGGTCATTTCCAGGTCACCCAGCTGTCTCAGTGACGTGTCCATCAGCAGtTCCATCTCCGACGTCTTCGCTGACAGATGCTATGAAGTTTCAGAGAATGCCTCGAGTGGGAAGCGGGCTTTCTGCTCCAGGGAGGAAGACTCTGCACTGCCCTTTGTCGTGGGAAAACGAGCACGGAAAACCTGAGGAGGAATGCTGGGAAGAGAACAGGAAAGATCTGAGCTGAACTCTGTTAAACGCCTTTACTTTTCTTTAAGCACATTTTCAGGATATGGCAAGTTATGCAATATATTTTATACATATGTCTTTTTCTAAGTATTGATATCTTTATaggaaattacattttttttcatgGACTAGTCACTAATTGTTCTTGACATGTACTGTCAAGTGTACATATTAACTTTGTAATAAATATTTCACATTTTACAGTA
>XM_021569201.2
TGCCCATTGGTCACGAAGAGCAAACCGAGACAGGAATTGACATGATCCTCCCGGAAGGGTGCATTTGGTATGAAAATAAATCTGCGCGGTATTATACAATGAAACATAGCTAGTAGCCCCAGTTTCTTTCTAAATGCGTTCTTCTAACCACTGTTTATAGAGAACTATCACCATGGCCAATTTTAATGAAGCGGATTTACCACCAAATCTGACTTGCCTCAAAAATGTTGATACCCTTCTTCGATGTCCCATTTGTTTTGAGTTCCTGAGTATCGCAGTGATGACAAAATGCTCTCACAACTTCTGCTCTTTGTGCATAAGAACATTTATGTCCTACAAGTTGCAATGTCCAGTGTGTAATTCACCTACAACAGAACAGGACCTAAGAAACAACCGGATACTGGATGACCTGGTCACAAACTTTCAAACTGCAAGGCAGAAGTTGTCAAAAGCTCATTTCGACTCGCCTCCATTATCCCCGGAGACCCCAGCCTCTACTGTCAAGtgtaaaacacacagacagaccaggggCCCCAAGAAGAATGGCTCCATCCTCAGTCACTTTTTCCAGAGGGGGCCAATCACTTCCACATCATCTCTCACTACAGAGGCCCCGCCATCACTTCATACACAAACTGTGAAAGTAGACCCTGGTCATCAGGTCTCTGTGAATGAGGAGcccatggaggaggagataccGGCCCAGGTGCTGGTGTCTGTGAAGATTGAGAAGATGGACATCTCCATGACAGGGCTGTCGTCTCTGGCTGACTCGCCGTCCACATCACAGGACATGAAGCCTGTAGTTAAAGtGGAGTGTCCTGTGTGTTCTGTGGGCATCTCTGAACAGCTCATCAACAAGCACCTGGACACCTGTCTGACCCGAGGGGAGAAGAAGGAGAGCCTTAGGAGCTCCCTAGGTGCTAAGAGGAGGCCGATGGGGAAGCTGGTGTACACACTGCTGTCCATGCAGGAGCTGAAGAGGAGGCTGAAGGAGTGCCACCTCTCTGTCCAGGGTAACAAAGATCAGCTGGTCAGGAGGCACCAGGACTTTGTACACTTCTACAATGCCCAGTGTGACGCCCTGGAACCGAAATCAGCCAAAGACATTGCCAATGAAGTGGAGGCCAACGAGAAGGCCAGGAACCAACTTCAGGGGAAAACCAAACGTGTCATGGACTTCTCAAAGAATCAAAGTGTGGAGAAGATCGACGAGATGCATTCAACTTACAGGAAGCAGCATAACAGTGAGTTCTCCCGCCTTATCGCCCAGGTCCGGGGTCGCCTGGAAAAGACCAGGAAGAGGGAGATGAAACAGAAAGTGAGGGatgagggagtagaggaggaccGGAGAGCGGGCTCCAGCTCTGCAGATAAAGCAGCAGAACAGGAACAGAGGGATCCCAGTCCCAGTGACTCAGAGGCCTTCTGCATATTGATGACATCACCAGTACCGGAGCCCTCTGAGGAGCAGCAGCCTTCTGTTGTAGAGGTCATTTCCAGGTCACCCAGCTGTCTCAGTGACGTGTCCATCAGCAGtTCCATCTCCGACGTCTTCGCTGACAGATGCTATGAGctgcaggctgctgatgagctggttgctgatgggctggtcctggggctggcttgagggtcaatctcatcctcttcttccaagTCACTGTCAGACTCCGAATTGATAGAGACATGATCCTCATACACAGAAAATTCTTCATCTTCCAAAGTGGAAGAGActccttccacactagcttctctctctgtAAAACATATTTCTATGTCCCTCTGAGCAGAGGTTatttttgccatactgattgattgtggtaaggagccacacatgcaaaactatttatttgttgtgtccctCCCCCCCTCATTTTTCTTTTtacaatgtatcaaaataatgtattgtaataacattgtgcaggttcACGCAAAACATTGTTTAATTTCATACACTACAAAGGGTAAAGAGTGCCAGAAAagcgggagacaggcagggagacagacagacaggttattggTGCTATGTTGAAATAGCAGGCCCAGGGGGGAGTGAaggcacacagcaaacctttttgttaatattttatttgttttcacccacacacacacttttccacactTTTATTTCCATCTGGTCCAGGGTAATaaaaagaatgat
>XM_036950355.1
TGCCCATTGGTCACGAAGAGCAAACCGAGACAGGAATTGACATGATCCTCCCGGAAGGGTGCATTTGGTATGAAAATAAATCTGCGCGGTATTATACAATGAAACATAGCTAGTAGCCCCAGTTTCTTTCTAAATGCGTTCTTCTAACCACTGTTTATAGAGAACTATCACCATGGCCAATTTTAATGAAGCGGATTTACCACCAAATCTGACTTGCCTCAAAAATGTTGATACCCTTCTTCGATGTCCCATTTGTTTTGAGTTCCTGAGTATCGCAGTGATGACAAAATGCTCTCACAACTTCTGCTCTTTGTGCATAAGAACATTTATGTCCTACAAGTTGCAATGTCCAGTGTGTAATTCACCTACAACAGAACAGGACCTAAGAAACAACCGGATACTGGATGACCTGGTCACAAACTTTCAAACTGCAAGGCAGAAGTTGTCAAAAGCTCATTTCGACTCGCCTCCATTATCCCCGGAGACCCCAGCCTCTACTGTCAAGtgtaaaacacacagacagaccaggggCCCCAAGAAGAATGGCTCCATCCTCAGTCACTTTTTCCAGAGGGGGCCAATCACTTCCACATCATCTCTCACTACAGAGGCCCCGCCATCACTTCATACACAAACTGTGAAAGTAGACCCTGGTCATCAGGTCTCTGTGAATGAGGAGcccatggaggaggagataccGGCCCAGGTGCTGGTGTCTGTGAAGATTGAGAAGATGGACATCTCCATGACAGGGCTGTCGTCTCTGGCTGACTCGCCGTCCACATCACAGGACATGAAGCCTGTAGTTAAAGtGGAGTGTCCTGTGTGTTCTGTGGGCATCTCTGAACAGCTCATCAACAAGCACCTGGACACCTGTCTGACCCGAGGGGAGAAGAAGGAGAGCCTTAGGAGCTCCCTAGGTGCTAAGAGGAGGCCGATGGGGAAGCTGGTGTACACACTGCTGTCCATGCAGGAGCTGAAGAGGAGGCTGAAGGAGTGCCACCTCTCTGTCCAGGGTAACAAAGATCAGCTGGTCAGGAGGCACCAGGACTTTGTACACTTCTACAATGCCCAGTGTGACGCCCTGGAACCGAAATCAGCCAAAGACATTGCCAATGAAGTGGAGGCCAACGAGAAGGCCAGGAACCAACTTCAGGGGAAAACCAAACGTGTCATGGACTTCTCAAAGAATCAAAGTGTGGAGAAGATCGACGAGATGCATTCAACTTACAGGAAGCAGCATAACAGTGAGTTCTCCCGCCTTATCGCCCAGGTCCGGGGTCGCCTGGAAAAGACCAGGAAGAGGGAGATGAAACAGAAAGTGAGGGatgagggagtagaggaggaccGGAGAGCGGGCTCCAGCTCTGCAGATAAAGCAGCAGAACAGGAACAGAGGGATCCCAGTCCCAGTGACTCAGAGGCCTTCTGCATATTGATGACATCACCAGTACCGGAGCCCTCTGAGGAGCAGCAGCCTTCTGTTGTAGAGGTCATTTCCAGGTCACCCAGCTGTCTCAGTGACGTGTCCATCAGCAGAGTTTCAGAGAATGCCTCGAGTGGGAAGCGGGCTTTCTGCTCCAGGGAGGAAGACTCTGCACTGCCCTTTGTCGTGGGAAAACGAGCACGGAAAACCTGAGGAGGAATGCTGGGAAGAGAACAGGAAAGATCTGAGCTGAACTCTGTTAAACGCCTTTACTTTTCTTTAAGCACATTTTCAGGATATGGCAAGTTATGCAATATATTTTATACATATGTCTTTTTCTAAGTATTGATATCTTTATaggaaattacattttttttcatgGACTAGTCACTAATTGTTCTTGACATGTACTGTCAAGTGTACATATTAACTTTGTAATAAATATTTCACATTTTACAGTA

Function

symbol description
rad18 Predicted to enable metal ion binding activity; single-stranded DNA binding activity; and ubiquitin protein ligase activity. Predicted to be involved in postreplication repair and protein monoubiquitination. Predicted to act upstream of or within DNA repair. Predicted to be part of Rad6-Rad18 complex. Predicted to be active in nucleus. Orthologous to human RAD18 (RAD18 E3 ubiquitin protein ligase).

NR:

description
E3 ubiquitin-protein ligase RAD18-like isoform X1

GO: NA

KEGG:

id description
K10627 RAD18; E3 ubiquitin-protein ligase RAD18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569200.2 False 1861 mRNA 0.48 14 60433926 60508595
XM_021569201.2 False 2161 mRNA 0.48 13 60433957 60500984
XM_036950355.1 True 1887 mRNA 0.48 12 60433957 60508595

Neighbor

gene id symbol gene type direction distance location
srgap3 srgap3 coding upstream 50515 60265479 ~ 60383800 (+)
LOC110494259 LOC106565584 coding upstream 186016 60244785 ~ 60247910 (+)
LOC110494256 LOC106565588 coding upstream 338556 60078750 ~ 60095370 (+)
LOC110494255 LOC106565587 coding upstream 355489 60063250 ~ 60078437 (+)
LOC110494251 LOC106565596 coding upstream 546884 59857225 ~ 59887042 (+)
LOC110494264 oxtr coding downstream 67083 60575678 ~ 60599614 (+)
LOC110494272 gpx1 coding downstream 461729 60970324 ~ 60971719 (+)
LOC110494274 brk1 coding downstream 506130 61014725 ~ 61019187 (+)
LOC110494275 LOC106565569 coding downstream 516113 61024708 ~ 61037602 (+)
LOC110494276 NA coding downstream 530683 61039278 ~ 61043722 (+)
G1471265 NA non-coding upstream 6165 60427558 ~ 60427761 (+)
G1471261 NA non-coding upstream 7759 60425958 ~ 60426167 (+)
G1471250 NA non-coding upstream 14849 60418669 ~ 60419077 (+)
G1471243 NA non-coding upstream 18359 60415358 ~ 60415567 (+)
G1470777 NA non-coding upstream 48368 60385296 ~ 60385558 (+)
G1471279 NA non-coding downstream 36 60508631 ~ 60509137 (+)
G1471395 NA non-coding downstream 1866 60510461 ~ 60510808 (+)
G1471394 NA non-coding downstream 2275 60510870 ~ 60511105 (+)
G1471475 NA non-coding downstream 98823 60607418 ~ 60607656 (+)
G1471451 NA non-coding downstream 107580 60616175 ~ 60618887 (+)
G1470607 NA other upstream 329919 60101892 ~ 60104007 (+)
G1469076 NA other upstream 1926041 58507297 ~ 58507885 (+)
G1467219 NA other upstream 2819626 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 2885748 57498305 ~ 57548178 (+)
G1467159 LOC106565433 other upstream 2950337 57478797 ~ 57554480 (+)
G1471723 LOC100380707 other downstream 463883 60972478 ~ 60999063 (+)
LOC110494283 LOC106565563 other downstream 1047724 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 2189908 62698503 ~ 62698815 (+)
G1473177 NA other downstream 2201744 62710339 ~ 62711136 (+)
G1474159 NA other downstream 2708353 63216948 ~ 63217594 (+)

Expression


Co-expression Network