LOC110494274 (brk1)


Basic Information

Item Value
gene id LOC110494274
gene name brk1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 61014725 ~ 61019187 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569217.2
AACACAATTTCCCCAAATCAGAAAATGGCCGGTCAAGAAGATCCTGTGCAGAGGGAGATCCACCAAGACTGGGCAAATCGAGAATACATTGAGGTTACCACGAGCAGCATAAAGAAAATAGCAGATTTCCTCAATTCCTTTGATATGTCCTGCCGGTCTCGTTTGGCCACCCTAAATGAAAAGCTGACAGCGTTAGAGAGGAGAATTGAGTACATTGAAGCAAGGGTCACAAAAGGAGAGACCTTGACCTAAACCAAGATAGTATGCTGGACTGGGTGCTGCAGTTTGGCTGAGGATAGAATACTACATTTGTGACCAATTCCATATTtgccctttttttttttaaactacgctttttttttttttttttttttttcaatttatttGTTCTGTGGGACCAAAAAAGAAATATTTTCATACTGTGTGTATTTTACGACCATAGCTACTGGATGGTGATGGTAATACCACAGCATCTCCCACAATGTTATAATCGAGACTCAGTTAATGCTATCTTGTATTTATGTTATTATGGACCAACATAACTTGttcattgatttgatttgcacaAATACATGAACTTCCTAATAGGGGAATGTTTTGTTTTAGACACTTCTTTGTAACCAGGTTAAATCAAAAGTGACTATGTGAATGAGTGTCCCACCCCTATGGAGATTTCACAGCACATGCATTGCAGAAATATCCTTCCCATTAGGCTGAACCAGGATGATTTGAACCACAGGAAGAGGAAGTGCCAAAATGAATAGTCAGCTCTTTTACTGTGGTCATTATGCTTATCCATATATTTCACTGCTTGTAATAATTATTTTACTTTAGTGTTACATGTAATAACCTGTTTTAAAAGTAAGTTATTCATGTGTTTTTTTGGAGAAGGGCTTGGAAGTTGTTTGGTTCAAGGGAAGCATGCATAAATCCCAGGTTGAAGGTGTTCCTGGAATATAATATAGGCTGGGTGTGGTGTCAAGACCTGCTTGTATTTGCTCAGAGTGAGTCCATACAGAGTCCATACATACACTTGCCACTATAGCTTCTGGTTGCTGCCCTCAGCCGTAAACTAGTGTTCTGCTTTCCATGCCAAAGGAACAGATCAACAAACCTCTCCTCTGATGGTCAAAATGTGTTTACTTTTTACTGAGCGCTACATTACATGATGTAAATACAAACATGAATTGTGTTAGAGTAATTTTACCCTCGTAGAACTTAGACAGCATTTAGAGGTCTGTGTATGATGGTTCTGAGTACTGTCGTTTTTCTGTTCTACTTGATAATTATTGCACCTACCTGGTGTCTCAGCTCTACCAGTCTGCGATGGAAAGAATGGAAGTATATCTTCTTTTTTCATATACTAACGGGCCACCAGACTACAGAAACTATAGCAATGGAACTGAAGTAATGGAATAGCAATACCTATAACATTAGCATGTCATTGGCTGCTTTGATTTAAAAACATAAACAACAAAGTGGAACTCTTAAGAAGAGTGGAACCCTCGCTCTCCTAATATAAAGTTGaaccctctccaccccta
>TU1683225
CCCAAATCAGAAAATGGCCGGTCAAGAAGATCCTGTGCAGAGGGAGATCCACCAAGACTGGGCAAATCGAGAATACATTGAGGTTACCACGAGCAGCATAAAGAAAATAGCAGATTTCCTCAATTCCTTTGATATGTCCTGCCGGTCTCGTTTGGCCACCCTAAATGAAAAGCTGACAGCGTTAGAGAGGAGAATTGAGTACATTGAAGCAAGGGTCACAAAAGGAGAGACCTTGACCTAAACCAAGATAGTATGCTGGACTGGGTGCTGCAGTTTGGCTGAGGATAGAATACTACATTTGTGACCAATTCCATATTtgccctttttttttttaaactacgctttttttttttttttttttttttcaatttatttGTTCTGTGGGACCAAAAAAGAAATATTTTCATACTGTGTGTATTTTACGACCATAGCTACTGGATGGTGATGGTAATACCACAGCATCTCCCACAATGTTATAATCGAGACTCAGTTAATGCTATCTTGTATTTATGTTATTATGGACCAACATAACTTGttcattgatttgatttgcacaAATACATGAACTTCCTAATAGGGGAATGTTTTGTTTTAGACACTTCTTTGTAACCAGGTTAAATCAAAAGTGACTATGTGAATGAGTGTCCCACCCCTATGGAGATTTCACAGCACATGCATTGCAGAAATATCCTTCCCATTAGGCTGAACCAGGATGATTTGAACCACAGGAAGAGGAAGTGCCAAAATGAATAGTCAGCTCTTTTACTGTGGTCATTATGCTTATCCATATATTTCACTGCTTGTAATAATTATTTTACTTTAGTGTTACATGTAATAACCTGTTTTAAAAGTAAGTTATTCATGTGTTTTTTTGGAGAAGGGCTTGGAAGTTGTTTGGTTCAAGGGAAGCATGCATAAATCCCAGGTTGAAGGTGTTCCTGGAATATAATATAGGCTGGGTGTGGTGTCAAGACCTGCTTGTATTTGCTCAGAGTGAGTCCATACAGAGTCCATACATACACTTGCCACTATAGCTTCTGGTTGCTGCCCTCAGCCGTAAACTAGTGTTCTGCTTTCCATGCCAAAGGAACAGATCAACAAACCTCTCCTCTGATGGTCAAAATGTGTTTACTTTTTACTGAGCGCTACATTACATGATGTAAATACAAACATGAATTGTGTTAGAGTAATTTTACCCTCGTAGAACTTAGACAGCATTTAGAGGTCTGTGTATGATGGTTCTGAGTACTGTCGTTTTTCTGTTCTACTTGATAATTATTGCACCTACCTGGTGTCTCAGCTCTACCAGTCTGCGATGGAAAGAATGGAAGTATATCTTCTTTTTTCATATACTAACGGGCCACCAGACTACAGAAACTATAGCAATGGAACTGAAGTAATGGAATAGCAATACCTATAACATTAGCATGTCATTGGCTGCTTTGATTTAAAAACATAAACAACAAAGTGGAACTCTTAAGAAGAGTGGAACCCTCGCTCTCCTAATATAAAGTTGaaccctctccacccctatcctcttcccttttttatcttctctcatctcctcactGCTCTTCCCTTCCTTAAAattgtctctcctttctcttctcctgAAAAGTAAAAAAATCGTGTCGGTGGATAAATATTTTAGACATTCCCCCTATGCACTTGTGgagatgtcaaatcaaattgtattggtcacatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttccgaccatgcagtaatatctaacaagtaatctaacaatttcacaactaccttatacacacaagtgtaaggaatgaataagaatatgtacatataaatgtatggatgagcgatggccgaacggcataagcaagatgcagtagatggtatagagtacagtatatacatatgagatgagtgatgtagggtatgtaaacattatataaagtggcattgtttaaa

Function

symbol description
brk1 Predicted to be involved in cell motility and regulation of actin polymerization or depolymerization. Predicted to act upstream of or within actin filament organization. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of SCAR complex. Orthologous to human BRK1 (BRICK1 subunit of SCAR/WAVE actin nucleating complex).

NR:

description
probable protein BRICK1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569217.2 False 1544 mRNA 0.39 3 61014725 61018741
TU1683225 True 1979 lncRNA 0.38 3 61014736 61019187

Neighbor

gene id symbol gene type direction distance location
LOC110494272 gpx1 coding upstream 43006 60970324 ~ 60971719 (+)
LOC110494264 oxtr coding upstream 415111 60575678 ~ 60599614 (+)
rad18 rad18 coding upstream 506130 60433926 ~ 60508595 (+)
srgap3 srgap3 coding upstream 631314 60265479 ~ 60383800 (+)
LOC110494259 LOC106565584 coding upstream 766815 60244785 ~ 60247910 (+)
LOC110494275 LOC106565569 coding downstream 5967 61024708 ~ 61037602 (+)
LOC110494276 NA coding downstream 20537 61039278 ~ 61043722 (+)
LOC110494279 LOC106565568 coding downstream 35890 61054631 ~ 61129367 (+)
LOC110494281 gnai2 coding downstream 126770 61145511 ~ 61257368 (+)
LOC118940484 NA coding downstream 136154 61154895 ~ 61159504 (+)
G1471795 NA non-coding upstream 8897 61005602 ~ 61005828 (+)
G1471794 NA non-coding upstream 9385 61005067 ~ 61005340 (+)
G1471709 NA non-coding upstream 127996 60886363 ~ 60886729 (+)
G1471687 NA non-coding upstream 166981 60847292 ~ 60847744 (+)
G1471620 NA non-coding upstream 262727 60747535 ~ 60751998 (+)
G1471732 NA non-coding downstream 3871 61022612 ~ 61023159 (+)
G1471796 NA non-coding downstream 19567 61038308 ~ 61038515 (+)
G1471720 NA non-coding downstream 114437 61133178 ~ 61135571 (+)
G1471853 NA non-coding downstream 118478 61137219 ~ 61137589 (+)
G1471723 LOC100380707 other upstream 15662 60972478 ~ 60999063 (+)
G1470607 NA other upstream 910718 60101892 ~ 60104007 (+)
G1469076 NA other upstream 2506840 58507297 ~ 58507885 (+)
G1467219 NA other upstream 3400425 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 3466547 57498305 ~ 57548178 (+)
LOC110494283 LOC106565563 other downstream 537578 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 1679762 62698503 ~ 62698815 (+)
G1473177 NA other downstream 1691598 62710339 ~ 62711136 (+)
G1474159 NA other downstream 2198207 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 2639703 63658373 ~ 63663255 (+)

Expression


Co-expression Network