LOC110494276


Basic Information

Item Value
gene id LOC110494276
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 61039278 ~ 61043722 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569221.2
ttaatgcAGCTGAGCACCAGCAAGAGACCATTGTTAGCAATGtttctgtagcgctcatgtgattgcagaGTTTGCTAAACAATTGGCCACTgtattgatgcaaataatcatgatattatTCTGCTAGGTAGGCATGGTCTACTTTGTTTGCTGTACAGGGTCTTCATGTTGCTCTACACCCTGATTTGGTGTATGTACTCTGGCCTGCTGTTCTCCAATCTCAAGTGGCTTCTTCAGCCACCTGACCTACTGCCTGATGGTCATCTACCACCTGGTTGCTTCCTGTAACCTGGCCTGTGCCACAGTCCTAGTCAGGTGCCACAGCAGGGACCAAATAAAGACCTGCTCTGGAGGGGACCAAACTAGAGAGCGTGGAATCGGAGCAGAGCCCTTGggtcctttccctctcccctctctcctcttcatctccccgAGACTGCAGTGGTTCCTCCACAGCCTGATGTGTGCCTTCTGCCTCGCTGTGTCCTTCCTCTACTGGAGCCTTGACTACCCCATGGAGAACCACCCTCTGTCCCCATTCAACCTCAAAATGCACATGGGAAATTCTGCCCAGGCCCTGCTGGACCTTCTCCTATCAGCAACGCCCATCTACCTGGCCCACTACCTCTATCAGCTCCTCATTGGCTGCCTTTACATCCTGTTTGCTGTGGTCTACTGGCTGGCAGGCCAAACCAACCTCAGTGGAAAGCCCTACATTTACAAGGTACTGGACTTTGGAGGGTGCCCCTTGGTGGCCACTCTGTGTGTGCTTTGCTTTGTTCTGGTCTGCTTTCCCCTCTGTCACTTCCTGGTGTGGAATGTGCAACTGCTGAGGAGGCAGCTGGCGGGCAGGGTAAggggagagaggctgagaggcttggtggtggggggagggggcgGCCCGGTGCCGGTCTCCCTCTTGGACCCATTCTCCTCAGTGTTAACCcccaggaggaggggagaggtctGCGGCGATGGGGCCACTCAGTCCCTACTCTCATCCACCACCAGTCATTTCTACAGTGCTGTCACTGTCTACCTCTGAGGTCCAGTCTGAACTAACATAGAGCTTGATGCCATGTTGTTTTACATGTTCTGCATAATGTCATCCATCTGTGTTGTCCTGTCCCTGTCAGGCCAAACAATACGATGCTTAACAGATCTTCTCTTCACTTtgtagtgtgtggtgttatagttgCCTGATCCAAAAGGTAACATCACAGTGGCCAAACTATGTTAGACTTTGTATCACCAGGGGGCAGTAACAGTATTAGTTGCTTTGATCGAACGTGTTCAGCCTTAATCAATTCAAATAGTAGGATCAATAAATTAGCCAGCTTACATGATTAACACTGAAATTCTAGAGTAGGCTCAAGTTGGGAGTGGGAGTAACAAGTCATTAATAACATGCTGGTTTTAGGGTTGTTGTTTTTTCTGAATATTGTACAAGTTTGTTAAATTGCATATTTTATCGAAACTACAAAACTGTGGATGGATCCTACTTGCAGAATACACAGGCCACTGTTGTCCTGTCCATCCTCACACAAAGCAAATAACACAGCTGCACATGAAGTCTAAAATATGAATGAGGCTTATGTGAGCAGACTGGTGTGCCAATAAGAGCAATGAAGAAAATATATGGTAATTTGACATTAAGAAAATTGTGGGACTTGCTCTACCTGTTTAAAATAATAGTTGTGGTCGTTGAAGAAGTtattacagtttttacttaaacaaaacaaacaaagcaGTTAAAATATAGTGAAAGTTAAATGTAAAATAATTGGTCTGATTACTTTGATATACTACTATATCAACCTTATTACTTTGGATAGAGGGGAAAGTTAGATCACACATTTCATCAGAAATAACTACACTCGGACTACTACATTTTTTTATACTCTCCTACTAAAATACCACAGTATATGACAACGTAATAATAGAGCACAGAAGACAATGAGGCATTGTTGAAGTTTTAAACAAgtcaaatattttattttttacaacttaTTTTGATGACAGAGCGATCAGTGGGAAGAGGGCCGGAAAGGGGGAACCCCTTCCCTCAGAGCACCTCTGCTTCCAGGGGGGACACTCAAGTTAACTGAGCATAGCATATAAAGGGTccgttttagttttttttttatgtaatttTCTCCGTTTCTCcagttgttgtttttattttttcagGTTTTCCCTCAAAATCACACTattaatagaaaaacaacaatACTTAAActacatcaggagaccacttttgaggtctggaaatgttttattaaatgtagatttttgggtgtagttaccctttaatgcAGCTGAGCACCAGCAAGAGACCATTGTTAGCGATGtttctgtagcgctcatgtgattgcagaGTTTGCTAAACAATTGGCCACTgtattgatgcaaataatcatgatattatTCTGCTAGGTAGGCATGGtctactttgtagttaacatttaattgaggaggttttgggaaagcctttccatctctaccagaagaaggttATCGTTAGCATCATCGCAAACGGCGACATAAGGTGTAGACATACAGTACGCGCGCGcaccgcgcacacacacaagttcaatacatttagtattgGAAATTAGTTGCGCTATGAAGACAGCTCCCTCCAAGGCATGTGTTGCTAGGCAACCCCCCTGCAATTACCTGGGCAGTCCTGCTCCCTCGATGGCTAAAACCAGTGTGAGAAACGTgctaatttagcagacactcttatccagggttaagtgccttgctcaaggggcacatcaacagatttttcacctagttggctcagaGATTCAAATCGGTCACCTTTCAGTtagtggcccaatgctcttaaccgctaggctacctgccgcctaacAAAAGTTTGTGGTAGTGTTGTTAGACAAAGCAAGGAAAGTGAACTTCAAAACATGATGTAGTTTTATTGGAATCTGCAGCTGTTGTTGGTAACTAATGAATCTGCTAGCTTCTGACATGACTTACTGCATCTTTAATGACAGCAGTTGATATATTACTACAACGGATCTACCTCTTGAATGTTAGAAGCTATTCCTGTTCTGAGAATTAAAGGACGATTTCATACGTTCAAAGTTTTTGGTAAAGTGGTCAaagtagctgatttgtgtcaaaagttACATTGTTTACAGTTAATAGAATATAATGTTGGGAGTCATGTCGTCACAATGGCCCTTTAGAATTCTGAGGAAATCCCATGAAAGTGGATGGAGGAcaaaaaataagtttaaaaaaagcgtaatctttttttttttaagtataaaaGATATCAAAACGTTGTATACAAGCATACTATTTCAGAACAATCGGCACGTTTTAAAGTTTGAATGACGTTTCTAGCTTAAACAGTGTAGGAGGAGTAGTGTTCCAAAGAAAAATAATATGAAGTATGATGAAGATTTAGAATGGGACATTTGCTTCGCAAGTCCCATTAATTACACGCAACCACCCCCCAATTCCTTATTCGTTTGTCACATAAAGAACTGACACATTACATTATAGCCAAAATGTACCATACTCATATTAGTATGCCATCAGTTGGAGGTAAGAGCACTACAACACACCTTTCTATCCCCCAGCACTTGGGGACTGGTAGTAGCCCAGTCTCCCTCCTGAATTGGGTGGATTAGTGTAAAGTGGGGGCAAGTCGTGACATCCCAAGTTCTTTACTGGAACTCGGCTTTTAAGGGGCAGCACAAATAATGGTTTATTCGAGCAGGTTTCATTTACTTAACAAAGATGAGGATAATAGCCCGGCAAAATTCCTGCTGCTTTCATACAATCACATCAGGTGGTGTGTGACCGGATTGGCCTGCTTGGCCCGAGTCTCCTCTCTGATTGACAGCGTGACAGCCAGGCCTCAGCAAATTAAGTGACATTAAGGCAGTCCAGTGACAGCCAGCCTTCATCTCCTTGTTGATTAATACCACAGCGACAAAATGAGAGGTCTATTCCATCTGCAGACGGTAAATGGGAACATTTTGGCAGTTGTCATCTTAGTACAACTAATTGGGGACTTGCTGGAATGCATCATATCAGTTTACAAGGAGTTTTATTTAACACAATAGCCACAGATGCACAGTCATGGGTGTAGATTTTAAGTCTGAAGAAAGGGTTAAATGTGATGCTATCTTTACTGACATTTTACCTTAGTACATATTCCTCGATTTTTTCCCAGATTTCCAGAGCATGATCTGTGATCTCTCCAGACAGAGGGTTTTGaccattatacagtgccttgcgaaagtatttggcccccttgaactt
>TU1683237
ACTAACATAGAGCTTGATGCCATGTTGTTTTACATGTTCTGCATAATGTCATCCATCTGTGTTGTCCTGTCCCTGTCAGGCCAAACAATACGATGCTTAACAGATCTTCTCTTCACTTtgtagtgtgtggtgttatagttgCCTGATCCAAAAGGTAACATCACAGTGGCCAAACTATGTTAGACTTTGTATCACCAGGGGGCAGTAACAGTATTAGTTGCTTTGATCGAACGTGTTCAGCCTTAATCAATTCAAATAGTAGGATCAATAAATTAGCCAGCTTACATGATTAACACTGAAATTCTAGAGTAGGCTCAAGTTGGGAGTGGGAGTAACAAGTCATTAATAACATGCTGGTTTTAGGGTTGTTGTTTTTTCTGAATATTGTACAAGTTTGTTAAATTGCATATTTTATCGAAACTACAAAACTGTGGATGGATCCTACTTGCAGAATACACAGGCCACTGTTGTCCTGTCCATCCTCACACAAAGCAAATAACACAGCTGCACATGAAGTCTAAAATATGAATGAGGCTTATGTGAGCAGACTGGTGTGCCAATAAGAGCAATGAAGAAAATATATGGTAATTTGACATTAAGAAAATT
>TU1683307
CAGCCAGGCCTCAGCAAATTAAGTGACATTAAGGCAGTCCAGTGACAGCCAGCCTTCATCTCCTTGTTGATTAATACCACAGCGACAAAATGAGAGGTCTATTCCATCTGCAGACGGTAAATGGGAACATTTTGGCAGTTGTCATCTTAGTACAACTAATTGGGGACTTGCTGGAATGCATCATATCAGTTTACAAGGAGTTTTATTTAACACAATAGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569221.2 False 4302 mRNA 0.43 2 61039278 61043722
TU1683237 False 606 lncRNA 0.38 1 61040478 61041083
TU1683307 True 220 lncRNA 0.42 1 61043306 61043525

Neighbor

gene id symbol gene type direction distance location
LOC110494275 LOC106565569 coding upstream 1676 61024708 ~ 61037602 (+)
LOC110494274 brk1 coding upstream 20537 61014725 ~ 61019187 (+)
LOC110494272 gpx1 coding upstream 67559 60970324 ~ 60971719 (+)
LOC110494264 oxtr coding upstream 439664 60575678 ~ 60599614 (+)
rad18 rad18 coding upstream 530683 60433926 ~ 60508595 (+)
LOC110494279 LOC106565568 coding downstream 10909 61054631 ~ 61129367 (+)
LOC110494281 gnai2 coding downstream 101789 61145511 ~ 61257368 (+)
LOC118940484 NA coding downstream 111173 61154895 ~ 61159504 (+)
LOC110494282 LOC106565567 coding downstream 226763 61270485 ~ 61276247 (+)
LOC110493231 LOC106565565 coding downstream 309763 61353485 ~ 61458471 (+)
G1471796 NA non-coding upstream 763 61038308 ~ 61038515 (+)
G1471732 NA non-coding upstream 16119 61022612 ~ 61023159 (+)
G1471795 NA non-coding upstream 33450 61005602 ~ 61005828 (+)
G1471794 NA non-coding upstream 33938 61005067 ~ 61005340 (+)
G1471720 NA non-coding downstream 89456 61133178 ~ 61135571 (+)
G1471853 NA non-coding downstream 93497 61137219 ~ 61137589 (+)
G1471854 NA non-coding downstream 97052 61140774 ~ 61141184 (+)
G1471855 NA non-coding downstream 99720 61143442 ~ 61143759 (+)
G1471858 NA non-coding downstream 100954 61144676 ~ 61144955 (+)
G1471723 LOC100380707 other upstream 40215 60972478 ~ 60999063 (+)
G1470607 NA other upstream 935271 60101892 ~ 60104007 (+)
G1469076 NA other upstream 2531393 58507297 ~ 58507885 (+)
G1467219 NA other upstream 3424978 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 3491100 57498305 ~ 57548178 (+)
LOC110494283 LOC106565563 other downstream 512597 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 1654781 62698503 ~ 62698815 (+)
G1473177 NA other downstream 1666617 62710339 ~ 62711136 (+)
G1474159 NA other downstream 2173226 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 2614722 63658373 ~ 63663255 (+)

Expression


Co-expression Network