LOC110494279 (LOC106565568)


Basic Information

Item Value
gene id LOC110494279
gene name LOC106565568
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 61054631 ~ 61129367 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950365.1
TTGGAGGTTGCATGCAGTAGGCGGAACCTGGACACGCTCAACATCCCACATTCAATAGATTATGAGCTACATTTTTATAGTGAACACATTACATTTACACAGCAATTGAGAAGGAGCGCACACGGATCTCATAAAATATTGATTGCCGTATAACAGGTAACGGAGTGAAGAGCCAcaagacaaagaaaaaacagcaaAGAAGCAGATGCAAGATTCGTGTGGAGATATTCGGACTGAGTTCACATTGGCACACTAGTTATCTCTGACTCCTGAAGGAAAAGAggacatcagacacacacacacacacacaaatacacacacacacatccatcagctgtagtctaactgcCGCTTGTCTATTATTTCCTAGACTCCTGAAGGAAAAGAggacatcagacacacacacacacacacacacacacacacacacacacacacacacacacacacatccatcagCAGAAAGATGAGTGACGATAAAGCAGCTGAAAGCGTTGAACCTGCTCCACCAGCTCTAGCACCAGCGGCAGCACCAGCTCCAGCTCCAGCACCAGCACCAGCTCCAGCACCAGCACCGGCGCCAGCAGAGATGAACTCTATTCCCAATGGGAAAGGCCATGAGCCTGGGGAGGAAACCACAGCGGAAGCCAAAATACCACCAGGAGACACCACAGAGCAAAGTGAGGATCCAGAGGCTAACCTTGCAGAGAGTCAGGAGTTCCTGTCTAGCATGGAGGACAAGAAGGCCACAGGCTTCACAGACTTTGAGGGGAAGACCTCTTTCGGAATGTCAGTATTCAACTTGGGCAACGCCATCATGGGAAGTGGAATTCTGGGATTGTCGTACGCCATGGCCAACACAGGGGTCGTCCTATTCCTgGTGCTCCTGACGGTAGTGGCTGTCCTCTCATCTTACTCCATCCACTTGCTACTCAAGTCCTCTGGCATTGTGGGGATCCGGGCGTATGAGCAGCTGGGCCAAAGGGCGTTTGGAACGCCAGGCAAGATGGCCGCCGgcatcgccatcacactgcaaaACATTGGAGCCATGTCCAGTTACCTGTATATCGTGAAGTATGAGTTCCCTCTGGTCATCCAGGCCTTCCTGGGGGTTGACAATCCATCAGGtGAGTGGTACCTGAATGGGAACTACCTGGTCATCATGGTGTCCATCAGTGTCATCCTGCCTCTGGCTTTGATGAAGCAGCTAGGGTACTTGGGCTACACCAGTGGCTTCTCCCTCACCTGCATGGTCTTCTTCCTCATCTCGGTCATCTATAAGAAGTTCCATACCCTCTGTCCCTTTGTAGACTTTGTCTTTAACAGCACAGCCAGTGTGACTGCTGTTACCAACGACACAGGTTACAACGAAGCCTGTGTTCCCAAAATGGTCAACCTCAACTCACAGACTGCCTACACCATCCCCATCCTGGCGTTTGCCTTTGTGTGCCACCCTGAGGTCCTGCCCATCTACACCGAGCTCAAAAACCCAACCAAGCAAAGGATGCAGCATGTGTCCAACATCTCCATTGTAGTCATGTACACCATGTACTTCCTGGCTGCTCTGTTTGGATACCTGACCTTCTATGGTGAGGTGGAGTCAGAGCTGCTGCACACCTACAGCCGTCTGGACCCTTACGACACCCTGATCCTCTGTGTCCGTCTGGCCGTGCTCACCGCTGTCACACTCACCGTCCCCATAGTGCTCTTCCCTGTAAGGAGAGCCATCCAGCAGTTGTTTTTCCccaacaagacattctactgGCCCCGCCACATTGCCATTGCTGTCACCCTGCTCACCCTCATCAACATGCTGGTCATCTTCGCCCCTAACATCCTGGGCATCTTCGGCATCATCGgtGCCACATCTGCCCCCTGCCTCATCTTCATCTTCCCTGCTGTCTTCTACATCCGCATTGTACCCGAAGAGGAGGAGCCCATGCGCTCTACCCCTAAAATCCTGGCTGCCTGCTTCGCTGGAATAGGCTTCCTGTTTATGGTAATGAGCCTCAGCTTTATCCTCATTGATTGGACGTCGGGGAGTAGCAAAGCCAGCAGCGGTCATTAGGCTGCTTCTATAAGTCTTCTGATTTTATATTGTAAATCTAGACCTGTATTGTATTTTCTCTGTGTTGTCATGGATCATATTTAGTAGAAGATGCACTATCTCTTCCTCCAGAATGAGTGGGCCATAGTGTCTAGAGATGGGGAATTCAATCTTCTGGAGGTTTCTGCTCCCCATTGGACTGCTTCTCACTCAAGGTCCATGGAATTGTAGCCCCAGCCAAACTGTGTATAGAGGGAAAGGCCAACATACTTTCCTGGGGAAGACGATTGTGCATTAGAAACAAATGGAAAGTCATGCTGGCTTGCTGAATCTGCCACCACCTCCCATTCCAGCCCAGCCCTGCGCTCCAGACCAGACCCATAATCTATTACCCTATAAACGTGTAATCTGTCAATCACAGCAAGAATCTAACTGCCACACTCTAGTCTAGATAACCACATAGCTTTCAGTAGGGGAGAAGAAGACACAACAGATCGTTGGAGGCTGGGCAGTTCTTTCCTATTTGTAGGCCAAGTCTACTGTGTTAAGTTATTGATGTAGTTAGGTCATGGCAATATTCGGTACAATAGCTGAGGGAATGTGGCATTAAAAGCTATTGGACAGAGGCAGAGCGGTGGTTACTGTGGCAACGTCCAGTGACCCGTGCTGGTGTTGTCACCCCGGTGGCCAGATGCTGTCCTTAATCTACACGCTCGGCTTCATTCCTCACAGATATCAGAGGATGGAACCATGCAACTGATATGcaactgtacagtgtgtgcagtCTTATGACTCTACCATTACAATACAGTatgatatatatacagtatcagtcaaaagtttggacacacctactcattcaagggttttacttcatttttactattttctacattgtagaa
>XM_036950363.1
TTGGAGGTTGCATGCAGTAGGCGGAACCTGGACACGCTCAACATCCCACATTCAATAGATTATGAGCTACATTTTTATAGTGAACACATTACATTTACACAGCAATTGAGAAGGAGCGCACACGGATCTCATAAAATATTGATTGCCGTATAACAGGTAACGGAGTGAAGAGCCAcaagacaaagaaaaaacagcaaAGAAGCAGATGCAAGATTCGTGTGGAGATATTCGGACTGAGTTCACATTGGCACACTAGTTATCTCTGACTCCTGAAGGAAAAGAggacatcagacacacacacacacacacaaatacacacacacacatccatcagctgtagtctaactgcCGCTTGTCTATTATTTCCTAGACTCCTGAAGGAAAAGAggacatcagacacacacacacacacacacacacacacacacacacacacacacacacacacacatccatcagCAGAAAGATGAGTGACGATAAAGCAGCTGAAAGCGTTGAACCTGCTCCACCAGCTCTAGCACCAGCGGCAGCACCAGCTCCAGCTCCAGCACCAGCACCAGCTCCAGCACCAGCACCGGCGCCAGCAGAGATGAACTCTATTCCCAATGGGAAAGGCCATGAGCCTGGGGAGGAAACCACAGCGGAAGCCAAAATACCACCAGGAGACACCACAGAGCAGGAAATTGTTCCTAATAGTGTCCAAAATGTCAGAAGTGAGGATCCAGAGGCTAACCTTGCAGAGAGTCAGGAGTTCCTGTCTAGCATGGAGGACAAGAAGGCCACAGGCTTCACAGACTTTGAGGGGAAGACCTCTTTCGGAATGTCAGTATTCAACTTGGGCAACGCCATCATGGGAAGTGGAATTCTGGGATTGTCGTACGCCATGGCCAACACAGGGGTCGTCCTATTCCTgGTGCTCCTGACGGTAGTGGCTGTCCTCTCATCTTACTCCATCCACTTGCTACTCAAGTCCTCTGGCATTGTGGGGATCCGGGCGTATGAGCAGCTGGGCCAAAGGGCGTTTGGAACGCCAGGCAAGATGGCCGCCGgcatcgccatcacactgcaaaACATTGGAGCCATGTCCAGTTACCTGTATATCGTGAAGTATGAGTTCCCTCTGGTCATCCAGGCCTTCCTGGGGGTTGACAATCCATCAGGtGAGTGGTACCTGAATGGGAACTACCTGGTCATCATGGTGTCCATCAGTGTCATCCTGCCTCTGGCTTTGATGAAGCAGCTAGGGTACTTGGGCTACACCAGTGGCTTCTCCCTCACCTGCATGGTCTTCTTCCTCATCTCGGTCATCTATAAGAAGTTCCATACCCTCTGTCCCTTTGTAGACTTTGTCTTTAACAGCACAGCCAGTGTGACTGCTGTTACCAACGACACAGGTTACAACGAAGCCTGTGTTCCCAAAATGGTCAACCTCAACTCACAGACTGCCTACACCATCCCCATCCTGGCGTTTGCCTTTGTGTGCCACCCTGAGGTCCTGCCCATCTACACCGAGCTCAAAAACCCAACCAAGCAAAGGATGCAGCATGTGTCCAACATCTCCATTGTAGTCATGTACACCATGTACTTCCTGGCTGCTCTGTTTGGATACCTGACCTTCTATGGTGAGGTGGAGTCAGAGCTGCTGCACACCTACAGCCGTCTGGACCCTTACGACACCCTGATCCTCTGTGTCCGTCTGGCCGTGCTCACCGCTGTCACACTCACCGTCCCCATAGTGCTCTTCCCTGTAAGGAGAGCCATCCAGCAGTTGTTTTTCCccaacaagacattctactgGCCCCGCCACATTGCCATTGCTGTCACCCTGCTCACCCTCATCAACATGCTGGTCATCTTCGCCCCTAACATCCTGGGCATCTTCGGCATCATCGgtGCCACATCTGCCCCCTGCCTCATCTTCATCTTCCCTGCTGTCTTCTACATCCGCATTGTACCCGAAGAGGAGGAGCCCATGCGCTCTACCCCTAAAATCCTGGCTGCCTGCTTCGCTGGAATAGGCTTCCTGTTTATGGTAATGAGCCTCAGCTTTATCCTCATTGATTGGACGTCGGGGAGTAGCAAAGCCAGCAGCGGTCATTAGGCTGCTTCTATAAGTCTTCTGATTTTATATTGTAAATCTAGACCTGTATTGTATTTTCTCTGTGTTGTCATGGATCATATTTAGTAGAAGATGCACTATCTCTTCCTCCAGAATGAGTGGGCCATAGTGTCTAGAGATGGGGAATTCAATCTTCTGGAGGTTTCTGCTCCCCATTGGACTGCTTCTCACTCAAGGTCCATGGAATTGTAGCCCCAGCCAAACTGTGTATAGAGGGAAAGGCCAACATACTTTCCTGGGGAAGACGATTGTGCATTAGAAACAAATGGAAAGTCATGCTGGCTTGCTGAATCTGCCACCACCTCCCATTCCAGCCCAGCCCTGCGCTCCAGACCAGACCCATAATCTATTACCCTATAAACGTGTAATCTGTCAATCACAGCAAGAATCTAACTGCCACACTCTAGTCTAGATAACCACATAGCTTTCAGTAGGGGAGAAGAAGACACAACAGATCGTTGGAGGCTGGGCAGTTCTTTCCTATTTGTAGGCCAAGTCTACTGTGTTAAGTTATTGATGTAGTTAGGTCATGGCAATATTCGGTACAATAGCTGAGGGAATGTGGCATTAAAAGCTATTGGACAGAGGCAGAGCGGTGGTTACTGTGGCAACGTCCAGTGACCCGTGCTGGTGTTGTCACCCCGGTGGCCAGATGCTGTCCTTAATCTACACGCTCGGCTTCATTCCTCACAGATATCAGAGGATGGAACCATGCAACTGATATGcaactgtacagtgtgtgcagtCTTATGACTCTACCATTACAATACAGTatgatatatatacagtatcagtcaaaagtttggacacacctactcattcaagggttttacttcatttttactattttctacattgtagaat
>XM_036950364.1
TTGGAGGTTGCATGCAGTAGGCGGAACCTGGACACGCTCAACATCCCACATTCAATAGATTATGAGCTACATTTTTATAGTGAACACATTACATTTACACAGCAATTGAGAAGGAGCGCACACGGATCTCATAAAATATTGATTGCCGTATAACAGGTAACGGAGTGAAGAGCCAcaagacaaagaaaaaacagcaaAGAAGCAGATGCAAGATTCGTGTGGAGATATTCGGACTGAGTTCACATTGGCACACTAGTTATCTCTGACTCCTGAAGGAAAAGAggacatcagacacacacacacacacacacacacacacacacacacacacacacacacacacacatccatcagCAGAAAGATGAGTGACGATAAAGCAGCTGAAAGCGTTGAACCTGCTCCACCAGCTCTAGCACCAGCGGCAGCACCAGCTCCAGCTCCAGCACCAGCACCAGCTCCAGCACCAGCACCGGCGCCAGCAGAGATGAACTCTATTCCCAATGGGAAAGGCCATGAGCCTGGGGAGGAAACCACAGCGGAAGCCAAAATACCACCAGGAGACACCACAGAGCAGGAAATTGTTCCTAATAGTGTCCAAAATGTCAGAAGTGAGGATCCAGAGGCTAACCTTGCAGAGAGTCAGGAGTTCCTGTCTAGCATGGAGGACAAGAAGGCCACAGGCTTCACAGACTTTGAGGGGAAGACCTCTTTCGGAATGTCAGTATTCAACTTGGGCAACGCCATCATGGGAAGTGGAATTCTGGGATTGTCGTACGCCATGGCCAACACAGGGGTCGTCCTATTCCTgGTGCTCCTGACGGTAGTGGCTGTCCTCTCATCTTACTCCATCCACTTGCTACTCAAGTCCTCTGGCATTGTGGGGATCCGGGCGTATGAGCAGCTGGGCCAAAGGGCGTTTGGAACGCCAGGCAAGATGGCCGCCGgcatcgccatcacactgcaaaACATTGGAGCCATGTCCAGTTACCTGTATATCGTGAAGTATGAGTTCCCTCTGGTCATCCAGGCCTTCCTGGGGGTTGACAATCCATCAGGtGAGTGGTACCTGAATGGGAACTACCTGGTCATCATGGTGTCCATCAGTGTCATCCTGCCTCTGGCTTTGATGAAGCAGCTAGGGTACTTGGGCTACACCAGTGGCTTCTCCCTCACCTGCATGGTCTTCTTCCTCATCTCGGTCATCTATAAGAAGTTCCATACCCTCTGTCCCTTTGTAGACTTTGTCTTTAACAGCACAGCCAGTGTGACTGCTGTTACCAACGACACAGGTTACAACGAAGCCTGTGTTCCCAAAATGGTCAACCTCAACTCACAGACTGCCTACACCATCCCCATCCTGGCGTTTGCCTTTGTGTGCCACCCTGAGGTCCTGCCCATCTACACCGAGCTCAAAAACCCAACCAAGCAAAGGATGCAGCATGTGTCCAACATCTCCATTGTAGTCATGTACACCATGTACTTCCTGGCTGCTCTGTTTGGATACCTGACCTTCTATGGTGAGGTGGAGTCAGAGCTGCTGCACACCTACAGCCGTCTGGACCCTTACGACACCCTGATCCTCTGTGTCCGTCTGGCCGTGCTCACCGCTGTCACACTCACCGTCCCCATAGTGCTCTTCCCTGTAAGGAGAGCCATCCAGCAGTTGTTTTTCCccaacaagacattctactgGCCCCGCCACATTGCCATTGCTGTCACCCTGCTCACCCTCATCAACATGCTGGTCATCTTCGCCCCTAACATCCTGGGCATCTTCGGCATCATCGgtGCCACATCTGCCCCCTGCCTCATCTTCATCTTCCCTGCTGTCTTCTACATCCGCATTGTACCCGAAGAGGAGGAGCCCATGCGCTCTACCCCTAAAATCCTGGCTGCCTGCTTCGCTGGAATAGGCTTCCTGTTTATGGTAATGAGCCTCAGCTTTATCCTCATTGATTGGACGTCGGGGAGTAGCAAAGCCAGCAGCGGTCATTAGGCTGCTTCTATAAGTCTTCTGATTTTATATTGTAAATCTAGACCTGTATTGTATTTTCTCTGTGTTGTCATGGATCATATTTAGTAGAAGATGCACTATCTCTTCCTCCAGAATGAGTGGGCCATAGTGTCTAGAGATGGGGAATTCAATCTTCTGGAGGTTTCTGCTCCCCATTGGACTGCTTCTCACTCAAGGTCCATGGAATTGTAGCCCCAGCCAAACTGTGTATAGAGGGAAAGGCCAACATACTTTCCTGGGGAAGACGATTGTGCATTAGAAACAAATGGAAAGTCATGCTGGCTTGCTGAATCTGCCACCACCTCCCATTCCAGCCCAGCCCTGCGCTCCAGACCAGACCCATAATCTATTACCCTATAAACGTGTAATCTGTCAATCACAGCAAGAATCTAACTGCCACACTCTAGTCTAGATAACCACATAGCTTTCAGTAGGGGAGAAGAAGACACAACAGATCGTTGGAGGCTGGGCAGTTCTTTCCTATTTGTAGGCCAAGTCTACTGTGTTAAGTTATTGATGTAGTTAGGTCATGGCAATATTCGGTACAATAGCTGAGGGAATGTGGCATTAAAAGCTATTGGACAGAGGCAGAGCGGTGGTTACTGTGGCAACGTCCAGTGACCCGTGCTGGTGTTGTCACCCCGGTGGCCAGATGCTGTCCTTAATCTACACGCTCGGCTTCATTCCTCACAGATATCAGAGGATGGAACCATGCAACTGATATGcaactgtacagtgtgtgcagtCTTATGACTCTACCATTACAATACAGTatgatatatatacagtatcagtcaaaagtttggacacacctactcattcaagggttttacttcatttttactattttctacattgtagaat

Function

NR:

description
sodium-coupled neutral amino acid transporter 3-like isoform X1

GO: NA

KEGG:

id description
K13576 SLC38A3, SNAT3; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950365.1 False 2949 mRNA 0.49 16 61054631 61129366
XM_036950363.1 False 2983 mRNA 0.49 17 61054631 61129367
XM_036950364.1 True 2878 mRNA 0.49 17 61054631 61129367

Neighbor

gene id symbol gene type direction distance location
LOC110494276 NA coding upstream 10909 61039278 ~ 61043722 (+)
LOC110494275 LOC106565569 coding upstream 17029 61024708 ~ 61037602 (+)
LOC110494274 brk1 coding upstream 35890 61014725 ~ 61019187 (+)
LOC110494272 gpx1 coding upstream 82912 60970324 ~ 60971719 (+)
LOC110494264 oxtr coding upstream 455017 60575678 ~ 60599614 (+)
LOC110494281 gnai2 coding downstream 16144 61145511 ~ 61257368 (+)
LOC118940484 NA coding downstream 25528 61154895 ~ 61159504 (+)
LOC110494282 LOC106565567 coding downstream 141118 61270485 ~ 61276247 (+)
LOC110493231 LOC106565565 coding downstream 224118 61353485 ~ 61458471 (+)
LOC110494283 LOC106565563 coding downstream 426506 61555873 ~ 61558328 (+)
G1471796 NA non-coding upstream 16116 61038308 ~ 61038515 (+)
G1471732 NA non-coding upstream 31472 61022612 ~ 61023159 (+)
G1471795 NA non-coding upstream 48803 61005602 ~ 61005828 (+)
G1471720 NA non-coding downstream 3811 61133178 ~ 61135571 (+)
G1471853 NA non-coding downstream 7852 61137219 ~ 61137589 (+)
G1471854 NA non-coding downstream 11407 61140774 ~ 61141184 (+)
G1471855 NA non-coding downstream 14075 61143442 ~ 61143759 (+)
G1471858 NA non-coding downstream 15309 61144676 ~ 61144955 (+)
G1471723 LOC100380707 other upstream 55568 60972478 ~ 60999063 (+)
G1470607 NA other upstream 950624 60101892 ~ 60104007 (+)
G1469076 NA other upstream 2546746 58507297 ~ 58507885 (+)
G1467219 NA other upstream 3440331 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 3506453 57498305 ~ 57548178 (+)
G1473171 LOC106581772 other downstream 1569136 62698503 ~ 62698815 (+)
G1473177 NA other downstream 1580972 62710339 ~ 62711136 (+)
G1474159 NA other downstream 2087581 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 2529077 63658373 ~ 63663255 (+)

Expression


Co-expression Network