LOC118940484


Basic Information

Item Value
gene id LOC118940484
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 61154895 ~ 61159504 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037030.1
ttggcagtacgtccatctggcctcacaactgcagaccacatgtaaccacgccagcccaggacctccgtATCCTGCTTCCCCTGCAGGATTGTCTTAAAGGGGTTTGAGGGGTTGCTGAGGagtattctgtctgtaataaagccccttttgtaggaaaaaaaacattgtttggctgggcctggctccccagttggTGCACCCCtacctagtcatgtgaaatccatagattagggcctaattgatttccttatgaacattaactcagtaaaatcttttaaattgtttcatattgcgtttttatatttttgtttgttgTATGTAAAGATGTGTCAGCAGTAGCtgtactaaacacacacacacccagacagccCTGTGCTGTGTTCTGCTGAGCTAggctctgctctggtctggtcacGCTGTGGTGTGAGAGGCAGGGACAGGGCTCATTTGGCTGTGCCGTTTACCTCTAACTTCTCTGTGTGGGAGAGCAAAGTGGGCACTGCTGCATGTTAGCTAGTCTGCAGATGAGCCTGTACAGCAGTATAGGAACTGTTGACTCATTACAAAAGTGTTTTTTGCTTGGCCCATAGGCAACAATCTACCAAAGGTCTACTTTGCTCCACTGTTCTGTCATGTGGCCCCAGGACAAGAGAAGTCTTTGTCTGTTCCAGATATAGCCCTGGTTGCCTTGCCTGCCACCATACACTAGCATGACCCTTTCAATCTCTGGACCACTCTGAAATCACAACAGATTTGCCAACGGCTACAAACCCCTATTGAATCCCGAGTCCACAACCTCTTAAAGGCGTCCTCATGCTTCCCAGCCAAAAGAGTTCaggaagagtttgtgcatatattatgacattttgtCATGTCTTTTGTTCGTTTCGGGCACACAATGTTTTCTGAAGGCAAACAGAAGTAGGTAGCCGAAGTTTACGCAACTTCcgttggtgattggtcaacagagGGGTCCTTCAATAATGTCTTTGTTGTCATTGAATGAGAGATGACAGTTTCATcaattttacatttttgtttttattgCCAAACTccgttagatgtaaaattgtgcgACAAAGATCTCCTCTGCAAAAGCATCAAAACGAATGACAGATTTCTTTGATTAACTGGGACTATTTTGTGGAAGTGTATATTGGCTACAGCCTCTTGAAATGCACAAACAGTCCTGTTGCTGCTGCTTTTTCTAGTTCTCCAAATTAAGGTCTTaagggactatgcatataatctctcctctctcacagcaCCCCTCCGCTCCATCATGAcaactccctccatcccctctcctcaaAAAATACACTATGattaatgataacttggctatatacacagggtaccagtgcaggggtatgaggtaatgtaGGTAGATATGATATGGTAGATATTTGgtaaactatttaactaactatttagcagtcttctgacttgggtagaagctgttcagtgtcctgttggttccagacttgctacgttggtactgcttgccgtgtggtagcagagagaacagtctatgaccttggttggctggagtctttgaacattTCTAGGGCCTTCTGTCTGACACcaactggtatagaggtcttggatggaaGGGAGCgcgaccccagtgatgtactgggccatacgcaaaaccctctgtagcgccttgcgatcAGATgctaagcagttgccataccaagctgtTATGCAGCCAAGATGCTctgtggtgcagctgtagaacttttgcgGATCTGCATGACCATGCCACATTTTTTTTCAACCTCCTGAAGGGGACATGGCATTGTCTTCtgtcttcacgactgtgttggtgtgtttggaccatgatagattctTAGTGATGTGGACCCCGAGAAACGTAATGctcccgctccactacagccccgtcaatgtgatGGTGTGCTCGGCTCTCCGTTTCCTGCTGTCCATGATcacctcctttgttttgctgacgttgagggagaggttttgtGTGTTAGCACCACAATGCCAGGTCtcctacctcctccctataggctgtcataTCGTCATTGTTttggcctaccaccgtcgtgctgtcggcaaacttaatgatggagtCGTGCGCAGACAAGTAGTCATGGGTGTACTCCCAGTTCACCCATGACTACAAGGGGACTaagcactcacccctgaggggccctccTTGTTGAGGGTCAACGTGgtgaatgtgttgttgcctacccttaccaccggGGGAATTGCTTCTGtaattccaggatccagttgcagagggatgtgttcagtcccagggaccttagcttagtgatgagcttggagggcactatggtgttgaacactgagctgtagtcaatgaacagcattctcacgtaggtgttccttttgtccaagtagGAAAGGGCactgttgagtgcaatagagcatgtgtcatctgtggatctgttgtagCTGTTTTCATGGCTACAAATGTGAGTGCTACTGAGCAGTAGTCATTTAAACAGGTTACAtatgtgttcttgggcacagggactatggtggtctgcttgatgcatgtaggtattacaaactgggtcagggagagattgACAATGTCAGTGAACACACTTGGAGGGGATAGGATAAAAGGAGAGTGAAGATGGCTGGAGAGGATGGCAGggcagtgagggagaggaggctggATGATGAGAATAGAGAAGGGCTATGACAGGAGGATAGTATCTCTGTGGTGAGGTGTCAGTGCTCCTGTGTATAGCGCCCGGGGTTGAGCTGTTTAATCAGCAGGGTGGCTTTGCCAAACCACAGCCCTCACTGCTGCCATTGTTCACGGCTCAGCCCTAATCTGATCTTCTCAAGTGTCGTATCCCCCCCCCTCCTCAATACAATAattgagacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagagggaggggaagttAGAGTTTAAGTAGCCGCCAGAGCAGAAGAGTGACGCTCACTCTTAGATGATCTCAAATTATTTGAAGCATCTCTTGCTGTGTGTATTTCTGTTCTTTCCGCTCGGTCTTGGTGGGTACCAGCGTGATATGAGGTTTCTTATAGGTTCATATCTCTAACAAAGGAAAGGAAGAGCGTCGGGTGGCACTGGTAATGTGCTGATAATCACTGTCCTCGTCCTGTTACTTTTCACTCCTCAACCCTCCCAGAGGGAGCATTTTAATGTATCTGGTGGAATAACTTAAGCCCCACACCTAACCTGAACCTTGATACAACTGAGCCATCTACAGTACACTACTGCTCTGAGAAGTCTTTTGATCAGCTATAACCCATGGCCAGGGCCTAGTATGACTGTTTTATAAGGACTTTTCCTGGTCAGGTAAGTGTTATGGGGACAACTTTCTCAGTTCCTGCATTTGAAAAAACTATACAAAGATCAGCTTTATTGCAGATTGtagcttctatcaatgtaattgtctgcgtcatttccaatcccccatattgtttttggtaaatatatattttcctttatattcccctaattggagtaaactaatggacaacagaagttaggcttctacttccaggttatacattttatggacacagtatattttacttattttttaaaactaatttgtcccacccttcagctcccctcaacccctcccatctatctctgaacgcCATCCAGTTTCTATTATCCATAATAAAGAGATCACTTTTTTGACTTTACACCCCTGTGGACTCTAGTTTTATCTTaccttgattattgtccagtcatatggtcaagtgctgcaaagaaagacctaatTAAGCTGCAGCTGTTCCAGGACAAAGTGGCTcgtcattgtaatcagagggctgatattaaTACTATTCATACCAGTATCTCTTGGCTAAAAGTTGAAGAAAGACAGTCACTTGTTTTTATAAAAAATGTGTTgtggaaattccaaattgtttgcatagcacacacttaccccaccagacatgccatcaggggtcttttcacagtccctggatccagaacaaattcaaggaaacgtacagtacagtattatacagagccatgagtgcatgaaATTACCTACCATCTTATAttgcactagtgaacagcaaacctggtttccaAAAACAAATTAAGCACCACAAGGCACAACGCTtctccccatgtgacctacttgttgtgtgtaaaGTATGTACTGACATGCATGTGGTAGaagcgcgcgcgcgcgcgcgcacacacacacacacacacacaacatatgttaatgtttttaaatgtatttcaattgtaaaaaaaaaacatatatttcttTGTCTGGACCCCAGTAAGCCTAGCTGTCACCATTGGCGTCggttaatggggatc

Function

NR:

description
PREDICTED: RNA-directed DNA polymerase from mobile element jockey-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037030.1 True 4357 mRNA 0.45 2 61154895 61159504

Neighbor

gene id symbol gene type direction distance location
LOC110494279 LOC106565568 coding upstream 25528 61054631 ~ 61129367 (+)
LOC110494276 NA coding upstream 111173 61039278 ~ 61043722 (+)
LOC110494275 LOC106565569 coding upstream 117293 61024708 ~ 61037602 (+)
LOC110494274 brk1 coding upstream 136154 61014725 ~ 61019187 (+)
LOC110494272 gpx1 coding upstream 183176 60970324 ~ 60971719 (+)
LOC110494282 LOC106565567 coding downstream 110981 61270485 ~ 61276247 (+)
LOC110493231 LOC106565565 coding downstream 193981 61353485 ~ 61458471 (+)
LOC110494283 LOC106565563 coding downstream 396369 61555873 ~ 61558328 (+)
LOC110495182 LOC106565603 coding downstream 420135 61579639 ~ 61581869 (+)
trnaf-gaa-81 NA coding downstream 428887 61588391 ~ 61588463 (+)
G1471858 NA non-coding upstream 9940 61144676 ~ 61144955 (+)
G1471855 NA non-coding upstream 11136 61143442 ~ 61143759 (+)
G1471854 NA non-coding upstream 13711 61140774 ~ 61141184 (+)
G1471853 NA non-coding upstream 17306 61137219 ~ 61137589 (+)
G1471720 NA non-coding upstream 19324 61133178 ~ 61135571 (+)
G1471863 NA non-coding downstream 7520 61167024 ~ 61168190 (+)
G1471868 NA non-coding downstream 19145 61178649 ~ 61178965 (+)
G1471911 NA non-coding downstream 89127 61248631 ~ 61249839 (+)
G1471915 cdhr4 non-coding downstream 100589 61260093 ~ 61260559 (+)
G1471916 NA non-coding downstream 101147 61260651 ~ 61260857 (+)
G1471723 LOC100380707 other upstream 155832 60972478 ~ 60999063 (+)
G1470607 NA other upstream 1050888 60101892 ~ 60104007 (+)
G1469076 NA other upstream 2647010 58507297 ~ 58507885 (+)
G1467219 NA other upstream 3540595 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 3606717 57498305 ~ 57548178 (+)
G1473171 LOC106581772 other downstream 1538999 62698503 ~ 62698815 (+)
G1473177 NA other downstream 1550835 62710339 ~ 62711136 (+)
G1474159 NA other downstream 2057444 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 2498940 63658373 ~ 63663255 (+)

Expression

LOC118940484 Expression in all Baseline Samples

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LOC118940484 Expression in each Bioproject

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LOC118940484 Expression in each Sample
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Co-expression Network