LOC110494283 (LOC106565563)


Basic Information

Item Value
gene id LOC110494283
gene name LOC106565563
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 61555873 ~ 61558328 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569227.2
AGGTGCAGACCTGTCAATCACCCTCATCACTGTCCAGTCAAAGccaggagaaaaggagagggcaGGGCATGGACTGGCTTGGCCGTTGCTATGCATGAGCGAGTGCCATGGTGTCCATGGAGACCAAGGGCTATACTGACCTCCTGGAGACCAGCGATGGGCAGGGGTCGGGACTTTTGGAGAGAGGGGATGTGTCTGGGACTGAGGAGGGCTGGAGCGTCCCCTTACCCCTGGGCTTCCAGGTGTCCCTCACCACCGTGCTGATGTTGGAGCTGGTGCTCGGCTTCAGCAGCAACCTGACCGTGCTGGTGCTCTACTGCGCCCAGTCCAACCTGGTTGACTCAGTCAGCAACATGGTTACGGTCAGCTTGCACGTGCTGGACATCCTGGTGTGTGTGCTGTGTCTGCCGCTGACCGTGGCGATCATCCTGCTCCCAGTGGACGGTAGTGGAGGGGGCATCCTGGCTACGCTGTGCTGCTTCCATGAGGCCTGCGTCACCTTCACCAGTGTGGCCACGGCCATCAATGTGCTGGTCATCAGCCTGGACCGCTACGACATCACCGTCCGTCCAGCAACGCGGCTGCTGACCCCGCGACGTGCTGCACTCCTCCTGGCTGCCGTTTGGGCCATATCACTGGCAGTCTTCTTCCTGCCCTTCCTGGAGGGGGACTTCTTCTCAATGGGGTCTGACACGGAGGACAATGAGATTGGAGGAGGGttggagatggagatgggggaTCTGATCCCTGAGTCTGATTCTGAAGCCCCTACTGGACTGACCCCCACTGGGCAAAACCACACTGGGCTGACCCtcactccctccacctcctctactCCATACTACTCCCTCCCCCTGCCGCCATTGAGGCAAAACCGGACACTGCTATGTGTGGGTGGGCAGGGCTACCACACGGGCCTGGCCATGTACTACCACCTCCTCCTGCAGGTGCCCTGCTTCTTCATCGCTGTGGTCGTCATGTTGTTCACATACTCCCGCATCCTGCAGGCCCTCAACATCCGCATCGGCACCCACATAAAGAGGGGCCCACGGGCCTCCAATAAGGACTCAGGCTGCAGGATCCGCAGGCGGAAACAAAGGAGGAAGGGACTGAATCTGGCCACAGAGGGGAGAGGTTCCTCCAGCCAGAACCAACGCCTCACCCACCCGCCCCTCATCCCATCccccagctccctccctcccctctcctccatgccGCTGGTTACCTCTGACAGTGGGGCCACGGGGGTCACcaacaccaccgccaccaccccCAGCGCAACCACCCCAGCGACCCCTAACCCCACTGACGACATCTCCCCCCCACCGGCGGCTGCAGACCGCCCAGGCGTCCAGGCTTCTGTGTCGGCCATCATTGCCCTGAGGAGGGCAGTGAGGCGCCACCGGGACCGGCGGGAGCGCCAGCGGAGAGTCTTCAAGATGTCCTTGATCATCATCTCCTCTTTCCTGGGCTGCTGGGCTCCTCTGTCCATGGTGAACGTGTTGATACTGTGCCTGGGCCCCAGCGATGGCCTGGTACGTGTAAGGCTCTGCTTCCTGGCCATGGCATACGGCACCACCATCTTCCACCCGCTGCTCTATGCCTTCACCAGGCAAAAGCTGCGTAAAGCGCTGAAGACCCATGTCAAGAAGAGGGTGGTGTCCCTGCTGCAGGTGGACCCGGCGCCCAATGGGGGAGctgttattcacaattcctggGTGCAGGGgggtggacagaggaagggacgCAAGCCCCGACTGGAGGGCAGTGACGCCACCAGTAACTGCCTAACAGTGgctgtgagagaatgagaggccgtgcagctgtgtgtgtgcgtgcgtatacAAGCGAGCTTGCATGTGTATATGGGTGTACAGTGTGTGATAGTTGACAAAGGTCACACTACATCATCAGCACCTCCCTCCATCCAGATGTGTGATGATGGCAGGTGGGCCCAGAGCTCTAATTAACATCAGACCTGCTCTGTGATCTATGTACACAGCTCTTCATTAGTCCCCCAGTTAACGACAAGATGGCCACTTCTTCTCCATGGCAATGCCAAGCTACAAAGCAATATGTGACATCACCTGCGTTGCCGCAACCTTAGTTACTGAAGATATACATCCCAGTATAGGTACAGAGCAAAAATATCCACACACATTGATCAACCTGTTGTCATTCACGGAACAAGTGAACACACAATATCTACCTGCACACAGATCTCAATGAGAGTCAATATCCAGTAACAGTTTATCATTTGATTAGTCATGCATTAAAGGTgaagttttattttttacaaccTTTTTTACAACCTATTTTTGATGTActgtaaatggcatgttatagaagggtccTGACACTTTTTTTGTGAtttcatgtttgtttgtttttatttcttcCTCATCCTCATTGTGTAGTATGAGGTCCCCGAAAAAATATGAACAAAGGCTAGCAGA
>TU1684022
AGTGGAGGGGGCATCCTGGCTACGCTGTGCTGCTTCCATGAGGCCTGCGTCACCTTCACCAGTGTGGCCACGGCCATCAATGTGCTGGTCATCAGCCTGGACCGCTACGACATCACCGTCCGTCCAGCAACGCGGCTGCTGACCCCGCGACGTGCTGCACTCCTCCTGGCTGCCGTTTGGGCCATATCACTGGCAGTCTTCTTCCTGCCCTTCCTGGAGGGGGACTTCTTCTCAATGGGGTCTGACACGGAGGACAATGAGATTGGAGGAGGGttggagatggagatgggggaTCTGATCCCTGAGTCTGATTCTGAAGCCCCTACTGGACTGACCCCCACTGGGCAAAACCACACTGGGCTGACCCtcactccctccacctcctctactCCATACTACTCCCTCCCCCTGCCGCCATTGAGGCAAAACCGGACACTGCTATGTGTGGGTGGGCAGGGCTACCACACGGGCCTGGCCATGTACTACCACCTCCTCCTGCAGGTGCCCTGCTTCTTCATCGCTGTGGTCGTCATGTTGTTCACATACTCCCGCATCCTGCAGGCCCTCAACATCCGCATCGGCACCCACATAAAGAGGGGCCCACGGGCCTCCAATAAGGACTCAGGCTGCAGGATCCGCAGGCGGAAACAAAGGAGGAAGGGACTGAATCTGGCCACAGAGGGGAGAGGTTCCTCCAGCCAGAACCAACGCCTCACCCAC

Function

NR:

description
probable G-protein coupled receptor 22

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569227.2 False 2456 mRNA 0.56 1 61555873 61558328
TU1684022 True 720 TUCP 0.60 1 61556319 61557038

Neighbor

gene id symbol gene type direction distance location
LOC110493231 LOC106565565 coding upstream 97402 61353485 ~ 61458471 (+)
LOC110494282 LOC106565567 coding upstream 279626 61270485 ~ 61276247 (+)
LOC110494281 gnai2 coding upstream 298505 61145511 ~ 61257368 (+)
LOC118940484 NA coding upstream 396369 61154895 ~ 61159504 (+)
LOC110494279 LOC106565568 coding upstream 426506 61054631 ~ 61129367 (+)
LOC110495182 LOC106565603 coding downstream 21311 61579639 ~ 61581869 (+)
trnaf-gaa-81 NA coding downstream 30063 61588391 ~ 61588463 (+)
LOC110494284 LOC106565564 coding downstream 118637 61676965 ~ 61684917 (+)
LOC110494287 NA coding downstream 150358 61708686 ~ 61714434 (+)
LOC100135961 LOC100135961 coding downstream 165474 61723802 ~ 61727917 (+)
G1472493 NA non-coding upstream 5905 61549740 ~ 61549968 (+)
G1472492 NA non-coding upstream 6394 61549192 ~ 61549479 (+)
G1472482 NA non-coding upstream 18369 61537211 ~ 61537504 (+)
G1472477 NA non-coding upstream 23655 61532008 ~ 61532218 (+)
G1472474 NA non-coding upstream 29302 61526260 ~ 61526571 (+)
G1472499 NA non-coding downstream 11096 61569424 ~ 61569635 (+)
G1472500 NA non-coding downstream 12169 61570497 ~ 61571756 (+)
G1472502 NA non-coding downstream 14982 61573310 ~ 61573539 (+)
G1472504 NA non-coding downstream 17871 61576199 ~ 61576649 (+)
G1472510 NA non-coding downstream 25870 61584198 ~ 61584969 (+)
G1471723 LOC100380707 other upstream 556810 60972478 ~ 60999063 (+)
G1470607 NA other upstream 1451866 60101892 ~ 60104007 (+)
G1469076 NA other upstream 3047988 58507297 ~ 58507885 (+)
G1467219 NA other upstream 3941573 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 4007695 57498305 ~ 57548178 (+)
G1473171 LOC106581772 other downstream 1140175 62698503 ~ 62698815 (+)
G1473177 NA other downstream 1152011 62710339 ~ 62711136 (+)
G1474159 NA other downstream 1658620 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 2100116 63658373 ~ 63663255 (+)
tmcc2 LOC106565656 other downstream 2125762 63684043 ~ 63691033 (+)

Expression


Co-expression Network