LOC110495182 (LOC106565603)


Basic Information

Item Value
gene id LOC110495182
gene name LOC106565603
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 61579639 ~ 61581869 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948426.1
ATGGTGCTGGATAATAGTGAGGTGACAACGTTTGACCTGCCCCTCTCAGCCAGCCATGGAGCCACTGACGCTTCTGCCTCTAACATCAGCGTGGATGGAGCAGGGGCTGTGGCCGGGGTGGAATCTCTGGCTGGGGGGGCTGAAGTGTCAGTGGGCGCCGAGGCTCAGCGGACACGGGCTGCTCTGGAGCAGCTACAGCAGAAGATCCTGAAGAGCATTGAGCAGATTCGGATAGAACAGGAGGCACGAAACGACAATGTGGCAGAGTACTTGAAGCTGGCCCACAATGCCAACAGCCATCAGGCTTTTCGTATCAAACAGGTGTTTGAGAAGAAGAACCAGAAGTCTGCACAGACCATCAACCACCTGCACAAGAAGCTAGATCACTACCACAAGAAGTTTAAGGAGatacagcagCAaggtctgggccggcagcctaaGGATGTGCTGGGGGATATGCAGCAGGGGCTGAAGGATGTAGGGGCTAACGTACGGGCAGGGATCAGTAGCTTTGGTGGAGGTGTGGTGGAGGGTGTCAAAGGGGGCGTGTCAGAACTCACCCATACAGCTGTGGTGTCTAAGCCCCTGGAGTTTGTCAGCTTGATCCGCAACAAATTAGGCAGCACACACTCGCTGGAGGATGGTGTGGAGGAGCATTCAGATGATGTACCCCTGAGTAGCAGCGTCACCTTGGCCTCCAGCTCAAAGTACAGTAGTGACGACGAGTGCTCCAGTGACTCTGTGACAGGTAGTAATTATTTTGgggctgggggaggaggggggatgttGGGGTTGGGACTGGCCAGGCTGGACGGGAACGACCACCACAGGTCCTGGGACACTTGGCTGGAAGGCCTGCAGGAGATCAAAGCCAGCCAGGCCCACATGGAGGACGCCATCGAGGACATGAAGAGTCAGCTGCAGAGCGACTACGCCTACATGACCCAGTGCCTGCAGGAAGAGAAATACAGGTATGAGCTACTGGAGGAGCAGCTGAATGACCTGACAGAGCTGCACCAGAACCAGATGTCCAACCTGATACAGGAGCTGGTCAGCATGGAAGAGAAAGTAACCTACCAGTCCTATGAGAGAACCAGAGACTCTCAGGTAAAGAGGCAAAAACCTGGATGTATAAGATGTACTGAAACACACAAGTTTGAGTGCAGAAAGGAGCCTATAGTACCCGTAAAGCAGTTGTAACTTTATGTTTACCTGTGTTTGTATTTGCATATACATATTATTTTATATGTGTGTCTGTA

Function

NR:

description
transmembrane and coiled-coil domains protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948426.1 True 1259 mRNA 0.53 3 61579639 61581869

Neighbor

gene id symbol gene type direction distance location
LOC110494283 LOC106565563 coding upstream 21311 61555873 ~ 61558328 (+)
LOC110493231 LOC106565565 coding upstream 121168 61353485 ~ 61458471 (+)
LOC110494282 LOC106565567 coding upstream 303392 61270485 ~ 61276247 (+)
LOC110494281 gnai2 coding upstream 322271 61145511 ~ 61257368 (+)
LOC118940484 NA coding upstream 420135 61154895 ~ 61159504 (+)
trnaf-gaa-81 NA coding downstream 6522 61588391 ~ 61588463 (+)
LOC110494284 LOC106565564 coding downstream 95096 61676965 ~ 61684917 (+)
LOC110494287 NA coding downstream 126817 61708686 ~ 61714434 (+)
LOC100135961 LOC100135961 coding downstream 141933 61723802 ~ 61727917 (+)
LOC110494288 LOC106565560 coding downstream 148268 61730137 ~ 61734872 (+)
G1472504 NA non-coding upstream 2990 61576199 ~ 61576649 (+)
G1472502 NA non-coding upstream 6100 61573310 ~ 61573539 (+)
G1472500 NA non-coding upstream 7883 61570497 ~ 61571756 (+)
G1472499 NA non-coding upstream 10004 61569424 ~ 61569635 (+)
G1472493 NA non-coding upstream 29671 61549740 ~ 61549968 (+)
G1472510 NA non-coding downstream 2329 61584198 ~ 61584969 (+)
G1472512 NA non-coding downstream 5998 61587867 ~ 61588136 (+)
G1472515 NA non-coding downstream 12206 61594075 ~ 61594284 (+)
G1472519 NA non-coding downstream 16449 61598318 ~ 61598545 (+)
G1472595 NA non-coding downstream 111060 61692929 ~ 61755557 (+)
G1471723 LOC100380707 other upstream 580576 60972478 ~ 60999063 (+)
G1470607 NA other upstream 1475632 60101892 ~ 60104007 (+)
G1469076 NA other upstream 3071754 58507297 ~ 58507885 (+)
G1467219 NA other upstream 3965339 57589865 ~ 57614300 (+)
G1473171 LOC106581772 other downstream 1116634 62698503 ~ 62698815 (+)
G1473177 NA other downstream 1128470 62710339 ~ 62711136 (+)
G1474159 NA other downstream 1635079 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 2076575 63658373 ~ 63663255 (+)
tmcc2 LOC106565656 other downstream 2102221 63684043 ~ 63691033 (+)

Expression


Co-expression Network